Wall clock time and date at job start Wed Apr 1 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30786 * 125.71894 * 2 1 4 4 C 1.34427 * 109.31847 * 179.97438 * 3 2 1 5 5 C 1.33864 * 107.79983 * 359.97438 * 4 3 2 6 6 N 1.34411 * 125.72502 * 180.02562 * 2 1 3 7 7 C 1.46469 * 128.44393 * 0.10326 * 6 2 1 8 8 C 1.53275 * 108.69690 * 162.71310 * 7 6 2 9 9 H 1.08996 * 109.43232 * 290.71150 * 8 7 6 10 10 C 1.50704 * 109.42856 * 170.81480 * 8 7 6 11 11 O 1.21275 * 120.00128 * 359.90114 * 10 8 7 12 12 N 1.34776 * 119.99706 * 179.89995 * 10 8 7 13 13 C 1.46505 * 119.99884 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47224 * 179.97438 * 13 12 10 15 15 C 1.29453 * 117.69084 * 95.00223 * 14 13 12 16 16 C 1.50332 * 123.64825 * 180.85930 * 15 14 13 17 17 N 1.47004 * 109.21892 * 348.99060 * 16 15 14 18 18 C 1.36935 * 121.37864 * 222.95959 * 17 16 15 19 19 H 1.07993 * 120.00446 * 155.96372 * 18 17 16 20 20 C 1.38814 * 119.99501 * 335.96604 * 18 17 16 21 21 N 1.31618 * 120.00190 * 344.50950 * 20 18 17 22 22 Si 1.86800 * 119.99878 * 164.51473 * 20 18 17 23 23 H 1.48500 * 109.47208 * 89.99580 * 22 20 18 24 24 H 1.48503 * 109.47067 * 209.99733 * 22 20 18 25 25 H 1.48500 * 109.46861 * 329.99738 * 22 20 18 26 26 C 1.47463 * 117.17385 * 42.91761 * 17 16 15 27 27 C 1.49970 * 117.69674 * 274.98165 * 14 13 12 28 28 C 1.53118 * 109.67418 * 50.76654 * 8 7 6 29 29 C 1.50706 * 128.67995 * 180.15287 * 5 4 3 30 30 H 1.08997 * 109.47242 * 269.96170 * 1 2 3 31 31 H 1.09005 * 109.47164 * 29.96807 * 1 2 3 32 32 H 1.09010 * 109.46868 * 149.96238 * 1 2 3 33 33 H 1.07998 * 126.09951 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.59899 * 42.94468 * 7 6 2 35 35 H 1.09004 * 109.72773 * 282.55747 * 7 6 2 36 36 H 0.97000 * 120.00645 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.47003 * 60.00258 * 13 12 10 38 38 H 1.09000 * 109.47625 * 300.00339 * 13 12 10 39 39 H 1.07995 * 118.17769 * 0.88265 * 15 14 13 40 40 H 1.08997 * 109.52035 * 108.92971 * 16 15 14 41 41 H 1.08996 * 109.51770 * 229.05338 * 16 15 14 42 42 H 0.97001 * 119.99771 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.74721 * 178.65167 * 26 17 16 44 44 H 1.09006 * 109.82605 * 57.88953 * 26 17 16 45 45 H 1.08998 * 109.31119 * 281.28977 * 27 14 13 46 46 H 1.09001 * 109.31388 * 40.71584 * 27 14 13 47 47 H 1.08995 * 109.49942 * 50.01843 * 28 8 7 48 48 H 1.09001 * 109.49487 * 170.11888 * 28 8 7 49 49 H 1.08998 * 109.74623 * 283.78548 * 29 5 4 50 50 H 1.08996 * 109.74951 * 44.51278 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6823 0.0006 5 6 3.5928 -0.6560 0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8923 -2.5003 -0.0032 8 6 3.0926 -3.3506 -0.4341 9 1 3.3040 -3.1714 -1.4883 10 6 2.7738 -4.8089 -0.2276 11 8 1.6957 -5.1364 0.2210 12 7 3.6868 -5.7493 -0.5416 13 6 3.3772 -7.1670 -0.3403 14 6 4.5555 -8.0040 -0.7668 15 6 5.4000 -8.3635 0.1462 16 6 6.6299 -9.1817 -0.1324 17 7 6.5615 -9.7065 -1.5039 18 6 6.9109 -10.9991 -1.7909 19 1 6.5097 -11.4849 -2.6680 20 6 7.7808 -11.6849 -0.9544 21 7 8.5033 -11.0260 -0.0734 22 14 7.9261 -13.5431 -1.0791 23 1 8.9870 -13.8921 -2.0578 24 1 8.2764 -14.1026 0.2512 25 1 6.6304 -14.1117 -1.5298 26 6 6.1000 -8.7825 -2.5563 27 6 4.6670 -8.3623 -2.2188 28 6 4.3182 -2.9736 0.4026 29 6 4.7919 -1.5688 0.0056 30 1 -0.3633 -0.0007 1.0276 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5145 33 1 4.4169 1.3397 0.0003 34 1 1.0703 -2.6460 -0.7042 35 1 1.5758 -2.7949 0.9974 36 1 4.5492 -5.4874 -0.9001 37 1 2.5056 -7.4368 -0.9367 38 1 3.1658 -7.3468 0.7138 39 1 5.2101 -8.0589 1.1648 40 1 7.5157 -8.5556 -0.0257 41 1 6.6830 -10.0111 0.5728 42 1 9.1109 -11.5054 0.5114 43 1 6.1186 -9.2862 -3.5228 44 1 6.7447 -7.9041 -2.5858 45 1 3.9882 -9.1859 -2.4400 46 1 4.3920 -7.4993 -2.8252 47 1 4.0538 -2.9830 1.4599 48 1 5.1178 -3.6918 0.2206 49 1 5.2359 -1.5980 -0.9895 50 1 5.5260 -1.2094 0.7266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001086395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:45 Heat of formation + Delta-G solvation = 34.144610 kcal Electronic energy + Delta-G solvation = -29690.750758 eV Core-core repulsion = 25718.414740 eV Total energy + Delta-G solvation = -3972.336018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.39461 -41.10795 -39.40119 -37.36282 -36.44736 -34.64905 -34.24864 -32.79131 -32.08956 -31.41253 -30.87604 -28.61588 -27.36767 -26.35230 -25.06987 -24.32461 -23.48073 -22.79818 -22.01478 -21.23512 -19.97493 -19.49167 -18.58271 -17.68143 -17.33692 -17.15984 -16.96024 -16.74101 -16.36717 -15.73137 -15.52071 -15.39749 -15.23343 -14.99999 -14.95326 -14.83343 -14.50903 -14.31857 -13.94903 -13.92498 -13.81522 -13.57077 -13.26523 -13.22325 -12.93459 -12.90249 -12.81962 -12.79012 -12.58272 -12.24521 -12.16082 -12.11128 -11.98188 -11.70536 -11.28010 -11.01315 -10.94808 -10.68411 -10.52478 -10.13480 -9.64617 -9.14416 -8.74471 -7.88949 -5.29415 1.05907 1.15565 1.46325 1.48395 1.49431 1.57143 1.70025 2.11985 2.38789 2.50837 3.21261 3.28567 3.51579 3.54522 3.60480 3.62911 3.78185 3.86869 3.97577 4.02242 4.17091 4.22895 4.29518 4.40528 4.44849 4.54158 4.55273 4.64309 4.66486 4.69897 4.75877 4.83444 4.84521 4.91857 4.93154 4.99614 5.03845 5.10321 5.11877 5.22639 5.32911 5.41361 5.44036 5.49819 5.61688 5.77472 5.82199 6.17492 6.23775 6.33913 6.47550 7.11119 7.12633 7.13875 7.84041 8.37094 9.19432 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027875 B = 0.001899 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.235942 B =14743.914528 C =15213.148915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.193 3.807 3 N -0.532 5.532 4 C -0.048 4.048 5 C -0.029 4.029 6 N -0.453 5.453 7 C 0.125 3.875 8 C -0.109 4.109 9 H 0.127 0.873 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.706 5.706 13 C 0.168 3.832 14 C -0.139 4.139 15 C -0.140 4.140 16 C 0.204 3.796 17 N -0.616 5.616 18 C -0.255 4.255 19 H 0.069 0.931 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.965 3.035 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.138 3.862 27 C -0.084 4.084 28 C -0.114 4.114 29 C -0.038 4.038 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.414 0.586 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.057 0.943 44 H 0.030 0.970 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.892 20.188 -1.017 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 N -0.253 5.253 4 C -0.194 4.194 5 C -0.143 4.143 6 N -0.137 5.137 7 C 0.003 3.997 8 C -0.130 4.130 9 H 0.145 0.855 10 C 0.312 3.688 11 O -0.459 6.459 12 N -0.357 5.357 13 C 0.044 3.956 14 C -0.140 4.140 15 C -0.161 4.161 16 C 0.078 3.922 17 N -0.340 5.340 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.794 3.206 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.012 3.988 27 C -0.123 4.123 28 C -0.152 4.152 29 C -0.076 4.076 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.199 0.801 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.902 20.522 -0.616 24.248 hybrid contribution 1.128 -1.833 0.163 2.158 sum -11.773 18.689 -0.453 22.093 Atomic orbital electron populations 1.20303 0.83022 1.04878 1.04361 1.23709 0.96929 0.81056 1.05166 1.70424 1.03128 1.29363 1.22347 1.22193 0.94862 0.93034 1.09332 1.21595 0.86372 0.95609 1.10763 1.45369 1.06532 1.07313 1.54449 1.21696 0.97599 0.76111 1.04320 1.21507 0.96790 0.90172 1.04562 0.85492 1.20490 0.83613 0.87929 0.76761 1.90720 1.25087 1.83430 1.46613 1.45985 1.18982 1.05686 1.65058 1.20239 0.95560 0.79186 1.00569 1.20587 0.96391 1.00904 0.96086 1.22945 0.96468 0.97633 0.99006 1.19410 0.91483 0.94661 0.86596 1.44430 1.77345 1.09126 1.03071 1.19479 1.20282 0.88881 1.09900 0.91310 1.25710 0.96665 1.02275 1.00273 1.70153 1.27353 1.35216 1.25766 0.85303 0.77892 0.80897 0.76533 1.21166 1.22033 1.19763 1.21172 0.93336 0.92582 0.91665 1.20688 0.97886 1.00882 0.92806 1.21694 0.96040 0.98080 0.99388 1.20328 0.92057 0.90506 1.04708 0.89356 0.88835 0.89344 0.80053 0.87748 0.89443 0.74878 0.91157 0.91884 0.86870 0.96682 0.92698 0.94145 0.92462 0.95184 0.92044 0.89149 0.91594 0.88052 0.87807 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.24 71.24 0.73 -0.14 16 2 C 0.19 3.92 7.94 138.25 1.10 5.02 16 3 N -0.53 -13.09 11.27 -188.77 -2.13 -15.22 16 4 C -0.05 -0.98 11.84 83.30 0.99 0.00 16 5 C -0.03 -0.50 6.57 40.73 0.27 -0.23 16 6 N -0.45 -8.10 3.13 -500.13 -1.57 -9.66 16 7 C 0.13 1.89 5.39 86.48 0.47 2.36 16 8 C -0.11 -1.40 2.52 -11.41 -0.03 -1.43 16 9 H 0.13 1.25 8.11 -2.39 -0.02 1.23 16 10 C 0.53 9.86 7.15 87.66 0.63 10.48 16 11 O -0.58 -15.32 15.83 -3.01 -0.05 -15.37 16 12 N -0.71 -12.63 5.37 -466.78 -2.51 -15.13 16 13 C 0.17 3.90 5.66 85.63 0.48 4.39 16 14 C -0.14 -3.95 5.22 -15.14 -0.08 -4.03 16 15 C -0.14 -4.75 9.47 27.11 0.26 -4.49 16 16 C 0.20 9.28 5.22 85.42 0.45 9.72 16 17 N -0.62 -29.34 3.01 -703.07 -2.12 -31.46 16 18 C -0.26 -13.61 9.71 84.03 0.82 -12.79 16 19 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 20 C -0.05 -2.97 5.01 84.86 0.43 -2.54 16 21 N -0.94 -53.89 11.08 21.65 0.24 -53.65 16 22 Si 0.97 44.04 29.58 68.60 2.03 46.07 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 C 0.14 5.09 6.58 86.23 0.57 5.66 16 27 C -0.08 -2.42 5.95 29.65 0.18 -2.25 16 28 C -0.11 -1.24 5.22 30.79 0.16 -1.08 16 29 C -0.04 -0.39 6.31 30.01 0.19 -0.20 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.09 0.84 7.59 -2.38 -0.02 0.82 16 33 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.10 1.42 7.72 -2.38 -0.02 1.40 16 35 H 0.09 1.50 7.81 -2.38 -0.02 1.48 16 36 H 0.41 5.80 7.79 -92.71 -0.72 5.08 16 37 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 38 H 0.06 1.58 7.78 -2.39 -0.02 1.56 16 39 H 0.11 3.38 7.73 -2.91 -0.02 3.36 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 2.89 6.41 -2.39 -0.02 2.88 16 42 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.06 2.09 7.97 -2.39 -0.02 2.07 16 44 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 48 H 0.10 0.84 7.30 -2.39 -0.02 0.83 16 49 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -71.77 398.43 1.71 -70.05 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.22 Total: 15.92 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 7.59 Total: 8.46 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -8.08 Total: -125.13 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.37 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -71.77 1.71 -70.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001086395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.198 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds