Wall clock time and date at job start Wed Apr 1 2020 03:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47246 * 2 1 4 4 N 1.32161 * 120.53564 * 264.29442 * 3 2 1 5 5 C 1.31862 * 120.96501 * 179.97438 * 4 3 2 6 6 N 1.31880 * 122.09659 * 0.02562 * 5 4 3 7 7 C 1.32140 * 120.96384 * 359.66185 * 6 5 4 8 8 C 1.39923 * 120.53786 * 84.27269 * 3 2 1 9 9 C 1.47837 * 120.93762 * 0.02562 * 8 3 2 10 10 O 1.21548 * 119.99927 * 42.42098 * 9 8 3 11 11 N 1.34776 * 119.99798 * 222.41699 * 9 8 3 12 12 C 1.48658 * 125.78726 * 355.08488 * 11 9 8 13 13 C 1.53065 * 103.44458 * 155.60017 * 12 11 9 14 14 H 1.08996 * 110.55032 * 283.27001 * 13 12 11 15 15 C 1.51619 * 116.67592 * 155.89088 * 13 12 11 16 16 C 1.53820 * 107.08589 * 182.55117 * 15 13 12 17 17 C 1.52706 * 111.60152 * 57.49363 * 16 15 13 18 18 C 1.53843 * 111.70982 * 306.01193 * 17 16 15 19 19 H 1.08997 * 110.00937 * 176.61904 * 18 17 16 20 20 N 1.46501 * 109.93846 * 297.81314 * 18 17 16 21 21 C 1.36933 * 119.99654 * 207.20930 * 20 18 17 22 22 H 1.08000 * 120.00677 * 0.02562 * 21 20 18 23 23 C 1.38817 * 120.00060 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00112 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99819 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47450 * 89.99780 * 25 23 21 27 27 H 1.48500 * 109.47397 * 210.00085 * 25 23 21 28 28 H 1.48501 * 109.47004 * 329.99950 * 25 23 21 29 29 C 1.51436 * 107.04044 * 57.19838 * 18 17 16 30 30 H 1.09005 * 110.22605 * 54.38036 * 29 18 17 31 31 C 1.48243 * 125.78289 * 175.05932 * 11 9 8 32 32 H 1.09007 * 109.46721 * 300.00139 * 1 2 3 33 33 H 1.09001 * 109.47180 * 59.99288 * 1 2 3 34 34 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 35 35 H 1.09008 * 109.46777 * 240.00412 * 2 1 3 36 36 H 1.08993 * 109.47402 * 120.00465 * 2 1 3 37 37 H 1.07999 * 118.94775 * 179.97438 * 5 4 3 38 38 H 1.08003 * 120.53688 * 180.31183 * 7 6 5 39 39 H 1.09000 * 110.62522 * 37.11268 * 12 11 9 40 40 H 1.09002 * 110.62456 * 274.08861 * 12 11 9 41 41 H 1.08997 * 109.94628 * 301.97039 * 15 13 12 42 42 H 1.09003 * 109.94383 * 63.13402 * 15 13 12 43 43 H 1.09005 * 109.03099 * 178.14848 * 16 15 13 44 44 H 1.08999 * 109.03750 * 297.00127 * 16 15 13 45 45 H 1.09004 * 109.01608 * 185.43698 * 17 16 15 46 46 H 1.08996 * 108.95834 * 66.55161 * 17 16 15 47 47 H 0.96998 * 119.99947 * 27.22097 * 20 18 17 48 48 H 0.97001 * 120.00088 * 180.02562 * 24 23 21 49 49 H 1.09007 * 110.17029 * 295.94363 * 31 11 9 50 50 H 1.09004 * 110.17000 * 57.66583 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3629 2.0162 -1.1327 5 6 2.8029 3.2592 -1.1426 6 7 2.9350 3.9646 -0.0361 7 6 2.6218 3.4498 1.1398 8 6 2.1560 2.1312 1.1991 9 6 1.7989 1.5086 2.4916 10 8 2.1259 0.3613 2.7244 11 7 1.1110 2.2133 3.4118 12 6 0.7371 3.6482 3.3066 13 6 -0.4873 3.7646 4.2178 14 1 -1.3699 3.3548 3.7268 15 6 -0.7851 5.1386 4.7855 16 6 -2.0065 4.9910 5.7089 17 6 -1.7558 3.9665 6.8132 18 6 -1.3047 2.6116 6.2408 19 1 -1.0764 1.9211 7.0526 20 7 -2.3589 2.0523 5.3911 21 6 -2.4599 0.6964 5.2286 22 1 -1.7627 0.0393 5.7271 23 6 -3.4585 0.1663 4.4231 24 7 -3.5559 -1.1369 4.2673 25 14 -4.6640 1.3028 3.5602 26 1 -4.1277 1.6723 2.2257 27 1 -5.9669 0.6094 3.3955 28 1 -4.8560 2.5303 4.3737 29 6 -0.0603 2.8700 5.4173 30 1 0.6884 3.3869 6.0177 31 6 0.5985 1.6886 4.7000 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5139 0.8899 37 1 3.0641 3.7137 -2.0868 38 1 2.7279 4.0353 2.0411 39 1 0.4768 3.9029 2.2793 40 1 1.5461 4.2833 3.6676 41 1 0.0709 5.4987 5.3560 42 1 -1.0120 5.8337 3.9772 43 1 -2.2288 5.9574 6.1615 44 1 -2.8638 4.6719 5.1162 45 1 -2.6753 3.8242 7.3811 46 1 -0.9816 4.3465 7.4797 47 1 -2.9852 2.6424 4.9435 48 1 -4.2535 -1.5073 3.7041 49 1 -0.1508 0.9175 4.5204 50 1 1.4182 1.2844 5.2940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992918074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:03 Heat of formation + Delta-G solvation = 28.578659 kcal Electronic energy + Delta-G solvation = -32154.178247 eV Core-core repulsion = 28181.600871 eV Total energy + Delta-G solvation = -3972.577376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.48118 -40.20247 -38.54330 -35.82356 -34.96866 -33.81323 -33.14148 -31.57576 -31.33057 -30.18276 -29.44506 -27.17004 -25.85985 -25.06146 -24.24864 -22.88134 -22.02711 -21.18097 -20.99755 -19.72941 -18.91583 -18.04622 -17.68952 -17.02304 -16.98149 -16.17932 -15.18084 -15.02446 -14.89853 -14.62429 -14.40533 -14.34503 -14.09199 -13.85255 -13.67658 -13.42543 -13.04555 -12.76021 -12.66548 -12.53379 -12.50262 -12.14254 -11.95825 -11.69736 -11.63497 -11.49822 -11.35626 -11.04399 -11.00885 -10.87919 -10.75994 -10.58141 -10.44762 -10.21565 -10.13203 -9.69639 -9.63027 -9.57984 -9.50486 -9.44336 -8.99172 -8.40692 -7.35160 -5.82223 -3.17912 0.40345 0.83895 2.72516 3.01709 3.29405 3.31355 3.39453 3.58072 3.83724 3.89391 4.19430 4.31122 4.52044 4.56965 4.74782 4.83829 4.90148 5.08395 5.16087 5.24031 5.27092 5.37817 5.38051 5.39604 5.46326 5.48038 5.55573 5.60462 5.71064 5.73719 5.78985 5.82696 5.90140 6.05599 6.05808 6.07711 6.14371 6.20703 6.22749 6.34694 6.38344 6.40857 6.42755 6.57536 6.64701 6.69521 6.73193 6.90211 7.62072 7.82583 7.93121 8.21874 8.36234 9.14244 9.86703 10.05971 11.35526 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.004651 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.181882 B = 6018.228817 C = 7345.146010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C 0.235 3.765 4 N -0.521 5.521 5 C 0.307 3.693 6 N -0.528 5.528 7 C 0.177 3.823 8 C -0.227 4.227 9 C 0.582 3.418 10 O -0.524 6.524 11 N -0.604 5.604 12 C 0.104 3.896 13 C -0.107 4.107 14 H 0.097 0.903 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.125 4.125 18 C 0.195 3.805 19 H 0.064 0.936 20 N -0.741 5.741 21 C -0.245 4.245 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.927 5.927 25 Si 0.875 3.125 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.277 1.277 29 C -0.114 4.114 30 H 0.066 0.934 31 C 0.113 3.887 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.199 0.801 38 H 0.172 0.828 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.107 0.893 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 13.520 -3.897 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C 0.088 3.912 4 N -0.235 5.235 5 C 0.020 3.980 6 N -0.241 5.241 7 C 0.010 3.990 8 C -0.235 4.235 9 C 0.368 3.632 10 O -0.401 6.401 11 N -0.337 5.337 12 C -0.018 4.018 13 C -0.126 4.126 14 H 0.115 0.885 15 C -0.138 4.138 16 C -0.154 4.154 17 C -0.163 4.163 18 C 0.085 3.915 19 H 0.082 0.918 20 N -0.384 5.384 21 C -0.374 4.374 22 H 0.110 0.890 23 C -0.185 4.185 24 N -0.574 5.574 25 Si 0.705 3.295 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.136 4.136 30 H 0.085 0.915 31 C -0.007 4.007 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.216 0.784 38 H 0.189 0.811 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.125 0.875 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.927 13.002 -4.675 17.616 hybrid contribution -1.142 0.602 -0.091 1.294 sum 9.785 13.604 -4.766 17.422 Atomic orbital electron populations 1.21652 0.92778 1.03368 1.02077 1.20950 0.97423 0.89175 1.05849 1.21958 0.86269 0.96534 0.86401 1.68392 1.13562 1.11982 1.29549 1.25159 0.89148 0.86610 0.97101 1.68441 1.18109 1.38493 0.99096 1.23562 0.88204 0.90580 0.96605 1.21646 1.07761 0.97514 0.96545 1.17299 0.78438 0.85295 0.82178 1.90757 1.54037 1.16947 1.78375 1.48990 1.53698 1.11187 1.19800 1.22246 0.97336 0.81975 1.00273 1.22069 0.97953 0.96535 0.96045 0.88487 1.21312 0.98460 0.95571 0.98502 1.21512 0.97898 0.98626 0.97341 1.21871 1.01492 0.95374 0.97559 1.19830 0.86932 0.92622 0.92133 0.91794 1.42806 1.34120 1.04686 1.56758 1.19033 1.12453 0.81405 1.24541 0.88953 1.24629 0.98655 0.95196 1.00042 1.69685 1.35518 1.09553 1.42659 0.86711 0.82031 0.80660 0.80066 1.21250 1.21747 1.20348 1.22718 0.98745 0.95405 0.96723 0.91526 1.22022 0.98353 0.98291 0.82062 0.92171 0.92802 0.90846 0.89472 0.86678 0.78406 0.81082 0.91254 0.91242 0.91790 0.92172 0.92425 0.92197 0.91634 0.92173 0.80516 0.93041 0.87531 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.89 37.16 0.37 -1.79 16 2 C -0.10 -1.41 5.77 -27.88 -0.16 -1.57 16 3 C 0.24 3.47 6.11 -81.82 -0.50 2.97 16 4 N -0.52 -7.05 10.36 -10.48 -0.11 -7.16 16 5 C 0.31 3.50 12.27 -92.02 -1.13 2.37 16 6 N -0.53 -6.36 10.42 -14.24 -0.15 -6.51 16 7 C 0.18 2.16 9.30 -16.77 -0.16 2.00 16 8 C -0.23 -3.32 5.40 -104.69 -0.57 -3.88 16 9 C 0.58 9.80 7.02 -12.33 -0.09 9.71 16 10 O -0.52 -10.43 14.96 5.32 0.08 -10.35 16 11 N -0.60 -9.45 3.38 -171.50 -0.58 -10.03 16 12 C 0.10 1.29 4.93 -2.82 -0.01 1.28 16 13 C -0.11 -1.45 2.35 -89.89 -0.21 -1.66 16 14 H 0.10 1.65 6.74 -51.93 -0.35 1.30 16 15 C -0.10 -1.10 5.70 -27.00 -0.15 -1.25 16 16 C -0.12 -1.40 5.60 -26.46 -0.15 -1.55 16 17 C -0.12 -1.64 5.51 -26.44 -0.15 -1.78 16 18 C 0.20 3.19 3.03 -68.28 -0.21 2.99 16 19 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 20 N -0.74 -15.35 3.73 -53.77 -0.20 -15.55 16 21 C -0.24 -6.27 8.65 -15.06 -0.13 -6.40 16 22 H 0.09 2.58 7.83 -52.49 -0.41 2.16 16 23 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 24 N -0.93 -27.99 13.97 55.49 0.78 -27.22 16 25 Si 0.87 21.14 27.74 -169.99 -4.71 16.43 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 29 C -0.11 -1.65 2.16 -89.96 -0.19 -1.85 16 30 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 31 C 0.11 1.93 6.64 -3.03 -0.02 1.91 16 32 H 0.06 1.07 8.00 -51.92 -0.42 0.66 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.12 1.89 5.66 -51.93 -0.29 1.59 16 37 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.17 1.68 6.19 -52.48 -0.33 1.35 16 39 H 0.07 0.84 6.87 -51.93 -0.36 0.48 16 40 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 41 H 0.06 0.61 7.98 -51.93 -0.41 0.19 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.83 7.04 -51.93 -0.37 0.47 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.36 7.53 3.96 -40.82 -0.16 7.36 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.11 2.30 5.87 -51.92 -0.31 1.99 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -31.30 382.25 -10.28 -41.57 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.59 Total: 11.34 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -3.55 Total: 1.72 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.26 Total: -66.47 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.30 -10.28 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992918074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.153 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds