Wall clock time and date at job start Wed Apr 1 2020 03:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47072 * 2 1 4 4 N 1.32160 * 120.53935 * 275.72829 * 3 2 1 5 5 C 1.31850 * 120.96826 * 180.32778 * 4 3 2 6 6 N 1.31884 * 122.09308 * 359.66598 * 5 4 3 7 7 C 1.32132 * 120.97028 * 0.02562 * 6 5 4 8 8 C 1.39929 * 120.53414 * 95.44410 * 3 2 1 9 9 C 1.47828 * 120.94134 * 359.97438 * 8 3 2 10 10 O 1.21553 * 120.00074 * 315.18080 * 9 8 3 11 11 N 1.34781 * 120.00305 * 135.18707 * 9 8 3 12 12 C 1.47380 * 125.74198 * 354.79956 * 11 9 8 13 13 C 1.55435 * 106.73891 * 181.02783 * 12 11 9 14 14 H 1.09005 * 112.50205 * 213.26893 * 13 12 11 15 15 C 1.52991 * 106.45205 * 89.99193 * 13 12 11 16 16 C 1.52596 * 111.01936 * 197.03974 * 15 13 12 17 17 C 1.53321 * 108.45340 * 62.28819 * 16 15 13 18 18 C 1.52812 * 108.15300 * 296.15441 * 17 16 15 19 19 H 1.09004 * 109.03745 * 179.63596 * 18 17 16 20 20 N 1.46507 * 109.04309 * 298.57873 * 18 17 16 21 21 C 1.36935 * 120.00002 * 276.04906 * 20 18 17 22 22 H 1.08008 * 120.00084 * 359.72158 * 21 20 18 23 23 C 1.38807 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99822 * 359.72167 * 23 21 20 25 25 Si 1.86806 * 120.00315 * 179.72378 * 23 21 20 26 26 H 1.48498 * 109.46824 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47275 * 119.99757 * 25 23 21 28 28 H 1.48492 * 109.47289 * 240.00018 * 25 23 21 29 29 C 1.50853 * 111.61012 * 59.10533 * 18 17 16 30 30 H 1.08997 * 109.65264 * 184.93275 * 29 18 17 31 31 C 1.47928 * 125.74698 * 174.76481 * 11 9 8 32 32 H 1.09001 * 109.46683 * 299.99847 * 1 2 3 33 33 H 1.08993 * 109.47065 * 59.99590 * 1 2 3 34 34 H 1.08998 * 109.46721 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47161 * 240.00284 * 2 1 3 36 36 H 1.08997 * 109.47415 * 120.00043 * 2 1 3 37 37 H 1.07998 * 118.95627 * 179.67889 * 5 4 3 38 38 H 1.07999 * 120.53815 * 180.02562 * 7 6 5 39 39 H 1.08998 * 110.00305 * 61.70696 * 12 11 9 40 40 H 1.09003 * 110.04366 * 300.36717 * 12 11 9 41 41 H 1.09002 * 109.16955 * 76.64552 * 15 13 12 42 42 H 1.08996 * 109.16876 * 317.43708 * 15 13 12 43 43 H 1.09000 * 109.63802 * 302.60634 * 16 15 13 44 44 H 1.08992 * 109.81671 * 182.08233 * 16 15 13 45 45 H 1.09005 * 109.72148 * 176.48935 * 17 16 15 46 46 H 1.08998 * 109.76080 * 55.84369 * 17 16 15 47 47 H 0.97002 * 119.99994 * 96.04218 * 20 18 17 48 48 H 0.97000 * 119.99749 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.56830 * 323.08989 * 31 11 9 50 50 H 1.09002 * 110.57366 * 85.95634 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.1491 2.0919 -1.1326 5 6 2.5937 3.3331 -1.1431 6 7 2.9349 3.9646 -0.0366 7 6 2.8442 3.3712 1.1405 8 6 2.3772 2.0530 1.1998 9 6 2.2575 1.3466 2.4928 10 8 1.2612 0.6954 2.7397 11 7 3.2530 1.4246 3.3981 12 6 4.5548 2.0839 3.1915 13 6 5.3686 1.8882 4.5012 14 1 6.0238 2.7326 4.7154 15 6 6.1458 0.5806 4.3371 16 6 6.6438 0.0670 5.6850 17 6 5.4278 -0.2318 6.5698 18 6 4.6909 1.0822 6.8259 19 1 3.8187 0.8851 7.4493 20 7 5.5855 2.0019 7.5333 21 6 5.7070 1.9270 8.8952 22 1 5.1399 1.1928 9.4484 23 6 6.5550 2.7980 9.5653 24 7 7.2464 3.6923 8.8911 25 14 6.7149 2.7009 11.4239 26 1 5.8384 1.6191 11.9403 27 1 8.1258 2.4102 11.7849 28 1 6.3073 3.9965 12.0242 29 6 4.2404 1.7266 5.5385 30 1 3.7979 2.6998 5.7510 31 6 3.2227 0.8635 4.7665 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.6811 3.8492 -2.0877 38 1 3.1251 3.8950 2.0422 39 1 4.4081 3.1466 2.9989 40 1 5.0787 1.6223 2.3545 41 1 6.9998 0.7517 3.6817 42 1 5.4947 -0.1687 3.8870 43 1 7.2644 0.8268 6.1600 44 1 7.2251 -0.8437 5.5416 45 1 5.7579 -0.6592 7.5167 46 1 4.7652 -0.9322 6.0612 47 1 6.0918 2.6638 7.0369 48 1 7.8387 4.3012 9.3594 49 1 2.2274 0.9636 5.1995 50 1 3.5349 -0.1809 4.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992918081.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:07 Heat of formation + Delta-G solvation = 21.724327 kcal Electronic energy + Delta-G solvation = -31101.487182 eV Core-core repulsion = 27128.612580 eV Total energy + Delta-G solvation = -3972.874602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70581 -40.46394 -38.67621 -35.89831 -35.22036 -33.54529 -33.22661 -31.62670 -31.47368 -30.33372 -29.35640 -26.70152 -25.92299 -25.39210 -24.37149 -22.94814 -22.26131 -21.97492 -21.11988 -19.95003 -18.37609 -18.17567 -17.36064 -17.25248 -17.00352 -16.23603 -15.77683 -15.32228 -14.81267 -14.70057 -14.58179 -14.19946 -14.03542 -13.88556 -13.70746 -13.62382 -13.34654 -13.03110 -12.85180 -12.83178 -12.56043 -11.98479 -11.85080 -11.74324 -11.66472 -11.44110 -11.28700 -11.20298 -11.01640 -10.92117 -10.89502 -10.75974 -10.25936 -10.15884 -10.08387 -9.87547 -9.81418 -9.64818 -9.63127 -9.54410 -8.90774 -8.72851 -7.00049 -5.81383 -3.09447 0.19943 0.65013 2.43054 2.72319 3.36892 3.40212 3.46786 3.48297 3.60888 3.74516 3.96947 4.13307 4.47701 4.51108 4.54565 4.75032 4.83862 4.90953 4.95516 5.05971 5.15376 5.22672 5.31938 5.34998 5.44381 5.49409 5.54655 5.67430 5.67989 5.71346 5.74281 5.79088 5.82709 5.87698 5.90374 5.96990 6.04141 6.07217 6.13502 6.26036 6.32360 6.36103 6.45901 6.52867 6.74978 6.79354 6.97198 7.04903 7.30444 7.64432 7.67523 7.87634 8.37311 9.49314 10.05345 10.40622 11.41238 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.002586 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.101837 B =10825.704689 C =11250.644845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C 0.229 3.771 4 N -0.521 5.521 5 C 0.311 3.689 6 N -0.523 5.523 7 C 0.183 3.817 8 C -0.231 4.231 9 C 0.582 3.418 10 O -0.524 6.524 11 N -0.608 5.608 12 C 0.094 3.906 13 C -0.085 4.085 14 H 0.104 0.896 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.135 4.135 18 C 0.189 3.811 19 H 0.048 0.952 20 N -0.719 5.719 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.095 4.095 30 H 0.082 0.918 31 C 0.115 3.885 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.201 0.799 38 H 0.176 0.824 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.080 0.920 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -4.903 -19.586 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C 0.082 3.918 4 N -0.234 5.234 5 C 0.024 3.976 6 N -0.236 5.236 7 C 0.017 3.983 8 C -0.238 4.238 9 C 0.369 3.631 10 O -0.401 6.401 11 N -0.341 5.341 12 C -0.029 4.029 13 C -0.103 4.103 14 H 0.122 0.878 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.175 4.175 18 C 0.078 3.922 19 H 0.066 0.934 20 N -0.361 5.361 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 C -0.115 4.115 30 H 0.100 0.900 31 C -0.007 4.007 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.218 0.782 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.337 -4.800 -20.204 22.377 hybrid contribution 0.447 0.042 1.592 1.654 sum -7.890 -4.757 -18.612 20.767 Atomic orbital electron populations 1.21630 0.92732 1.02660 1.02576 1.20638 0.97904 0.88935 1.04081 1.21889 0.86734 0.96617 0.86596 1.68347 1.15878 1.09727 1.29493 1.25211 0.87792 0.87357 0.97233 1.68489 1.17810 1.38300 0.99048 1.23630 0.87677 0.90283 0.96709 1.21623 1.07705 0.98335 0.96167 1.17364 0.82521 0.80815 0.82425 1.90802 1.29934 1.41338 1.78047 1.48611 1.15206 1.55557 1.14720 1.22727 0.83484 0.97124 0.99577 1.22252 0.96299 0.99616 0.92182 0.87790 1.21528 0.98887 0.95888 0.98329 1.21386 0.98333 1.00711 0.94592 1.22205 0.97174 0.98698 0.99420 1.19516 0.93160 0.89719 0.89762 0.93389 1.42391 1.50535 1.38891 1.04258 1.19266 1.20312 1.13830 0.83248 0.91172 1.24702 0.99833 0.98605 0.97725 1.69657 1.31451 1.22799 1.34212 0.86164 0.77313 0.77174 0.85819 1.20603 1.21957 1.21965 1.21896 0.94403 0.99983 0.95243 0.89973 1.22405 1.00505 0.98076 0.79729 0.91320 0.92644 0.91597 0.89564 0.89225 0.78239 0.80741 0.91451 0.91330 0.92586 0.92686 0.90134 0.93399 0.91786 0.93750 0.78222 0.93608 0.90188 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.76 37.16 0.36 -0.95 16 2 C -0.08 -0.77 5.57 -27.88 -0.16 -0.93 16 3 C 0.23 2.54 6.11 -81.82 -0.50 2.04 16 4 N -0.52 -5.54 10.36 -10.48 -0.11 -5.65 16 5 C 0.31 2.90 12.27 -92.03 -1.13 1.77 16 6 N -0.52 -5.48 10.42 -14.24 -0.15 -5.63 16 7 C 0.18 1.92 9.76 -16.77 -0.16 1.75 16 8 C -0.23 -2.64 5.41 -104.69 -0.57 -3.21 16 9 C 0.58 7.49 6.69 -12.34 -0.08 7.41 16 10 O -0.52 -7.98 14.66 5.32 0.08 -7.90 16 11 N -0.61 -7.34 3.34 -170.70 -0.57 -7.91 16 12 C 0.09 1.00 5.23 -2.27 -0.01 0.99 16 13 C -0.08 -1.08 3.27 -88.75 -0.29 -1.37 16 14 H 0.10 1.42 7.93 -51.93 -0.41 1.01 16 15 C -0.11 -1.37 4.60 -26.94 -0.12 -1.49 16 16 C -0.11 -1.71 5.85 -26.77 -0.16 -1.87 16 17 C -0.13 -2.17 5.42 -26.66 -0.14 -2.31 16 18 C 0.19 3.31 2.53 -69.10 -0.18 3.14 16 19 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 20 N -0.72 -16.17 4.17 -54.57 -0.23 -16.39 16 21 C -0.24 -6.10 9.90 -15.06 -0.15 -6.25 16 22 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 25 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C -0.10 -1.37 2.42 -90.51 -0.22 -1.59 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 C 0.11 1.49 5.79 -2.65 -0.02 1.47 16 32 H 0.07 0.78 7.18 -51.93 -0.37 0.41 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.97 6.41 -51.93 -0.33 0.64 16 37 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.18 1.56 6.22 -52.49 -0.33 1.24 16 39 H 0.07 0.64 5.81 -51.93 -0.30 0.34 16 40 H 0.07 0.69 7.77 -51.93 -0.40 0.28 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.67 6.93 -51.93 -0.36 0.31 16 43 H 0.08 1.48 7.38 -51.93 -0.38 1.10 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.04 0.62 6.69 -51.93 -0.35 0.27 16 47 H 0.38 9.13 7.22 -40.82 -0.29 8.84 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 50 H 0.08 0.98 5.78 -51.93 -0.30 0.68 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -30.07 385.64 -10.68 -40.75 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.60 Total: 8.13 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.62 Total: -1.83 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.33 Total: -61.62 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.07 -10.68 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992918081.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.473 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds