Wall clock time and date at job start Wed Apr 1 2020 02:57:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 N 1.30791 * 125.72390 * 2 1
4 4 C 1.34426 * 109.32083 * 179.90988 * 3 2 1
5 5 C 1.33852 * 107.79949 * 359.97438 * 4 3 2
6 6 N 1.34414 * 125.72569 * 179.97438 * 2 1 3
7 7 C 1.46467 * 128.44179 * 0.18889 * 6 2 1
8 8 C 1.53285 * 108.69414 * 162.68785 * 7 6 2
9 9 C 1.53109 * 109.70690 * 50.76218 * 8 7 6
10 10 H 1.09004 * 109.50095 * 50.07164 * 9 8 7
11 11 C 1.50703 * 109.50160 * 170.14133 * 9 8 7
12 12 O 1.21284 * 119.99359 * 359.93206 * 11 9 8
13 13 N 1.34777 * 120.00274 * 179.97438 * 11 9 8
14 14 C 1.46502 * 119.99695 * 179.97438 * 13 11 9
15 15 C 1.50701 * 109.46729 * 179.97438 * 14 13 11
16 16 C 1.29450 * 117.69259 * 95.00342 * 15 14 13
17 17 C 1.50320 * 123.65266 * 180.85797 * 16 15 14
18 18 N 1.47010 * 109.16690 * 349.02361 * 17 16 15
19 19 C 1.36934 * 121.37292 * 222.97391 * 18 17 16
20 20 H 1.08001 * 120.00041 * 155.95677 * 19 18 17
21 21 C 1.38809 * 120.00026 * 335.94652 * 19 18 17
22 22 N 1.31614 * 120.00451 * 344.53820 * 21 19 18
23 23 Si 1.86810 * 119.99961 * 164.53224 * 21 19 18
24 24 H 1.48497 * 109.46989 * 89.99924 * 23 21 19
25 25 H 1.48500 * 109.47114 * 210.00201 * 23 21 19
26 26 H 1.48500 * 109.46865 * 330.00452 * 23 21 19
27 27 C 1.47338 * 117.24725 * 42.94298 * 18 17 16
28 28 C 1.50092 * 117.67463 * 275.00946 * 15 14 13
29 29 C 1.50728 * 128.67089 * 180.17583 * 5 4 3
30 30 H 1.09006 * 109.47286 * 270.04438 * 1 2 3
31 31 H 1.09003 * 109.47204 * 30.04289 * 1 2 3
32 32 H 1.09001 * 109.47448 * 150.04405 * 1 2 3
33 33 H 1.07997 * 126.09932 * 180.02562 * 4 3 2
34 34 H 1.08998 * 109.60249 * 42.91877 * 7 6 2
35 35 H 1.09001 * 109.59802 * 282.44296 * 7 6 2
36 36 H 1.09001 * 109.42746 * 290.69168 * 8 7 6
37 37 H 1.08992 * 109.39437 * 170.81178 * 8 7 6
38 38 H 0.97003 * 119.99864 * 359.97438 * 13 11 9
39 39 H 1.08999 * 109.46969 * 60.00064 * 14 13 11
40 40 H 1.08995 * 109.47175 * 299.99782 * 14 13 11
41 41 H 1.08001 * 118.17331 * 0.83324 * 16 15 14
42 42 H 1.09005 * 109.52544 * 229.11757 * 17 16 15
43 43 H 1.08998 * 109.57476 * 108.95865 * 17 16 15
44 44 H 0.96998 * 120.00776 * 179.97438 * 22 21 19
45 45 H 1.09000 * 109.77630 * 57.81919 * 27 18 17
46 46 H 1.09002 * 109.77463 * 178.56739 * 27 18 17
47 47 H 1.09005 * 109.38144 * 40.73732 * 28 15 14
48 48 H 1.08998 * 109.31922 * 281.26800 * 28 15 14
49 49 H 1.09004 * 109.77475 * 44.56369 * 29 5 4
50 50 H 1.08994 * 109.72455 * 283.83980 * 29 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2706 1.0618 0.0000
4 6 3.5601 0.6822 0.0020
5 6 3.5928 -0.6559 0.0038
6 7 2.2918 -1.0912 0.0005
7 6 1.8922 -2.5003 -0.0027
8 6 3.0929 -3.3505 -0.4328
9 6 4.3184 -2.9742 0.4044
10 1 4.0538 -2.9846 1.4618
11 6 5.4238 -3.9671 0.1526
12 8 5.2491 -4.8862 -0.6192
13 7 6.6062 -3.8341 0.7858
14 6 7.6805 -4.7997 0.5414
15 6 8.8868 -4.4279 1.3646
16 6 9.0316 -5.0050 2.5143
17 6 10.1726 -4.7213 3.4509
18 7 11.1860 -3.9208 2.7485
19 6 12.5223 -4.1920 2.8754
20 1 13.2109 -3.8877 2.1011
21 6 12.9917 -4.8579 3.9992
22 7 12.2317 -4.9605 5.0688
23 14 14.7022 -5.6088 3.9935
24 1 15.6839 -4.6075 4.4823
25 1 14.7238 -6.7981 4.8824
26 1 15.0588 -6.0174 2.6110
27 6 10.7046 -2.8152 1.9020
28 6 9.8352 -3.4145 0.7934
29 6 4.7921 -1.5688 0.0101
30 1 -0.3634 0.0008 1.0277
31 1 -0.3634 0.8896 -0.5145
32 1 -0.3634 -0.8904 -0.5131
33 1 4.4170 1.3396 0.0029
34 1 1.0709 -2.6459 -0.7043
35 1 1.5769 -2.7932 0.9988
36 1 3.3049 -3.1715 -1.4869
37 1 2.8617 -4.4051 -0.2835
38 1 6.7457 -3.0991 1.4032
39 1 7.9452 -4.7888 -0.5159
40 1 7.3428 -5.7975 0.8211
41 1 8.2912 -5.7304 2.8176
42 1 10.6153 -5.6611 3.7810
43 1 9.8063 -4.1677 4.3155
44 1 12.5595 -5.4262 5.8540
45 1 10.1131 -2.1227 2.5009
46 1 11.5531 -2.2908 1.4625
47 1 9.2672 -2.6190 0.3110
48 1 10.4751 -3.8961 0.0540
49 1 5.5252 -1.2097 0.7325
50 1 5.2377 -1.5975 -0.9842
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001001146193.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:57:55
Heat of formation + Delta-G solvation = 33.017187 kcal
Electronic energy + Delta-G solvation = -29663.925056 eV
Core-core repulsion = 25691.540149 eV
Total energy + Delta-G solvation = -3972.384907 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-43.35867 -41.04402 -39.39601 -37.34354 -36.38804 -34.72123 -34.23821 -32.66494
-32.10306 -31.41745 -30.67099 -28.79551 -27.53761 -25.89770 -25.23987 -24.40961
-23.65402 -22.71491 -21.63492 -21.36306 -19.95939 -19.49416 -18.47419 -17.74079
-17.31920 -17.13293 -17.01320 -16.70398 -16.42491 -15.76167 -15.53543 -15.24558
-15.04363 -15.01931 -14.95887 -14.84438 -14.54934 -14.28858 -13.96610 -13.91369
-13.75603 -13.51949 -13.26712 -13.14420 -12.91466 -12.85801 -12.79603 -12.77156
-12.58234 -12.24563 -12.19265 -12.10170 -12.04339 -11.70602 -11.28230 -11.09679
-10.81289 -10.68178 -10.45781 -10.10457 -9.64216 -9.15561 -8.74627 -7.88874
-5.29610 1.07189 1.18535 1.46359 1.48135 1.56379 1.57210 1.84074
2.13623 2.35823 2.50882 3.28527 3.34902 3.53694 3.57589 3.62725
3.63297 3.78120 3.87127 3.97860 4.03338 4.16445 4.25815 4.33829
4.44942 4.46667 4.54379 4.57752 4.65379 4.71006 4.72360 4.76115
4.77021 4.85045 4.87898 4.93174 4.95890 5.08207 5.09591 5.11742
5.22360 5.36294 5.42358 5.43031 5.49281 5.61509 5.77490 5.80857
6.17536 6.31443 6.33896 6.53074 7.13633 7.13934 7.18935 7.83979
8.37111 9.19617
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.022900 B = 0.001951 C = 0.001876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.413623 B =14351.801539 C =14921.678230
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C 0.198 3.802
3 N -0.537 5.537
4 C -0.045 4.045
5 C -0.026 4.026
6 N -0.454 5.454
7 C 0.103 3.897
8 C -0.110 4.110
9 C -0.102 4.102
10 H 0.118 0.882
11 C 0.521 3.479
12 O -0.579 6.579
13 N -0.710 5.710
14 C 0.167 3.833
15 C -0.138 4.138
16 C -0.142 4.142
17 C 0.204 3.796
18 N -0.615 5.615
19 C -0.256 4.256
20 H 0.070 0.930
21 C -0.055 4.055
22 N -0.939 5.939
23 Si 0.966 3.034
24 H -0.285 1.285
25 H -0.294 1.294
26 H -0.272 1.272
27 C 0.138 3.862
28 C -0.084 4.084
29 C -0.029 4.029
30 H 0.091 0.909
31 H 0.088 0.912
32 H 0.096 0.904
33 H 0.177 0.823
34 H 0.117 0.883
35 H 0.106 0.894
36 H 0.067 0.933
37 H 0.100 0.900
38 H 0.413 0.587
39 H 0.069 0.931
40 H 0.062 0.938
41 H 0.113 0.887
42 H 0.055 0.945
43 H 0.014 0.986
44 H 0.249 0.751
45 H 0.029 0.971
46 H 0.058 0.942
47 H 0.091 0.909
48 H 0.062 0.938
49 H 0.110 0.890
50 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.562 5.628 -10.719 27.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.064 4.064
3 N -0.257 5.257
4 C -0.191 4.191
5 C -0.140 4.140
6 N -0.138 5.138
7 C -0.018 4.018
8 C -0.148 4.148
9 C -0.123 4.123
10 H 0.136 0.864
11 C 0.309 3.691
12 O -0.459 6.459
13 N -0.361 5.361
14 C 0.044 3.956
15 C -0.139 4.139
16 C -0.163 4.163
17 C 0.079 3.921
18 N -0.339 5.339
19 C -0.386 4.386
20 H 0.087 0.913
21 C -0.250 4.250
22 N -0.586 5.586
23 Si 0.795 3.205
24 H -0.212 1.212
25 H -0.220 1.220
26 H -0.197 1.197
27 C 0.012 3.988
28 C -0.122 4.122
29 C -0.068 4.068
30 H 0.110 0.890
31 H 0.107 0.893
32 H 0.114 0.886
33 H 0.194 0.806
34 H 0.135 0.865
35 H 0.124 0.876
36 H 0.086 0.914
37 H 0.119 0.881
38 H 0.249 0.751
39 H 0.087 0.913
40 H 0.080 0.920
41 H 0.131 0.869
42 H 0.074 0.926
43 H 0.032 0.968
44 H 0.059 0.941
45 H 0.047 0.953
46 H 0.076 0.924
47 H 0.109 0.891
48 H 0.080 0.920
49 H 0.128 0.872
50 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -24.963 5.552 -11.140 27.894
hybrid contribution 1.732 -0.934 0.791 2.121
sum -23.231 4.618 -10.349 25.848
Atomic orbital electron populations
1.20319 0.82469 1.05030 1.04551 1.23807 0.97055 0.81043 1.04529
1.70427 1.02876 1.29843 1.22597 1.22124 0.95007 0.92927 1.09068
1.21121 0.86167 0.95103 1.11634 1.45495 1.05889 1.08163 1.54205
1.22262 0.98689 0.75707 1.05124 1.21636 0.92099 1.01097 0.99937
1.21394 0.93805 0.93561 1.03584 0.86410 1.20790 0.83411 0.85593
0.79354 1.90701 1.82010 1.35468 1.37736 1.46070 1.12758 1.30988
1.46287 1.20220 0.84472 0.91965 0.98926 1.20632 0.96876 1.00791
0.95599 1.22935 0.98599 0.98607 0.96131 1.19406 0.86599 0.95142
0.90967 1.44405 1.02046 1.32917 1.54573 1.19493 0.84687 1.33412
1.00979 0.91264 1.25724 1.01397 1.03198 0.94647 1.70154 1.38638
1.46635 1.03149 0.85289 0.80166 0.77660 0.77424 1.21156 1.21999
1.19723 1.21151 0.96460 0.89474 0.91669 1.20715 0.96438 0.97217
0.97874 1.20180 0.93110 0.89501 1.03966 0.89031 0.89339 0.88577
0.80597 0.86457 0.87602 0.91377 0.88143 0.75087 0.91294 0.92008
0.86944 0.92630 0.96814 0.94145 0.95322 0.92390 0.89080 0.92002
0.87218 0.89668
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.60 10.24 71.23 0.73 0.13 16
2 C 0.20 3.55 7.94 138.24 1.10 4.65 16
3 N -0.54 -12.95 11.27 -188.78 -2.13 -15.08 16
4 C -0.04 -0.95 11.84 83.30 0.99 0.03 16
5 C -0.03 -0.45 6.57 40.73 0.27 -0.18 16
6 N -0.45 -6.98 3.13 -500.12 -1.57 -8.55 16
7 C 0.10 0.89 6.67 86.48 0.58 1.47 16
8 C -0.11 -1.34 4.66 30.73 0.14 -1.20 16
9 C -0.10 -1.38 2.54 -11.35 -0.03 -1.41 16
10 H 0.12 1.30 8.12 -2.39 -0.02 1.28 16
11 C 0.52 10.51 7.13 87.66 0.63 11.13 16
12 O -0.58 -16.20 15.82 -3.04 -0.05 -16.25 16
13 N -0.71 -13.94 5.45 -466.78 -2.55 -16.48 16
14 C 0.17 4.15 5.66 85.63 0.48 4.64 16
15 C -0.14 -4.13 5.23 -15.10 -0.08 -4.21 16
16 C -0.14 -5.02 9.47 27.11 0.26 -4.76 16
17 C 0.20 9.54 5.23 85.42 0.45 9.99 16
18 N -0.62 -29.98 3.01 -703.38 -2.12 -32.10 16
19 C -0.26 -13.84 9.71 84.03 0.82 -13.02 16
20 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16
21 C -0.05 -3.03 5.01 84.86 0.43 -2.61 16
22 N -0.94 -54.70 11.08 21.65 0.24 -54.46 16
23 Si 0.97 44.58 29.58 68.60 2.03 46.61 16
24 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
27 C 0.14 5.26 6.57 86.25 0.57 5.83 16
28 C -0.08 -2.52 5.96 29.69 0.18 -2.34 16
29 C -0.03 -0.39 5.45 30.01 0.16 -0.23 16
30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16
31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
32 H 0.10 0.38 7.59 -2.39 -0.02 0.37 16
33 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16
34 H 0.12 0.52 7.72 -2.39 -0.02 0.50 16
35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16
36 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16
37 H 0.10 1.24 7.77 -2.39 -0.02 1.23 16
38 H 0.41 6.67 8.18 -92.71 -0.76 5.91 16
39 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16
40 H 0.06 1.63 7.78 -2.39 -0.02 1.62 16
41 H 0.11 3.52 7.73 -2.91 -0.02 3.49 16
42 H 0.06 2.98 6.41 -2.38 -0.02 2.97 16
43 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16
44 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16
45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16
46 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16
47 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16
48 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
49 H 0.11 1.17 7.95 -2.38 -0.02 1.15 16
50 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16
Total: -1.00 -74.12 399.33 1.70 -72.42
By element:
Atomic # 1 Polarization: 15.82 SS G_CDS: 0.18 Total: 16.00 kcal
Atomic # 6 Polarization: 0.25 SS G_CDS: 7.65 Total: 7.90 kcal
Atomic # 7 Polarization: -118.56 SS G_CDS: -8.12 Total: -126.68 kcal
Atomic # 8 Polarization: -16.20 SS G_CDS: -0.05 Total: -16.25 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal
Total: -74.12 1.70 -72.42 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001001146193.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.439 kcal
(2) G-P(sol) polarization free energy of solvation -74.123 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds