Wall clock time and date at job start Wed Apr 1 2020 02:57:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 N 1.30791 * 125.72390 * 2 1
4 4 C 1.34426 * 109.32083 * 179.90988 * 3 2 1
5 5 C 1.33852 * 107.79949 * 359.97438 * 4 3 2
6 6 N 1.34414 * 125.72569 * 179.97438 * 2 1 3
7 7 C 1.46467 * 128.44179 * 0.18889 * 6 2 1
8 8 C 1.53285 * 108.69414 * 162.68785 * 7 6 2
9 9 C 1.53109 * 109.70690 * 50.76218 * 8 7 6
10 10 H 1.09004 * 109.50095 * 50.07164 * 9 8 7
11 11 C 1.50703 * 109.50160 * 170.14133 * 9 8 7
12 12 O 1.21284 * 119.99359 * 359.93206 * 11 9 8
13 13 N 1.34777 * 120.00274 * 179.97438 * 11 9 8
14 14 C 1.46502 * 119.99695 * 179.97438 * 13 11 9
15 15 C 1.50701 * 109.46729 * 179.97438 * 14 13 11
16 16 C 1.29450 * 117.69259 * 95.00342 * 15 14 13
17 17 C 1.50320 * 123.65266 * 180.85797 * 16 15 14
18 18 N 1.47010 * 109.16690 * 349.02361 * 17 16 15
19 19 C 1.36934 * 121.37292 * 222.97391 * 18 17 16
20 20 H 1.08001 * 120.00041 * 155.95677 * 19 18 17
21 21 C 1.38809 * 120.00026 * 335.94652 * 19 18 17
22 22 N 1.31614 * 120.00451 * 344.53820 * 21 19 18
23 23 Si 1.86810 * 119.99961 * 164.53224 * 21 19 18
24 24 H 1.48497 * 109.46989 * 89.99924 * 23 21 19
25 25 H 1.48500 * 109.47114 * 210.00201 * 23 21 19
26 26 H 1.48500 * 109.46865 * 330.00452 * 23 21 19
27 27 C 1.47338 * 117.24725 * 42.94298 * 18 17 16
28 28 C 1.50092 * 117.67463 * 275.00946 * 15 14 13
29 29 C 1.50728 * 128.67089 * 180.17583 * 5 4 3
30 30 H 1.09006 * 109.47286 * 270.04438 * 1 2 3
31 31 H 1.09003 * 109.47204 * 30.04289 * 1 2 3
32 32 H 1.09001 * 109.47448 * 150.04405 * 1 2 3
33 33 H 1.07997 * 126.09932 * 180.02562 * 4 3 2
34 34 H 1.08998 * 109.60249 * 42.91877 * 7 6 2
35 35 H 1.09001 * 109.59802 * 282.44296 * 7 6 2
36 36 H 1.09001 * 109.42746 * 290.69168 * 8 7 6
37 37 H 1.08992 * 109.39437 * 170.81178 * 8 7 6
38 38 H 0.97003 * 119.99864 * 359.97438 * 13 11 9
39 39 H 1.08999 * 109.46969 * 60.00064 * 14 13 11
40 40 H 1.08995 * 109.47175 * 299.99782 * 14 13 11
41 41 H 1.08001 * 118.17331 * 0.83324 * 16 15 14
42 42 H 1.09005 * 109.52544 * 229.11757 * 17 16 15
43 43 H 1.08998 * 109.57476 * 108.95865 * 17 16 15
44 44 H 0.96998 * 120.00776 * 179.97438 * 22 21 19
45 45 H 1.09000 * 109.77630 * 57.81919 * 27 18 17
46 46 H 1.09002 * 109.77463 * 178.56739 * 27 18 17
47 47 H 1.09005 * 109.38144 * 40.73732 * 28 15 14
48 48 H 1.08998 * 109.31922 * 281.26800 * 28 15 14
49 49 H 1.09004 * 109.77475 * 44.56369 * 29 5 4
50 50 H 1.08994 * 109.72455 * 283.83980 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2706 1.0618 0.0000
4 6 3.5601 0.6822 0.0020
5 6 3.5928 -0.6559 0.0038
6 7 2.2918 -1.0912 0.0005
7 6 1.8922 -2.5003 -0.0027
8 6 3.0929 -3.3505 -0.4328
9 6 4.3184 -2.9742 0.4044
10 1 4.0538 -2.9846 1.4618
11 6 5.4238 -3.9671 0.1526
12 8 5.2491 -4.8862 -0.6192
13 7 6.6062 -3.8341 0.7858
14 6 7.6805 -4.7997 0.5414
15 6 8.8868 -4.4279 1.3646
16 6 9.0316 -5.0050 2.5143
17 6 10.1726 -4.7213 3.4509
18 7 11.1860 -3.9208 2.7485
19 6 12.5223 -4.1920 2.8754
20 1 13.2109 -3.8877 2.1011
21 6 12.9917 -4.8579 3.9992
22 7 12.2317 -4.9605 5.0688
23 14 14.7022 -5.6088 3.9935
24 1 15.6839 -4.6075 4.4823
25 1 14.7238 -6.7981 4.8824
26 1 15.0588 -6.0174 2.6110
27 6 10.7046 -2.8152 1.9020
28 6 9.8352 -3.4145 0.7934
29 6 4.7921 -1.5688 0.0101
30 1 -0.3634 0.0008 1.0277
31 1 -0.3634 0.8896 -0.5145
32 1 -0.3634 -0.8904 -0.5131
33 1 4.4170 1.3396 0.0029
34 1 1.0709 -2.6459 -0.7043
35 1 1.5769 -2.7932 0.9988
36 1 3.3049 -3.1715 -1.4869
37 1 2.8617 -4.4051 -0.2835
38 1 6.7457 -3.0991 1.4032
39 1 7.9452 -4.7888 -0.5159
40 1 7.3428 -5.7975 0.8211
41 1 8.2912 -5.7304 2.8176
42 1 10.6153 -5.6611 3.7810
43 1 9.8063 -4.1677 4.3155
44 1 12.5595 -5.4262 5.8540
45 1 10.1131 -2.1227 2.5009
46 1 11.5531 -2.2908 1.4625
47 1 9.2672 -2.6190 0.3110
48 1 10.4751 -3.8961 0.0540
49 1 5.5252 -1.2097 0.7325
50 1 5.2377 -1.5975 -0.9842
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001001146193.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:56
Heat of formation + Delta-G solvation = 52.713116 kcal
Electronic energy + Delta-G solvation = -29663.070976 eV
Core-core repulsion = 25691.540149 eV
Total energy + Delta-G solvation = -3971.530827 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-42.68944 -40.09994 -37.93055 -36.58473 -35.05123 -33.84113 -32.89787 -31.59700
-30.90735 -30.09192 -29.76609 -27.60621 -26.50607 -24.69774 -24.29568 -22.96962
-22.64751 -21.14384 -20.98050 -20.48131 -19.31346 -17.82945 -17.41767 -17.08302
-16.33918 -16.01964 -15.71829 -15.59052 -15.07394 -14.48999 -14.45392 -14.36713
-14.18446 -13.95961 -13.82764 -13.63363 -13.48702 -13.30632 -13.28944 -12.89426
-12.73183 -12.33789 -12.22060 -12.20459 -12.07676 -11.65540 -11.57713 -11.46141
-11.39721 -10.96132 -10.76643 -10.47803 -10.37389 -10.26970 -9.93193 -9.88005
-9.79737 -9.65332 -9.08972 -8.73525 -8.46052 -8.13104 -6.80144 -5.84931
-3.23711 1.73964 2.40613 2.46057 2.50052 2.87628 3.33469 3.34925
3.41879 3.44151 3.97595 4.14401 4.16263 4.21172 4.38784 4.45182
4.63165 4.68984 4.74527 4.90566 4.96891 5.10085 5.11814 5.15333
5.26785 5.28267 5.30726 5.34358 5.41224 5.47770 5.52431 5.63592
5.66921 5.74328 5.85926 6.00296 6.09733 6.09854 6.26944 6.34607
6.45374 6.50287 6.67338 6.80684 6.92316 7.09168 7.18625 7.25242
7.44682 7.67020 7.76409 7.84015 8.08542 8.32737 9.14234 9.76989
10.34605 11.25617
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.022900 B = 0.001951 C = 0.001876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.413623 B =14351.801539 C =14921.678230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C 0.204 3.796
3 N -0.493 5.493
4 C -0.018 4.018
5 C -0.023 4.023
6 N -0.453 5.453
7 C 0.103 3.897
8 C -0.113 4.113
9 C -0.112 4.112
10 H 0.102 0.898
11 C 0.517 3.483
12 O -0.544 6.544
13 N -0.717 5.717
14 C 0.157 3.843
15 C -0.167 4.167
16 C -0.123 4.123
17 C 0.193 3.807
18 N -0.595 5.595
19 C -0.246 4.246
20 H 0.069 0.931
21 C -0.001 4.001
22 N -0.910 5.910
23 Si 0.904 3.096
24 H -0.287 1.287
25 H -0.290 1.290
26 H -0.280 1.280
27 C 0.144 3.856
28 C -0.090 4.090
29 C -0.035 4.035
30 H 0.079 0.921
31 H 0.089 0.911
32 H 0.071 0.929
33 H 0.171 0.829
34 H 0.095 0.905
35 H 0.087 0.913
36 H 0.081 0.919
37 H 0.099 0.901
38 H 0.402 0.598
39 H 0.067 0.933
40 H 0.065 0.935
41 H 0.094 0.906
42 H 0.093 0.907
43 H 0.042 0.958
44 H 0.254 0.746
45 H 0.023 0.977
46 H 0.057 0.943
47 H 0.053 0.947
48 H 0.064 0.936
49 H 0.096 0.904
50 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.908 5.640 -9.420 25.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.057 4.057
3 N -0.213 5.213
4 C -0.165 4.165
5 C -0.137 4.137
6 N -0.137 5.137
7 C -0.019 4.019
8 C -0.151 4.151
9 C -0.133 4.133
10 H 0.120 0.880
11 C 0.302 3.698
12 O -0.421 6.421
13 N -0.367 5.367
14 C 0.034 3.966
15 C -0.168 4.168
16 C -0.144 4.144
17 C 0.068 3.932
18 N -0.318 5.318
19 C -0.376 4.376
20 H 0.086 0.914
21 C -0.199 4.199
22 N -0.555 5.555
23 Si 0.734 3.266
24 H -0.214 1.214
25 H -0.216 1.216
26 H -0.205 1.205
27 C 0.017 3.983
28 C -0.129 4.129
29 C -0.074 4.074
30 H 0.098 0.902
31 H 0.108 0.892
32 H 0.090 0.910
33 H 0.188 0.812
34 H 0.113 0.887
35 H 0.105 0.895
36 H 0.099 0.901
37 H 0.117 0.883
38 H 0.237 0.763
39 H 0.085 0.915
40 H 0.084 0.916
41 H 0.112 0.888
42 H 0.111 0.889
43 H 0.059 0.941
44 H 0.064 0.936
45 H 0.041 0.959
46 H 0.076 0.924
47 H 0.072 0.928
48 H 0.082 0.918
49 H 0.114 0.886
50 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -23.294 5.540 -9.826 25.881
hybrid contribution 1.251 -1.010 0.457 1.672
sum -22.043 4.530 -9.369 24.376
Atomic orbital electron populations
1.20160 0.84999 1.03876 1.03460 1.23123 0.95604 0.81279 1.05735
1.70465 1.01999 1.28061 1.20772 1.21853 0.94868 0.91888 1.07911
1.20953 0.85283 0.95299 1.12197 1.45297 1.06298 1.07235 1.54888
1.22045 0.98854 0.77674 1.03342 1.21679 0.91839 1.00720 1.00858
1.21428 0.94801 0.94628 1.02491 0.87993 1.20339 0.83236 0.85753
0.80440 1.90707 1.81452 1.33797 1.36191 1.46222 1.13225 1.31213
1.46062 1.20480 0.84957 0.91547 0.99578 1.20512 0.96769 1.02813
0.96728 1.23292 0.99269 0.96174 0.95619 1.19766 0.85588 0.97368
0.90457 1.44117 1.02477 1.31264 1.53944 1.19166 0.83219 1.33970
1.01207 0.91358 1.24990 0.97952 1.02220 0.94752 1.69997 1.37120
1.45646 1.02743 0.86259 0.84085 0.78808 0.77422 1.21399 1.21556
1.20521 1.20952 0.95757 0.90257 0.91332 1.20776 0.96632 0.96241
0.99233 1.20180 0.93441 0.90063 1.03671 0.90200 0.89205 0.91011
0.81179 0.88726 0.89496 0.90059 0.88282 0.76297 0.91516 0.91645
0.88827 0.88866 0.94057 0.93575 0.95915 0.92422 0.92837 0.91754
0.88615 0.89380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.38 10.24 36.00 0.37 -0.01 16
2 C 0.20 2.00 7.94 -155.75 -1.24 0.76 16
3 N -0.49 -6.07 11.27 -11.02 -0.12 -6.19 16
4 C -0.02 -0.19 11.84 -17.96 -0.21 -0.41 16
5 C -0.02 -0.23 6.57 -81.72 -0.54 -0.76 16
6 N -0.45 -3.99 3.13 -109.43 -0.34 -4.33 16
7 C 0.10 0.61 6.67 -3.91 -0.03 0.58 16
8 C -0.11 -0.83 4.66 -26.53 -0.12 -0.96 16
9 C -0.11 -0.91 2.54 -91.47 -0.23 -1.14 16
10 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16
11 C 0.52 5.87 7.13 -10.98 -0.08 5.79 16
12 O -0.54 -8.15 15.82 5.55 0.09 -8.06 16
13 N -0.72 -8.08 5.45 -61.47 -0.34 -8.42 16
14 C 0.16 2.15 5.66 -5.19 -0.03 2.12 16
15 C -0.17 -2.68 5.23 -100.93 -0.53 -3.20 16
16 C -0.12 -2.21 9.47 -35.78 -0.34 -2.55 16
17 C 0.19 4.39 5.23 -5.10 -0.03 4.37 16
18 N -0.59 -14.35 3.01 -173.67 -0.52 -14.88 16
19 C -0.25 -6.59 9.71 -15.06 -0.15 -6.73 16
20 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16
21 C 0.00 -0.04 5.01 -17.43 -0.09 -0.12 16
22 N -0.91 -25.66 11.08 55.49 0.61 -25.05 16
23 Si 0.90 21.36 29.58 -169.99 -5.03 16.33 16
24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16
25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
27 C 0.14 2.82 6.57 -3.53 -0.02 2.80 16
28 C -0.09 -1.46 5.96 -28.12 -0.17 -1.63 16
29 C -0.03 -0.28 5.45 -27.63 -0.15 -0.43 16
30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16
31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.07 0.27 7.59 -51.93 -0.39 -0.13 16
33 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16
34 H 0.09 0.39 7.72 -51.93 -0.40 -0.01 16
35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
36 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16
37 H 0.10 0.74 7.77 -51.93 -0.40 0.33 16
38 H 0.40 3.93 8.18 -40.82 -0.33 3.59 16
39 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16
40 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16
41 H 0.09 1.51 7.73 -52.49 -0.41 1.10 16
42 H 0.09 2.39 6.41 -51.93 -0.33 2.05 16
43 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16
44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16
45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
46 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16
47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
49 H 0.10 0.64 7.95 -51.93 -0.41 0.23 16
50 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16
LS Contribution 399.33 15.07 6.02 6.02
Total: -1.00 -33.20 399.33 -11.33 -44.53
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: -8.12 Total: 1.58 kcal
Atomic # 6 Polarization: 2.05 SS G_CDS: -3.58 Total: -1.52 kcal
Atomic # 7 Polarization: -58.15 SS G_CDS: -0.71 Total: -58.86 kcal
Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -33.20 -11.33 -44.53 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001001146193.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.243 kcal
(2) G-P(sol) polarization free energy of solvation -33.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds