Wall clock time and date at job start Wed Apr 1 2020 03:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47072 * 2 1 4 4 N 1.32160 * 120.53935 * 275.72829 * 3 2 1 5 5 C 1.31850 * 120.96826 * 180.32778 * 4 3 2 6 6 N 1.31884 * 122.09308 * 359.66598 * 5 4 3 7 7 C 1.32132 * 120.97028 * 0.02562 * 6 5 4 8 8 C 1.39929 * 120.53414 * 95.44410 * 3 2 1 9 9 C 1.47828 * 120.94134 * 359.97438 * 8 3 2 10 10 O 1.21553 * 120.00074 * 315.18080 * 9 8 3 11 11 N 1.34781 * 120.00305 * 135.18707 * 9 8 3 12 12 C 1.47380 * 125.74198 * 354.79956 * 11 9 8 13 13 C 1.55435 * 106.73891 * 181.02783 * 12 11 9 14 14 H 1.09005 * 112.50205 * 213.26893 * 13 12 11 15 15 C 1.52991 * 106.45205 * 89.99193 * 13 12 11 16 16 C 1.52596 * 111.01936 * 197.03974 * 15 13 12 17 17 C 1.53321 * 108.45340 * 62.28819 * 16 15 13 18 18 C 1.52812 * 108.15300 * 296.15441 * 17 16 15 19 19 H 1.09004 * 109.03745 * 179.63596 * 18 17 16 20 20 N 1.46507 * 109.04309 * 298.57873 * 18 17 16 21 21 C 1.36935 * 120.00002 * 276.04906 * 20 18 17 22 22 H 1.08008 * 120.00084 * 359.72158 * 21 20 18 23 23 C 1.38807 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99822 * 359.72167 * 23 21 20 25 25 Si 1.86806 * 120.00315 * 179.72378 * 23 21 20 26 26 H 1.48498 * 109.46824 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47275 * 119.99757 * 25 23 21 28 28 H 1.48492 * 109.47289 * 240.00018 * 25 23 21 29 29 C 1.50853 * 111.61012 * 59.10533 * 18 17 16 30 30 H 1.08997 * 109.65264 * 184.93275 * 29 18 17 31 31 C 1.47928 * 125.74698 * 174.76481 * 11 9 8 32 32 H 1.09001 * 109.46683 * 299.99847 * 1 2 3 33 33 H 1.08993 * 109.47065 * 59.99590 * 1 2 3 34 34 H 1.08998 * 109.46721 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47161 * 240.00284 * 2 1 3 36 36 H 1.08997 * 109.47415 * 120.00043 * 2 1 3 37 37 H 1.07998 * 118.95627 * 179.67889 * 5 4 3 38 38 H 1.07999 * 120.53815 * 180.02562 * 7 6 5 39 39 H 1.08998 * 110.00305 * 61.70696 * 12 11 9 40 40 H 1.09003 * 110.04366 * 300.36717 * 12 11 9 41 41 H 1.09002 * 109.16955 * 76.64552 * 15 13 12 42 42 H 1.08996 * 109.16876 * 317.43708 * 15 13 12 43 43 H 1.09000 * 109.63802 * 302.60634 * 16 15 13 44 44 H 1.08992 * 109.81671 * 182.08233 * 16 15 13 45 45 H 1.09005 * 109.72148 * 176.48935 * 17 16 15 46 46 H 1.08998 * 109.76080 * 55.84369 * 17 16 15 47 47 H 0.97002 * 119.99994 * 96.04218 * 20 18 17 48 48 H 0.97000 * 119.99749 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.56830 * 323.08989 * 31 11 9 50 50 H 1.09002 * 110.57366 * 85.95634 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.1491 2.0919 -1.1326 5 6 2.5937 3.3331 -1.1431 6 7 2.9349 3.9646 -0.0366 7 6 2.8442 3.3712 1.1405 8 6 2.3772 2.0530 1.1998 9 6 2.2575 1.3466 2.4928 10 8 1.2612 0.6954 2.7397 11 7 3.2530 1.4246 3.3981 12 6 4.5548 2.0839 3.1915 13 6 5.3686 1.8882 4.5012 14 1 6.0238 2.7326 4.7154 15 6 6.1458 0.5806 4.3371 16 6 6.6438 0.0670 5.6850 17 6 5.4278 -0.2318 6.5698 18 6 4.6909 1.0822 6.8259 19 1 3.8187 0.8851 7.4493 20 7 5.5855 2.0019 7.5333 21 6 5.7070 1.9270 8.8952 22 1 5.1399 1.1928 9.4484 23 6 6.5550 2.7980 9.5653 24 7 7.2464 3.6923 8.8911 25 14 6.7149 2.7009 11.4239 26 1 5.8384 1.6191 11.9403 27 1 8.1258 2.4102 11.7849 28 1 6.3073 3.9965 12.0242 29 6 4.2404 1.7266 5.5385 30 1 3.7979 2.6998 5.7510 31 6 3.2227 0.8635 4.7665 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.6811 3.8492 -2.0877 38 1 3.1251 3.8950 2.0422 39 1 4.4081 3.1466 2.9989 40 1 5.0787 1.6223 2.3545 41 1 6.9998 0.7517 3.6817 42 1 5.4947 -0.1687 3.8870 43 1 7.2644 0.8268 6.1600 44 1 7.2251 -0.8437 5.5416 45 1 5.7579 -0.6592 7.5167 46 1 4.7652 -0.9322 6.0612 47 1 6.0918 2.6638 7.0369 48 1 7.8387 4.3012 9.3594 49 1 2.2274 0.9636 5.1995 50 1 3.5349 -0.1809 4.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992918081.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:06 Heat of formation + Delta-G solvation = 5.008719 kcal Electronic energy + Delta-G solvation = -31102.212025 eV Core-core repulsion = 27128.612580 eV Total energy + Delta-G solvation = -3973.599445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.54768 -41.51766 -39.76167 -37.13253 -36.10264 -35.08798 -34.09939 -33.10800 -32.45468 -31.38919 -30.84878 -27.96609 -26.86955 -26.17861 -25.82803 -24.35209 -23.24270 -22.98542 -22.32977 -20.91091 -19.47748 -19.18978 -19.10797 -18.21689 -17.91236 -17.34548 -16.80827 -16.51697 -16.16455 -15.82062 -15.52836 -15.33540 -15.25177 -15.16433 -14.93193 -14.63630 -14.38278 -14.20207 -14.11627 -13.77390 -13.57623 -13.27467 -12.95854 -12.82739 -12.78283 -12.67977 -12.59342 -12.58193 -12.40435 -12.13803 -12.00484 -11.99555 -11.77796 -11.70854 -11.33849 -11.17413 -11.05926 -10.86642 -10.71438 -10.66795 -10.42035 -9.72674 -8.92294 -7.89568 -5.14916 -0.59184 -0.14324 1.47876 1.48084 1.49710 1.57944 1.74619 2.58318 2.59323 2.87523 3.03975 3.19168 3.22319 3.42837 3.44787 3.58547 3.73895 3.80654 4.07905 4.12908 4.17746 4.24678 4.29646 4.31277 4.35703 4.41440 4.46935 4.53865 4.60786 4.63485 4.69890 4.76464 4.79452 4.83871 4.90213 4.95718 5.03970 5.08616 5.09237 5.17345 5.19331 5.27731 5.31178 5.41897 5.48618 5.56402 5.65237 5.74070 5.74762 6.31832 6.34564 6.87499 6.90311 7.41165 8.17872 8.41832 9.33781 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.002586 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.101837 B =10825.704689 C =11250.644845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 C 0.224 3.776 4 N -0.529 5.529 5 C 0.314 3.686 6 N -0.534 5.534 7 C 0.187 3.813 8 C -0.243 4.243 9 C 0.586 3.414 10 O -0.552 6.552 11 N -0.605 5.605 12 C 0.101 3.899 13 C -0.083 4.083 14 H 0.093 0.907 15 C -0.101 4.101 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.186 3.814 19 H 0.036 0.964 20 N -0.727 5.727 21 C -0.227 4.227 22 H 0.071 0.929 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.961 3.039 26 H -0.270 1.270 27 H -0.297 1.297 28 H -0.298 1.298 29 C -0.089 4.089 30 H 0.068 0.932 31 C 0.124 3.876 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.235 0.765 38 H 0.187 0.813 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.376 0.624 48 H 0.248 0.752 49 H 0.073 0.927 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -5.595 -21.707 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C 0.077 3.923 4 N -0.243 5.243 5 C 0.028 3.972 6 N -0.247 5.247 7 C 0.020 3.980 8 C -0.251 4.251 9 C 0.373 3.627 10 O -0.431 6.431 11 N -0.338 5.338 12 C -0.021 4.021 13 C -0.102 4.102 14 H 0.111 0.889 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.078 3.922 19 H 0.054 0.946 20 N -0.367 5.367 21 C -0.360 4.360 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.225 1.225 28 H -0.225 1.225 29 C -0.109 4.109 30 H 0.086 0.914 31 C 0.001 3.999 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.204 0.796 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.208 0.792 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.739 -5.524 -22.343 24.619 hybrid contribution 0.508 0.227 2.197 2.266 sum -8.231 -5.297 -20.146 22.399 Atomic orbital electron populations 1.21573 0.92575 1.03277 1.01596 1.20650 0.97954 0.88564 1.04262 1.22091 0.86377 0.97118 0.86741 1.68430 1.16441 1.10339 1.29124 1.25934 0.86109 0.86978 0.98178 1.68578 1.18395 1.38464 0.99308 1.23818 0.86964 0.89870 0.97310 1.21497 1.09336 0.98810 0.95461 1.17530 0.81984 0.80384 0.82782 1.90791 1.30969 1.42664 1.78667 1.48570 1.15619 1.55443 1.14125 1.22732 0.82468 0.98230 0.98665 1.22183 0.95851 0.99564 0.92624 0.88858 1.21476 0.99662 0.95768 0.96908 1.21313 0.97458 1.00301 0.95589 1.22088 0.97897 0.97927 0.98904 1.19680 0.91935 0.89842 0.90781 0.94553 1.42516 1.51176 1.39594 1.03418 1.19575 1.18845 1.12630 0.84915 0.91131 1.25363 1.00644 0.99201 1.01307 1.69787 1.32691 1.23935 1.35308 0.85245 0.76909 0.76965 0.81711 1.19429 1.22452 1.22514 1.21653 0.95604 0.99198 0.94398 0.91388 1.22221 0.99532 0.97992 0.80128 0.93525 0.92229 0.90247 0.88056 0.90248 0.74907 0.79636 0.89915 0.89598 0.90880 0.91337 0.93769 0.92031 0.94216 0.90969 0.79157 0.94292 0.90873 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.76 71.98 0.70 -1.67 16 2 C -0.08 -1.40 5.57 29.85 0.17 -1.23 16 3 C 0.22 4.57 6.11 42.92 0.26 4.83 16 4 N -0.53 -10.02 10.36 -187.06 -1.94 -11.96 16 5 C 0.31 4.99 12.27 180.84 2.22 7.21 16 6 N -0.53 -9.89 10.42 -198.98 -2.07 -11.97 16 7 C 0.19 3.51 9.76 85.07 0.83 4.34 16 8 C -0.24 -5.15 5.41 -19.91 -0.11 -5.26 16 9 C 0.59 14.27 6.69 86.78 0.58 14.85 16 10 O -0.55 -16.42 14.66 -3.88 -0.06 -16.48 16 11 N -0.61 -13.52 3.34 -812.24 -2.72 -16.23 16 12 C 0.10 1.92 5.23 87.05 0.46 2.37 16 13 C -0.08 -2.00 3.27 -9.58 -0.03 -2.03 16 14 H 0.09 2.50 7.93 -2.38 -0.02 2.48 16 15 C -0.10 -2.31 4.60 30.46 0.14 -2.17 16 16 C -0.11 -3.20 5.85 30.57 0.18 -3.03 16 17 C -0.13 -4.04 5.42 30.64 0.17 -3.87 16 18 C 0.19 6.56 2.53 44.23 0.11 6.67 16 19 H 0.04 1.36 8.07 -2.38 -0.02 1.34 16 20 N -0.73 -33.34 4.17 -326.55 -1.36 -34.71 16 21 C -0.23 -11.97 9.90 84.03 0.83 -11.14 16 22 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 24 N -0.97 -56.77 13.06 21.65 0.28 -56.49 16 25 Si 0.96 45.29 29.55 68.60 2.03 47.32 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 29 C -0.09 -2.50 2.42 -10.72 -0.03 -2.52 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 C 0.12 3.04 5.79 86.50 0.50 3.54 16 32 H 0.05 1.04 7.18 -2.39 -0.02 1.03 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.63 6.41 -2.39 -0.02 1.61 16 37 H 0.23 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.19 2.91 6.22 -2.91 -0.02 2.90 16 39 H 0.08 1.36 5.81 -2.39 -0.01 1.34 16 40 H 0.09 1.41 7.77 -2.39 -0.02 1.39 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.43 6.93 -2.39 -0.02 1.41 16 43 H 0.04 1.64 7.38 -2.39 -0.02 1.62 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.07 1.88 6.69 -2.39 -0.02 1.87 16 47 H 0.38 18.40 7.22 -92.71 -0.67 17.73 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 50 H 0.08 1.96 5.78 -2.39 -0.01 1.95 16 Total: -1.00 -65.54 385.64 1.91 -63.63 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.29 Total: 29.54 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 7.45 Total: 7.33 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -7.81 Total: -131.35 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.06 Total: -16.48 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.54 1.91 -63.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992918081.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.641 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds