Wall clock time and date at job start Wed Apr 1 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31885 * 118.95138 * 2 1 4 4 C 1.32135 * 120.96348 * 179.97438 * 3 2 1 5 5 C 1.39967 * 118.92590 * 0.02562 * 4 3 2 6 6 C 1.47829 * 120.94090 * 180.02562 * 5 4 3 7 7 O 1.21548 * 120.00009 * 173.89135 * 6 5 4 8 8 N 1.34780 * 119.99877 * 353.89513 * 6 5 4 9 9 C 1.46498 * 119.99912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47228 * 179.97438 * 9 8 6 11 11 C 1.29456 * 117.69374 * 94.99430 * 10 9 8 12 12 C 1.50320 * 123.65079 * 180.85842 * 11 10 9 13 13 N 1.47005 * 109.16643 * 349.02539 * 12 11 10 14 14 C 1.36939 * 121.37936 * 222.96801 * 13 12 11 15 15 H 1.07994 * 120.00469 * 158.24272 * 14 13 12 16 16 C 1.38811 * 119.99598 * 338.23886 * 14 13 12 17 17 N 1.31622 * 119.99928 * 343.62269 * 16 14 13 18 18 Si 1.86801 * 119.99928 * 163.61639 * 16 14 13 19 19 H 1.48503 * 109.46606 * 94.96434 * 18 16 14 20 20 H 1.48501 * 109.47264 * 214.96151 * 18 16 14 21 21 H 1.48492 * 109.47216 * 334.96281 * 18 16 14 22 22 C 1.47345 * 117.24875 * 42.94909 * 13 12 11 23 23 C 1.49970 * 117.69240 * 274.74008 * 10 9 8 24 24 C 1.39929 * 118.12049 * 359.97438 * 5 4 3 25 25 C 1.50693 * 120.53904 * 180.02562 * 24 5 4 26 26 C 1.53000 * 109.47717 * 206.86393 * 25 24 5 27 27 C 1.53007 * 109.47282 * 86.86434 * 25 24 5 28 28 N 1.31849 * 118.95113 * 180.25272 * 2 1 3 29 29 H 1.08992 * 109.47845 * 90.00040 * 1 2 3 30 30 H 1.09006 * 109.47003 * 210.00407 * 1 2 3 31 31 H 1.09002 * 109.47109 * 329.99784 * 1 2 3 32 32 H 1.08000 * 120.53212 * 179.97438 * 4 3 2 33 33 H 0.96994 * 120.00058 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.46983 * 299.99198 * 9 8 6 35 35 H 1.08994 * 109.47643 * 59.99327 * 9 8 6 36 36 H 1.07999 * 118.17473 * 0.88115 * 11 10 9 37 37 H 1.09003 * 109.52022 * 108.92583 * 12 11 10 38 38 H 1.08990 * 109.52734 * 229.11628 * 12 11 10 39 39 H 0.97007 * 119.99684 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.78049 * 57.80618 * 22 13 12 41 41 H 1.09000 * 109.77995 * 178.62366 * 22 13 12 42 42 H 1.08998 * 109.30767 * 281.28332 * 23 10 9 43 43 H 1.08993 * 109.31420 * 40.71177 * 23 10 9 44 44 H 1.09002 * 109.47286 * 326.86923 * 25 24 5 45 45 H 1.09003 * 109.47150 * 59.99964 * 26 25 24 46 46 H 1.08994 * 109.47230 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47175 * 300.00599 * 26 25 24 48 48 H 1.08994 * 109.47395 * 180.02562 * 27 25 24 49 49 H 1.09001 * 109.46558 * 300.00531 * 27 25 24 50 50 H 1.09002 * 109.46560 * 60.00045 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0005 6 6 5.6638 -0.0002 0.0016 7 8 6.2714 -1.0469 0.1136 8 7 6.3378 1.1605 -0.1215 9 6 7.8028 1.1603 -0.1209 10 6 8.3053 2.5731 -0.2715 11 6 8.5996 3.2252 0.8074 12 6 9.0933 4.6450 0.8141 13 7 9.4268 5.0465 -0.5602 14 6 10.5645 5.7556 -0.8397 15 1 10.9778 5.7422 -1.8373 16 6 11.1864 6.4917 0.1594 17 7 10.5366 6.7774 1.2678 18 14 12.9457 7.0766 -0.0691 19 1 12.9411 8.4640 -0.5988 20 1 13.6506 7.0481 1.2377 21 1 13.6439 6.1830 -1.0277 22 6 8.4866 4.6540 -1.6247 23 6 8.4348 3.1224 -1.6610 24 6 3.4660 -1.2003 0.0005 25 6 4.1855 -2.5243 0.0011 26 6 3.2987 -3.5871 -0.6508 27 6 4.4979 -2.9345 1.4417 28 7 2.1452 -1.1537 -0.0051 29 1 -0.3634 0.0000 -1.0275 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.9816 2.1494 0.0001 33 1 5.8529 1.9957 -0.2112 34 1 8.1657 0.7435 0.8186 35 1 8.1665 0.5553 -0.9513 36 1 8.4844 2.7210 1.7555 37 1 8.3147 5.2995 1.2059 38 1 9.9819 4.7188 1.4409 39 1 10.9714 7.2915 1.9661 40 1 7.4965 5.0553 -1.4087 41 1 8.8375 5.0325 -2.5847 42 1 9.3470 2.7379 -2.1170 43 1 7.5772 2.8064 -2.2549 44 1 5.1154 -2.4328 -0.5603 45 1 3.0762 -3.2950 -1.6771 46 1 3.8194 -4.5447 -0.6508 47 1 2.3688 -3.6786 -0.0895 48 1 5.0187 -3.8920 1.4421 49 1 5.1297 -2.1773 1.9061 50 1 3.5680 -3.0260 2.0030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001233246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:11 Heat of formation + Delta-G solvation = 26.913058 kcal Electronic energy + Delta-G solvation = -29848.408953 eV Core-core repulsion = 25875.759351 eV Total energy + Delta-G solvation = -3972.649602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.56581 -40.60779 -39.33072 -37.34892 -36.27899 -34.92246 -34.32682 -33.27062 -32.53357 -31.41087 -30.12030 -28.45520 -27.98827 -26.19743 -25.74045 -24.60775 -24.25244 -22.84772 -21.92110 -21.68243 -19.56716 -19.08011 -18.91899 -17.43281 -17.19663 -17.02247 -16.74334 -16.68294 -16.02174 -15.92193 -15.62069 -15.46094 -15.25435 -15.11619 -14.85290 -14.55699 -14.31036 -14.06910 -13.87388 -13.61483 -13.40318 -13.27639 -13.25893 -13.02742 -12.93213 -12.80332 -12.76778 -12.57862 -12.46402 -12.25608 -12.23089 -12.10078 -12.03197 -11.69604 -11.62494 -11.26303 -10.79593 -10.67723 -10.60930 -10.37991 -10.08380 -9.64801 -8.77262 -7.88366 -5.27090 -0.69508 -0.10686 1.15057 1.46470 1.48681 1.57903 1.69660 2.23203 2.51381 2.60837 2.78090 2.89133 3.19804 3.28757 3.57520 3.61999 3.72359 3.87246 3.98033 4.05247 4.11483 4.18756 4.30470 4.45079 4.54699 4.59283 4.65639 4.69618 4.75343 4.76554 4.80811 4.84214 4.90649 4.92603 4.93961 4.99937 5.09909 5.13639 5.20634 5.23678 5.32297 5.36308 5.42050 5.46547 5.50235 5.61436 5.77202 5.80453 6.17346 6.33405 6.39838 6.90518 7.05024 7.13766 7.84544 8.36481 9.20074 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002154 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.125607 B =12997.007562 C =13726.263813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.329 3.671 3 N -0.539 5.539 4 C 0.194 3.806 5 C -0.263 4.263 6 C 0.569 3.431 7 O -0.548 6.548 8 N -0.705 5.705 9 C 0.170 3.830 10 C -0.141 4.141 11 C -0.139 4.139 12 C 0.202 3.798 13 N -0.616 5.616 14 C -0.253 4.253 15 H 0.071 0.929 16 C -0.056 4.056 17 N -0.940 5.940 18 Si 0.966 3.034 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.271 1.271 22 C 0.138 3.862 23 C -0.084 4.084 24 C 0.236 3.764 25 C -0.059 4.059 26 C -0.130 4.130 27 C -0.122 4.122 28 N -0.526 5.526 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.195 0.805 33 H 0.409 0.591 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.043 0.957 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.077 -18.017 -2.936 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 N -0.253 5.253 4 C 0.026 3.974 5 C -0.271 4.271 6 C 0.356 3.644 7 O -0.428 6.428 8 N -0.356 5.356 9 C 0.048 3.952 10 C -0.142 4.142 11 C -0.159 4.159 12 C 0.077 3.923 13 N -0.340 5.340 14 C -0.383 4.383 15 H 0.089 0.911 16 C -0.251 4.251 17 N -0.587 5.587 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.196 1.196 22 C 0.012 3.988 23 C -0.123 4.123 24 C 0.089 3.911 25 C -0.077 4.077 26 C -0.188 4.188 27 C -0.180 4.180 28 N -0.241 5.241 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.211 0.789 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.062 0.938 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.579 -18.657 -2.764 27.186 hybrid contribution 1.912 1.379 0.254 2.371 sum -17.667 -17.278 -2.510 24.839 Atomic orbital electron populations 1.20782 0.82869 1.05428 1.05326 1.24282 1.00034 0.83037 0.86230 1.68409 1.09851 1.30452 1.16617 1.23875 0.89727 0.98219 0.85545 1.21536 0.95504 0.96888 1.13149 1.17834 0.86150 0.83912 0.76524 1.90716 1.69932 1.31401 1.50746 1.45916 1.07393 1.09043 1.73291 1.20288 0.78729 0.93931 1.02293 1.20598 1.03161 0.94909 0.95507 1.22966 0.97529 0.97089 0.98355 1.19461 0.97584 0.88767 0.86532 1.44441 1.23271 1.63077 1.03206 1.19526 1.00808 1.21231 0.96781 0.91112 1.25667 1.02546 0.99076 0.97802 1.70171 1.36651 1.42800 1.09067 0.85276 0.80619 0.77982 0.76702 1.21390 1.22013 1.19604 1.21190 0.92365 0.93447 0.91764 1.20725 1.01817 0.96215 0.93530 1.22201 0.89208 0.95611 0.84043 1.20547 0.98747 0.88728 0.99725 1.21683 0.99658 0.97581 0.99858 1.21575 1.00989 1.01926 0.93483 1.68288 1.08857 1.30247 1.16707 0.87774 0.88330 0.88377 0.78872 0.75400 0.91381 0.90666 0.86844 0.96841 0.92147 0.94168 0.95225 0.92374 0.91796 0.89373 0.87524 0.93437 0.90971 0.91664 0.90398 0.93797 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.31 71.23 0.73 -0.21 16 2 C 0.33 6.28 7.64 138.71 1.06 7.33 16 3 N -0.54 -10.95 10.32 -186.80 -1.93 -12.88 16 4 C 0.19 3.66 10.80 85.07 0.92 4.58 16 5 C -0.26 -5.68 5.91 -19.91 -0.12 -5.79 16 6 C 0.57 13.36 7.72 86.78 0.67 14.03 16 7 O -0.55 -15.32 12.30 -3.87 -0.05 -15.36 16 8 N -0.71 -14.92 5.50 -469.73 -2.59 -17.51 16 9 C 0.17 4.19 5.66 85.63 0.48 4.67 16 10 C -0.14 -4.19 5.22 -15.14 -0.08 -4.27 16 11 C -0.14 -4.87 9.47 27.10 0.26 -4.62 16 12 C 0.20 9.40 5.26 85.42 0.45 9.85 16 13 N -0.62 -29.87 3.01 -703.03 -2.12 -31.99 16 14 C -0.25 -13.66 9.73 84.03 0.82 -12.84 16 15 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 16 C -0.06 -3.11 5.01 84.86 0.42 -2.69 16 17 N -0.94 -54.64 10.97 21.65 0.24 -54.40 16 18 Si 0.97 44.52 29.58 68.60 2.03 46.55 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.14 5.23 6.59 86.32 0.57 5.80 16 23 C -0.08 -2.53 5.95 29.72 0.18 -2.35 16 24 C 0.24 5.23 5.84 42.92 0.25 5.48 16 25 C -0.06 -1.20 2.39 -11.54 -0.03 -1.23 16 26 C -0.13 -2.17 8.72 71.98 0.63 -1.54 16 27 C -0.12 -2.37 8.85 71.98 0.64 -1.73 16 28 N -0.53 -11.03 9.21 -175.04 -1.61 -12.64 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.19 2.58 6.58 -2.91 -0.02 2.56 16 33 H 0.41 7.20 6.64 -92.71 -0.62 6.59 16 34 H 0.07 1.75 7.78 -2.38 -0.02 1.74 16 35 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 36 H 0.11 3.53 7.73 -2.91 -0.02 3.51 16 37 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 3.24 6.26 -2.39 -0.01 3.22 16 39 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 2.17 7.96 -2.39 -0.02 2.15 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.11 2.52 5.72 -2.39 -0.01 2.51 16 45 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.06 1.09 7.80 -2.39 -0.02 1.07 16 48 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.04 1.01 7.20 -2.39 -0.02 0.99 16 50 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -66.91 400.82 2.16 -64.75 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.33 Total: 19.02 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 7.85 Total: 14.47 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -8.01 Total: -129.42 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.36 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.91 2.16 -64.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001233246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.659 kcal (2) G-P(sol) polarization free energy of solvation -66.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds