Wall clock time and date at job start Wed Apr 1 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31885 * 118.95138 * 2 1 4 4 C 1.32135 * 120.96348 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92590 * 0.02562 * 4 3 2 6 6 C 1.47829 * 120.94090 * 180.02562 * 5 4 3 7 7 O 1.21548 * 120.00009 * 173.89135 * 6 5 4 8 8 N 1.34780 * 119.99877 * 353.89513 * 6 5 4 9 9 C 1.46498 * 119.99912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47228 * 179.97438 * 9 8 6 11 11 C 1.29456 * 117.69374 * 94.99430 * 10 9 8 12 12 C 1.50320 * 123.65079 * 180.85842 * 11 10 9 13 13 N 1.47005 * 109.16643 * 349.02539 * 12 11 10 14 14 C 1.36939 * 121.37936 * 222.96801 * 13 12 11 15 15 H 1.07994 * 120.00469 * 158.24272 * 14 13 12 16 16 C 1.38811 * 119.99598 * 338.23886 * 14 13 12 17 17 N 1.31622 * 119.99928 * 343.62269 * 16 14 13 18 18 Si 1.86801 * 119.99928 * 163.61639 * 16 14 13 19 19 H 1.48503 * 109.46606 * 94.96434 * 18 16 14 20 20 H 1.48501 * 109.47264 * 214.96151 * 18 16 14 21 21 H 1.48492 * 109.47216 * 334.96281 * 18 16 14 22 22 C 1.47345 * 117.24875 * 42.94909 * 13 12 11 23 23 C 1.49970 * 117.69240 * 274.74008 * 10 9 8 24 24 C 1.39929 * 118.12049 * 359.97438 * 5 4 3 25 25 C 1.50693 * 120.53904 * 180.02562 * 24 5 4 26 26 C 1.53000 * 109.47717 * 206.86393 * 25 24 5 27 27 C 1.53007 * 109.47282 * 86.86434 * 25 24 5 28 28 N 1.31849 * 118.95113 * 180.25272 * 2 1 3 29 29 H 1.08992 * 109.47845 * 90.00040 * 1 2 3 30 30 H 1.09006 * 109.47003 * 210.00407 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99784 * 1 2 3 32 32 H 1.08000 * 120.53212 * 179.97438 * 4 3 2 33 33 H 0.96994 * 120.00058 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46983 * 299.99198 * 9 8 6 35 35 H 1.08994 * 109.47643 * 59.99327 * 9 8 6 36 36 H 1.07999 * 118.17473 * 0.88115 * 11 10 9 37 37 H 1.09003 * 109.52022 * 108.92583 * 12 11 10 38 38 H 1.08990 * 109.52734 * 229.11628 * 12 11 10 39 39 H 0.97007 * 119.99684 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.78049 * 57.80618 * 22 13 12 41 41 H 1.09000 * 109.77995 * 178.62366 * 22 13 12 42 42 H 1.08998 * 109.30767 * 281.28332 * 23 10 9 43 43 H 1.08993 * 109.31420 * 40.71177 * 23 10 9 44 44 H 1.09002 * 109.47286 * 326.86923 * 25 24 5 45 45 H 1.09003 * 109.47150 * 59.99964 * 26 25 24 46 46 H 1.08994 * 109.47230 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47175 * 300.00599 * 26 25 24 48 48 H 1.08994 * 109.47395 * 180.02562 * 27 25 24 49 49 H 1.09001 * 109.46558 * 300.00531 * 27 25 24 50 50 H 1.09002 * 109.46560 * 60.00045 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0016 7 8 6.2714 -1.0469 0.1136 8 7 6.3378 1.1605 -0.1215 9 6 7.8028 1.1603 -0.1209 10 6 8.3053 2.5731 -0.2715 11 6 8.5996 3.2252 0.8074 12 6 9.0933 4.6450 0.8141 13 7 9.4268 5.0465 -0.5602 14 6 10.5645 5.7556 -0.8397 15 1 10.9778 5.7422 -1.8373 16 6 11.1864 6.4917 0.1594 17 7 10.5366 6.7774 1.2678 18 14 12.9457 7.0766 -0.0691 19 1 12.9411 8.4640 -0.5988 20 1 13.6506 7.0481 1.2377 21 1 13.6439 6.1830 -1.0277 22 6 8.4866 4.6540 -1.6247 23 6 8.4348 3.1224 -1.6610 24 6 3.4660 -1.2003 0.0005 25 6 4.1855 -2.5243 0.0011 26 6 3.2987 -3.5871 -0.6508 27 6 4.4979 -2.9345 1.4417 28 7 2.1452 -1.1537 -0.0051 29 1 -0.3634 0.0000 -1.0275 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.9816 2.1494 0.0001 33 1 5.8529 1.9957 -0.2112 34 1 8.1657 0.7435 0.8186 35 1 8.1665 0.5553 -0.9513 36 1 8.4844 2.7210 1.7555 37 1 8.3147 5.2995 1.2059 38 1 9.9819 4.7188 1.4409 39 1 10.9714 7.2915 1.9661 40 1 7.4965 5.0553 -1.4087 41 1 8.8375 5.0325 -2.5847 42 1 9.3470 2.7379 -2.1170 43 1 7.5772 2.8064 -2.2549 44 1 5.1154 -2.4328 -0.5603 45 1 3.0762 -3.2950 -1.6771 46 1 3.8194 -4.5447 -0.6508 47 1 2.3688 -3.6786 -0.0895 48 1 5.0187 -3.8920 1.4421 49 1 5.1297 -2.1773 1.9061 50 1 3.5680 -3.0260 2.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001233246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:12 Heat of formation + Delta-G solvation = 44.233134 kcal Electronic energy + Delta-G solvation = -29847.657898 eV Core-core repulsion = 25875.759351 eV Total energy + Delta-G solvation = -3971.898547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.73986 -39.59171 -37.87296 -36.46006 -34.97875 -33.96036 -32.96480 -32.37509 -30.97049 -29.83273 -29.27792 -27.30750 -26.91673 -25.15002 -24.48601 -23.52816 -22.79393 -21.25712 -20.99751 -20.81628 -18.24112 -18.09112 -17.62004 -16.44931 -15.90257 -15.80173 -15.74141 -15.25723 -14.92005 -14.87148 -14.58250 -14.12219 -13.96954 -13.73034 -13.68916 -13.48781 -13.22508 -13.03054 -12.79586 -12.78533 -12.32761 -12.30594 -12.12327 -11.92198 -11.72105 -11.64135 -11.49404 -11.44635 -11.16754 -10.96743 -10.80850 -10.76630 -10.46636 -10.36101 -9.88000 -9.84480 -9.75023 -9.66338 -9.56181 -9.08392 -8.74849 -8.13429 -6.83580 -5.85057 -3.22010 0.13061 0.71131 2.44704 2.62322 3.29569 3.34718 3.42227 3.43784 3.44476 3.50718 3.65398 3.97875 4.43131 4.45138 4.56123 4.75439 4.90014 4.95493 5.02652 5.07326 5.15418 5.24636 5.27052 5.33492 5.43904 5.50224 5.51406 5.55175 5.67847 5.72853 5.75691 5.83735 5.86815 5.98012 5.99974 6.08187 6.10519 6.19224 6.25182 6.33839 6.44078 6.61189 6.65692 6.79414 7.08567 7.19142 7.23880 7.37349 7.66241 7.70511 7.76413 8.00757 8.31247 9.13766 9.76834 10.33161 11.25358 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002154 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.125607 B =12997.007562 C =13726.263813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.337 3.663 3 N -0.525 5.525 4 C 0.190 3.810 5 C -0.251 4.251 6 C 0.565 3.435 7 O -0.527 6.527 8 N -0.712 5.712 9 C 0.159 3.841 10 C -0.170 4.170 11 C -0.120 4.120 12 C 0.191 3.809 13 N -0.596 5.596 14 C -0.245 4.245 15 H 0.070 0.930 16 C -0.003 4.003 17 N -0.911 5.911 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.144 3.856 23 C -0.090 4.090 24 C 0.246 3.754 25 C -0.058 4.058 26 C -0.138 4.138 27 C -0.128 4.128 28 N -0.518 5.518 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.122 0.878 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.061 0.939 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.819 -16.565 -1.815 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 N -0.240 5.240 4 C 0.023 3.977 5 C -0.259 4.259 6 C 0.350 3.650 7 O -0.405 6.405 8 N -0.363 5.363 9 C 0.037 3.963 10 C -0.171 4.171 11 C -0.141 4.141 12 C 0.066 3.934 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.201 4.201 17 N -0.556 5.556 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.129 4.129 24 C 0.099 3.901 25 C -0.077 4.077 26 C -0.195 4.195 27 C -0.186 4.186 28 N -0.233 5.233 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.289 -17.195 -1.616 25.155 hybrid contribution 1.622 0.945 -0.019 1.877 sum -16.667 -16.251 -1.635 23.335 Atomic orbital electron populations 1.20638 0.85325 1.04477 1.04179 1.23548 0.98484 0.83378 0.87518 1.68307 1.09618 1.30125 1.15931 1.23515 0.89721 0.97722 0.86761 1.21629 0.96236 0.96341 1.11664 1.17752 0.85767 0.84283 0.77151 1.90718 1.69422 1.30616 1.49778 1.46126 1.08208 1.08633 1.73358 1.20516 0.77773 0.96019 1.02014 1.20487 1.06000 0.94276 0.96342 1.23322 0.95065 0.99218 0.96513 1.19822 0.99825 0.86146 0.87582 1.44157 1.22870 1.63037 1.01822 1.19199 0.99774 1.21647 0.96766 0.91231 1.24940 0.99185 0.98186 0.97756 1.70012 1.35461 1.41747 1.08394 0.86237 0.84747 0.78512 0.77075 1.21510 1.21544 1.20482 1.20988 0.93127 0.91135 0.93057 1.20789 1.00306 0.98953 0.92861 1.21988 0.88749 0.95183 0.84205 1.20570 0.99126 0.88396 0.99630 1.21744 0.99901 0.97527 1.00357 1.21632 1.01106 1.01991 0.93852 1.68211 1.09126 1.29838 1.16110 0.89220 0.89366 0.89273 0.81019 0.76518 0.91288 0.91233 0.88721 0.94101 0.88400 0.93587 0.95848 0.92436 0.91641 0.92954 0.86089 0.93088 0.92300 0.91638 0.91549 0.91986 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.31 36.00 0.37 -0.21 16 2 C 0.34 3.50 7.64 -157.07 -1.20 2.30 16 3 N -0.53 -5.82 10.32 -10.39 -0.11 -5.93 16 4 C 0.19 1.98 10.80 -16.77 -0.18 1.80 16 5 C -0.25 -2.89 5.91 -104.69 -0.62 -3.51 16 6 C 0.56 7.09 7.72 -12.34 -0.10 6.99 16 7 O -0.53 -7.67 12.30 5.32 0.07 -7.61 16 8 N -0.71 -8.40 5.50 -62.44 -0.34 -8.74 16 9 C 0.16 2.16 5.66 -5.19 -0.03 2.13 16 10 C -0.17 -2.70 5.22 -100.99 -0.53 -3.23 16 11 C -0.12 -2.15 9.47 -35.78 -0.34 -2.49 16 12 C 0.19 4.33 5.26 -5.10 -0.03 4.30 16 13 N -0.60 -14.32 3.01 -173.56 -0.52 -14.84 16 14 C -0.24 -6.52 9.73 -15.06 -0.15 -6.67 16 15 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 16 C 0.00 -0.09 5.01 -17.43 -0.09 -0.17 16 17 N -0.91 -25.62 10.97 55.49 0.61 -25.01 16 18 Si 0.90 21.33 29.58 -169.99 -5.03 16.30 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.14 2.81 6.59 -3.43 -0.02 2.79 16 23 C -0.09 -1.47 5.95 -28.08 -0.17 -1.63 16 24 C 0.25 2.86 5.84 -81.82 -0.48 2.38 16 25 C -0.06 -0.63 2.39 -91.77 -0.22 -0.85 16 26 C -0.14 -1.25 8.72 37.16 0.32 -0.92 16 27 C -0.13 -1.30 8.85 37.16 0.33 -0.97 16 28 N -0.52 -5.81 9.21 -6.68 -0.06 -5.87 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.17 1.36 6.58 -52.49 -0.35 1.01 16 33 H 0.40 4.08 6.64 -40.82 -0.27 3.81 16 34 H 0.07 0.97 7.78 -51.93 -0.40 0.56 16 35 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.09 1.51 7.73 -52.49 -0.41 1.11 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 2.50 6.26 -51.93 -0.33 2.18 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.12 1.47 5.72 -51.93 -0.30 1.17 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.60 7.80 -51.93 -0.41 0.19 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.73 7.20 -51.93 -0.37 0.35 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -30.50 400.82 -10.32 -40.83 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.86 Total: 2.79 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.11 Total: 2.04 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.43 Total: -60.40 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.07 Total: -7.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.50 -10.32 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001233246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.060 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds