Wall clock time and date at job start Wed Apr 1 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30786 * 125.71894 * 2 1 4 4 C 1.34427 * 109.31847 * 179.97438 * 3 2 1 5 5 C 1.33864 * 107.79983 * 359.97438 * 4 3 2 6 6 N 1.34411 * 125.72502 * 180.02562 * 2 1 3 7 7 C 1.46469 * 128.44393 * 0.10326 * 6 2 1 8 8 C 1.53275 * 108.69690 * 162.71310 * 7 6 2 9 9 H 1.08996 * 109.43232 * 290.71150 * 8 7 6 10 10 C 1.50704 * 109.42856 * 170.81480 * 8 7 6 11 11 O 1.21275 * 120.00128 * 359.90114 * 10 8 7 12 12 N 1.34776 * 119.99706 * 179.89995 * 10 8 7 13 13 C 1.46505 * 119.99884 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47224 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69084 * 95.00223 * 14 13 12 16 16 C 1.50332 * 123.64825 * 180.85930 * 15 14 13 17 17 N 1.47004 * 109.21892 * 348.99060 * 16 15 14 18 18 C 1.36935 * 121.37864 * 222.95959 * 17 16 15 19 19 H 1.07993 * 120.00446 * 155.96372 * 18 17 16 20 20 C 1.38814 * 119.99501 * 335.96604 * 18 17 16 21 21 N 1.31618 * 120.00190 * 344.50950 * 20 18 17 22 22 Si 1.86800 * 119.99878 * 164.51473 * 20 18 17 23 23 H 1.48500 * 109.47208 * 89.99580 * 22 20 18 24 24 H 1.48503 * 109.47067 * 209.99733 * 22 20 18 25 25 H 1.48500 * 109.46861 * 329.99738 * 22 20 18 26 26 C 1.47463 * 117.17385 * 42.91761 * 17 16 15 27 27 C 1.49970 * 117.69674 * 274.98165 * 14 13 12 28 28 C 1.53118 * 109.67418 * 50.76654 * 8 7 6 29 29 C 1.50706 * 128.67995 * 180.15287 * 5 4 3 30 30 H 1.08997 * 109.47242 * 269.96170 * 1 2 3 31 31 H 1.09005 * 109.47164 * 29.96807 * 1 2 3 32 32 H 1.09010 * 109.46868 * 149.96238 * 1 2 3 33 33 H 1.07998 * 126.09951 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.59899 * 42.94468 * 7 6 2 35 35 H 1.09004 * 109.72773 * 282.55747 * 7 6 2 36 36 H 0.97000 * 120.00645 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.47003 * 60.00258 * 13 12 10 38 38 H 1.09000 * 109.47625 * 300.00339 * 13 12 10 39 39 H 1.07995 * 118.17769 * 0.88265 * 15 14 13 40 40 H 1.08997 * 109.52035 * 108.92971 * 16 15 14 41 41 H 1.08996 * 109.51770 * 229.05338 * 16 15 14 42 42 H 0.97001 * 119.99771 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.74721 * 178.65167 * 26 17 16 44 44 H 1.09006 * 109.82605 * 57.88953 * 26 17 16 45 45 H 1.08998 * 109.31119 * 281.28977 * 27 14 13 46 46 H 1.09001 * 109.31388 * 40.71584 * 27 14 13 47 47 H 1.08995 * 109.49942 * 50.01843 * 28 8 7 48 48 H 1.09001 * 109.49487 * 170.11888 * 28 8 7 49 49 H 1.08998 * 109.74623 * 283.78548 * 29 5 4 50 50 H 1.08996 * 109.74951 * 44.51278 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6823 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8923 -2.5003 -0.0032 8 6 3.0926 -3.3506 -0.4341 9 1 3.3040 -3.1714 -1.4883 10 6 2.7738 -4.8089 -0.2276 11 8 1.6957 -5.1364 0.2210 12 7 3.6868 -5.7493 -0.5416 13 6 3.3772 -7.1670 -0.3403 14 6 4.5555 -8.0040 -0.7668 15 6 5.4000 -8.3635 0.1462 16 6 6.6299 -9.1817 -0.1324 17 7 6.5615 -9.7065 -1.5039 18 6 6.9109 -10.9991 -1.7909 19 1 6.5097 -11.4849 -2.6680 20 6 7.7808 -11.6849 -0.9544 21 7 8.5033 -11.0260 -0.0734 22 14 7.9261 -13.5431 -1.0791 23 1 8.9870 -13.8921 -2.0578 24 1 8.2764 -14.1026 0.2512 25 1 6.6304 -14.1117 -1.5298 26 6 6.1000 -8.7825 -2.5563 27 6 4.6670 -8.3623 -2.2188 28 6 4.3182 -2.9736 0.4026 29 6 4.7919 -1.5688 0.0056 30 1 -0.3633 -0.0007 1.0276 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5145 33 1 4.4169 1.3397 0.0003 34 1 1.0703 -2.6460 -0.7042 35 1 1.5758 -2.7949 0.9974 36 1 4.5492 -5.4874 -0.9001 37 1 2.5056 -7.4368 -0.9367 38 1 3.1658 -7.3468 0.7138 39 1 5.2101 -8.0589 1.1648 40 1 7.5157 -8.5556 -0.0257 41 1 6.6830 -10.0111 0.5728 42 1 9.1109 -11.5054 0.5114 43 1 6.1186 -9.2862 -3.5228 44 1 6.7447 -7.9041 -2.5858 45 1 3.9882 -9.1859 -2.4400 46 1 4.3920 -7.4993 -2.8252 47 1 4.0538 -2.9830 1.4599 48 1 5.1178 -3.6918 0.2206 49 1 5.2359 -1.5980 -0.9895 50 1 5.5260 -1.2094 0.7266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001086395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:46 Heat of formation + Delta-G solvation = 52.871180 kcal Electronic energy + Delta-G solvation = -29689.938713 eV Core-core repulsion = 25718.414740 eV Total energy + Delta-G solvation = -3971.523973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.68494 -40.20396 -37.97342 -36.60599 -35.15856 -33.69643 -33.02617 -31.64994 -30.90824 -30.25078 -29.79627 -27.18773 -26.72667 -25.09840 -23.90475 -22.88126 -22.73095 -21.37157 -21.13121 -20.39577 -19.30132 -17.90456 -17.57473 -16.86272 -16.29685 -16.12510 -15.76959 -15.46768 -15.11728 -14.84985 -14.44245 -14.25117 -14.22500 -14.01505 -13.86147 -13.60994 -13.46627 -13.29868 -13.28233 -12.99614 -12.69392 -12.37192 -12.28617 -12.19976 -12.12752 -11.66876 -11.60316 -11.47028 -11.39960 -10.99057 -10.79212 -10.51234 -10.40207 -10.17837 -10.11269 -9.91301 -9.76999 -9.69589 -9.17551 -8.76843 -8.44196 -8.17589 -6.83557 -5.87918 -3.26749 1.76590 2.26953 2.33592 2.55354 2.88169 3.30826 3.32749 3.39937 3.42057 3.85809 4.13873 4.19005 4.24985 4.38839 4.42503 4.66026 4.78496 4.79492 4.87709 5.00029 5.03570 5.13314 5.20078 5.22200 5.24876 5.31024 5.37828 5.40144 5.47821 5.51235 5.62298 5.65783 5.68981 5.80208 5.95376 6.04739 6.12698 6.22200 6.25857 6.40348 6.51279 6.62920 6.76159 6.93311 7.04882 7.14374 7.20259 7.34715 7.63293 7.73067 7.85239 7.96656 8.29482 9.11126 9.73655 10.31348 11.22629 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027875 B = 0.001899 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.235942 B =14743.914528 C =15213.148915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.208 3.792 3 N -0.495 5.495 4 C -0.022 4.022 5 C -0.029 4.029 6 N -0.451 5.451 7 C 0.124 3.876 8 C -0.120 4.120 9 H 0.109 0.891 10 C 0.520 3.480 11 O -0.544 6.544 12 N -0.714 5.714 13 C 0.157 3.843 14 C -0.169 4.169 15 C -0.121 4.121 16 C 0.193 3.807 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.069 0.931 20 C -0.001 4.001 21 N -0.910 5.910 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.144 3.856 27 C -0.090 4.090 28 C -0.118 4.118 29 C -0.043 4.043 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.169 0.831 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 19.562 0.072 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.054 4.054 3 N -0.214 5.214 4 C -0.169 4.169 5 C -0.143 4.143 6 N -0.135 5.135 7 C 0.002 3.998 8 C -0.142 4.142 9 H 0.127 0.873 10 C 0.305 3.695 11 O -0.422 6.422 12 N -0.364 5.364 13 C 0.035 3.965 14 C -0.169 4.169 15 C -0.142 4.142 16 C 0.068 3.932 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.199 4.199 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.129 4.129 28 C -0.156 4.156 29 C -0.081 4.081 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.238 0.762 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.902 19.870 0.501 23.167 hybrid contribution 0.853 -1.703 -0.110 1.908 sum -11.049 18.167 0.391 21.267 Atomic orbital electron populations 1.20188 0.84950 1.03973 1.03577 1.23123 0.95642 0.81095 1.05538 1.70458 1.02022 1.27996 1.20966 1.21823 0.94827 0.91940 1.08347 1.21144 0.85603 0.95484 1.12100 1.45268 1.06422 1.07119 1.54685 1.21680 0.97003 0.76603 1.04542 1.21576 0.96711 0.92621 1.03311 0.87345 1.20126 0.84433 0.87020 0.77914 1.90723 1.23560 1.82777 1.45109 1.46180 1.18370 1.06791 1.65100 1.20504 0.97023 0.78224 1.00786 1.20477 0.96987 1.02761 0.96709 1.23312 0.97183 0.96369 0.97337 1.19769 0.89860 0.95806 0.87769 1.44143 1.77144 1.09019 1.01496 1.19161 1.20953 0.87327 1.10177 0.91357 1.24993 0.96360 0.98539 1.00007 1.69999 1.26512 1.34082 1.24877 0.86255 0.77866 0.85398 0.77025 1.21386 1.21532 1.20516 1.20970 0.91355 0.93202 0.92778 1.20751 1.00530 0.99529 0.92082 1.21695 0.96180 0.97464 1.00220 1.20222 0.93045 0.91588 1.03272 0.90140 0.89183 0.90837 0.81352 0.88489 0.88524 0.76211 0.91434 0.91493 0.88770 0.94028 0.88830 0.93552 0.92419 0.95923 0.91718 0.92934 0.90554 0.89519 0.89566 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.24 36.01 0.37 -0.11 16 2 C 0.21 2.20 7.94 -155.75 -1.24 0.96 16 3 N -0.49 -6.16 11.27 -11.02 -0.12 -6.29 16 4 C -0.02 -0.23 11.84 -17.95 -0.21 -0.45 16 5 C -0.03 -0.28 6.57 -81.73 -0.54 -0.81 16 6 N -0.45 -4.38 3.13 -109.43 -0.34 -4.72 16 7 C 0.12 1.06 5.39 -3.92 -0.02 1.04 16 8 C -0.12 -0.96 2.52 -91.57 -0.23 -1.19 16 9 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 10 C 0.52 5.64 7.15 -10.98 -0.08 5.56 16 11 O -0.54 -7.80 15.83 5.56 0.09 -7.71 16 12 N -0.71 -7.64 5.37 -61.47 -0.33 -7.97 16 13 C 0.16 2.07 5.66 -5.19 -0.03 2.04 16 14 C -0.17 -2.61 5.22 -100.99 -0.53 -3.14 16 15 C -0.12 -2.12 9.47 -35.78 -0.34 -2.46 16 16 C 0.19 4.30 5.22 -5.10 -0.03 4.28 16 17 N -0.59 -14.13 3.01 -173.57 -0.52 -14.65 16 18 C -0.25 -6.53 9.71 -15.06 -0.15 -6.67 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 20 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 21 N -0.91 -25.36 11.08 55.49 0.61 -24.75 16 22 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.14 2.77 6.58 -3.46 -0.02 2.74 16 27 C -0.09 -1.43 5.95 -28.19 -0.17 -1.60 16 28 C -0.12 -0.82 5.22 -26.42 -0.14 -0.95 16 29 C -0.04 -0.28 6.31 -27.63 -0.17 -0.46 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.41 7.59 -51.92 -0.39 0.01 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.10 0.76 7.72 -51.93 -0.40 0.36 16 35 H 0.10 0.89 7.81 -51.93 -0.41 0.49 16 36 H 0.40 3.67 7.79 -40.82 -0.32 3.35 16 37 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.07 0.93 7.78 -51.93 -0.40 0.52 16 39 H 0.09 1.47 7.73 -52.49 -0.41 1.06 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 2.36 6.41 -51.93 -0.33 2.03 16 42 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.06 1.09 7.97 -51.93 -0.41 0.68 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 48 H 0.09 0.53 7.30 -51.93 -0.38 0.15 16 49 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -32.31 398.43 -11.32 -43.63 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.07 Total: 1.66 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.61 Total: -1.33 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.71 Total: -58.38 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.31 -11.32 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001086395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.503 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds