Wall clock time and date at job start Wed Apr 1 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46572 * 2 1 4 4 N 1.31920 * 120.17260 * 263.31098 * 3 2 1 5 5 N 1.28278 * 122.32201 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.52255 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.01903 * 180.02562 * 6 5 4 8 8 C 1.38508 * 119.96404 * 359.71962 * 6 5 4 9 9 C 1.39728 * 120.16895 * 83.29724 * 3 2 1 10 10 C 1.48136 * 121.14701 * 0.02562 * 9 3 2 11 11 O 1.21506 * 120.00135 * 4.93848 * 10 9 3 12 12 N 1.34783 * 119.99787 * 184.93607 * 10 9 3 13 13 C 1.46498 * 119.99769 * 180.02562 * 12 10 9 14 14 H 1.09002 * 115.56469 * 350.68231 * 13 12 10 15 15 C 1.53029 * 117.50376 * 136.39033 * 13 12 10 16 16 C 1.52848 * 59.98831 * 107.49126 * 15 13 12 17 17 C 1.53175 * 117.66114 * 252.27045 * 16 15 13 18 18 C 1.53352 * 108.77182 * 269.97794 * 17 16 15 19 19 N 1.46845 * 108.81132 * 308.69253 * 18 17 16 20 20 C 1.36938 * 120.38264 * 236.91536 * 19 18 17 21 21 H 1.08005 * 119.99794 * 32.27059 * 20 19 18 22 22 C 1.38809 * 120.00104 * 212.26909 * 20 19 18 23 23 N 1.31616 * 119.99953 * 10.29478 * 22 20 19 24 24 Si 1.86805 * 119.99768 * 190.29905 * 22 20 19 25 25 H 1.48496 * 109.47007 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47150 * 119.99983 * 24 22 20 27 27 H 1.48499 * 109.46884 * 239.99864 * 24 22 20 28 28 C 1.46853 * 119.23477 * 56.90228 * 19 18 17 29 29 C 1.53186 * 117.64984 * 107.69598 * 16 15 13 30 30 H 1.08998 * 109.46886 * 60.00089 * 1 2 3 31 31 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46950 * 299.99811 * 1 2 3 33 33 H 1.08998 * 109.46950 * 240.00189 * 2 1 3 34 34 H 1.08998 * 109.46886 * 119.99911 * 2 1 3 35 35 H 1.09005 * 109.47154 * 90.00108 * 7 6 5 36 36 H 1.08998 * 109.47553 * 209.99712 * 7 6 5 37 37 H 1.09001 * 109.47408 * 330.00581 * 7 6 5 38 38 H 1.08002 * 121.08474 * 180.28860 * 8 6 5 39 39 H 0.97001 * 120.00054 * 359.97438 * 12 10 9 40 40 H 1.08999 * 117.50276 * 0.02562 * 15 13 12 41 41 H 1.09004 * 117.50720 * 214.98203 * 15 13 12 42 42 H 1.09001 * 109.58499 * 29.76401 * 17 16 15 43 43 H 1.09003 * 109.58796 * 150.19239 * 17 16 15 44 44 H 1.08999 * 109.58016 * 188.89610 * 18 17 16 45 45 H 1.08999 * 109.57888 * 68.49184 * 18 17 16 46 46 H 0.96998 * 119.99843 * 180.02562 * 23 22 20 47 47 H 1.08996 * 109.57519 * 183.29370 * 28 19 18 48 48 H 1.09002 * 109.69162 * 62.95390 * 28 19 18 49 49 H 1.09004 * 109.58506 * 209.80316 * 29 16 15 50 50 H 1.08997 * 109.59149 * 330.23297 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3785 2.0018 -1.1327 5 7 2.8105 3.2087 -1.1805 6 6 2.9414 3.9583 -0.1031 7 6 3.4542 5.3701 -0.2246 8 6 2.6012 3.4493 1.1394 9 6 2.1333 2.1299 1.1998 10 6 1.7539 1.5099 2.4905 11 8 1.4323 0.3389 2.5307 12 7 1.7656 2.2448 3.6203 13 6 1.3909 1.6315 4.8969 14 1 0.9658 0.6300 4.8307 15 6 2.2580 1.9520 6.1164 16 6 0.8582 2.5535 5.9943 17 6 0.7517 4.0488 5.6796 18 6 0.7216 4.8299 6.9990 19 7 -0.3120 4.2524 7.8676 20 6 -1.3271 5.0344 8.3505 21 1 -1.7016 5.8581 7.7607 22 6 -1.8747 4.7687 9.5980 23 7 -1.2932 3.9031 10.4011 24 14 -3.4370 5.6395 10.1369 25 1 -3.8889 6.5570 9.0603 26 1 -4.4957 4.6342 10.4079 27 1 -3.1680 6.4200 11.3713 28 6 -0.2447 2.8264 8.2121 29 6 -0.2343 2.0049 6.9173 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.6152 6.0499 -0.3731 36 1 3.9861 5.6432 0.6867 37 1 4.1321 5.4384 -1.0754 38 1 2.6968 4.0486 2.0327 39 1 2.0227 3.1795 3.5883 40 1 3.1070 2.6195 5.9689 41 1 2.4037 1.1612 6.8524 42 1 1.6140 4.3604 5.0901 43 1 -0.1642 4.2403 5.1206 44 1 0.4883 5.8757 6.7991 45 1 1.6927 4.7573 7.4887 46 1 -1.6761 3.7171 11.2727 47 1 -1.1139 2.5540 8.8107 48 1 0.6654 2.6279 8.7781 49 1 -1.2035 2.0863 6.4250 50 1 -0.0265 0.9603 7.1490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016695602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:27 Heat of formation + Delta-G solvation = 62.445364 kcal Electronic energy + Delta-G solvation = -30285.933973 eV Core-core repulsion = 26314.825168 eV Total energy + Delta-G solvation = -3971.108805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.75978 -40.00980 -38.57650 -35.84874 -35.20044 -34.21966 -33.28397 -31.91984 -31.37414 -30.06862 -28.46689 -28.25177 -25.75987 -24.76705 -24.42220 -22.60371 -22.56130 -21.88070 -21.06403 -20.59889 -18.41790 -18.09278 -17.88001 -16.53269 -16.35964 -16.10640 -15.79998 -15.19243 -14.89145 -14.82288 -14.37952 -14.20338 -14.09061 -13.71990 -13.57150 -13.51154 -13.42707 -13.19161 -12.83599 -12.76300 -12.58499 -12.35074 -12.02253 -11.78667 -11.71799 -11.45494 -11.30320 -11.10467 -11.00788 -10.82576 -10.61346 -10.58554 -10.48663 -10.40389 -10.05415 -9.87953 -9.81545 -9.75297 -9.63243 -9.44925 -8.64812 -8.52545 -6.65365 -5.83686 -3.33741 -0.05828 0.46105 2.41676 2.66088 3.20040 3.32390 3.40421 3.41963 3.53224 3.83934 3.95701 4.04788 4.18251 4.33624 4.43368 4.64721 4.82464 4.83782 4.99123 4.99760 5.00909 5.10771 5.19080 5.21353 5.28744 5.36093 5.37828 5.53167 5.54961 5.58007 5.68448 5.78231 5.82318 5.89617 5.96358 5.96843 6.07134 6.15224 6.19835 6.33162 6.37993 6.53436 6.55688 6.62075 6.74436 6.87852 7.16097 7.32588 7.66420 7.73586 7.83692 8.31562 8.43845 9.17408 9.78472 10.35917 11.23304 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002425 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.376784 B =11544.809724 C =12200.159887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 C 0.122 3.878 4 N -0.239 5.239 5 N -0.225 5.225 6 C 0.059 3.941 7 C -0.101 4.101 8 C -0.083 4.083 9 C -0.125 4.125 10 C 0.564 3.436 11 O -0.514 6.514 12 N -0.684 5.684 13 C 0.065 3.935 14 H 0.136 0.864 15 C -0.180 4.180 16 C -0.093 4.093 17 C -0.099 4.099 18 C 0.150 3.850 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.063 0.937 22 C 0.005 3.995 23 N -0.903 5.903 24 Si 0.904 3.096 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.173 3.827 29 C -0.106 4.106 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.400 0.600 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.254 0.746 47 H 0.094 0.906 48 H 0.018 0.982 49 H 0.060 0.940 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.591 -2.496 -18.004 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.023 4.023 4 N -0.081 5.081 5 N -0.068 5.068 6 C -0.085 4.085 7 C -0.160 4.160 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.349 3.651 11 O -0.391 6.391 12 N -0.333 5.333 13 C -0.039 4.039 14 H 0.154 0.846 15 C -0.218 4.218 16 C -0.095 4.095 17 C -0.138 4.138 18 C 0.023 3.977 19 N -0.312 5.312 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.194 4.194 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.216 1.216 28 C 0.047 3.953 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.171 0.829 39 H 0.236 0.764 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.112 0.888 48 H 0.036 0.964 49 H 0.079 0.921 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.461 -3.494 -19.444 21.904 hybrid contribution -0.667 1.140 1.929 2.338 sum 8.794 -2.354 -17.515 19.739 Atomic orbital electron populations 1.21589 0.93403 1.02602 1.01677 1.20837 0.97231 0.88713 1.05374 1.23164 0.92016 0.98669 0.88438 1.73079 1.07962 1.03215 1.23805 1.72835 1.07617 0.99456 1.26922 1.22873 0.96710 0.99010 0.89957 1.20717 1.02123 0.88816 1.04309 1.22559 0.94562 0.94304 0.99845 1.21116 1.01858 0.95121 0.95879 1.17806 0.78178 0.86262 0.82848 1.90714 1.47232 1.15399 1.85737 1.45311 1.67439 1.13962 1.06611 1.22026 1.04486 0.99193 0.78245 0.84592 1.23550 0.94981 1.03863 0.99410 1.22008 0.95343 0.94594 0.97530 1.21655 0.99825 0.92446 0.99884 1.20839 0.92282 0.95302 0.89263 1.43941 1.26282 1.04868 1.56074 1.19218 1.09823 1.11658 0.97694 0.91883 1.25181 0.99609 0.99204 0.95398 1.69960 1.39284 1.36792 1.08727 0.86203 0.83027 0.79085 0.78338 1.20243 1.21528 1.21618 1.20805 1.01423 0.82244 0.90856 1.21914 0.95942 0.98384 0.98347 0.93097 0.91451 0.92327 0.90130 0.86461 0.89490 0.89942 0.89661 0.82896 0.76419 0.89004 0.88046 0.93877 0.91702 0.92704 0.96276 0.93585 0.88803 0.96360 0.92098 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.58 37.16 0.36 -1.05 16 2 C -0.08 -0.89 5.49 -27.88 -0.15 -1.05 16 3 C 0.12 1.44 6.16 -82.00 -0.51 0.94 16 4 N -0.24 -3.07 11.42 33.81 0.39 -2.69 16 5 N -0.23 -2.70 11.41 33.57 0.38 -2.31 16 6 C 0.06 0.54 6.86 -82.46 -0.57 -0.03 16 7 C -0.10 -0.56 10.19 36.00 0.37 -0.19 16 8 C -0.08 -0.71 9.35 -38.78 -0.36 -1.07 16 9 C -0.13 -1.36 5.92 -104.57 -0.62 -1.98 16 10 C 0.56 6.76 7.64 -12.19 -0.09 6.67 16 11 O -0.51 -7.26 11.95 5.36 0.06 -7.20 16 12 N -0.68 -7.55 5.31 -54.69 -0.29 -7.84 16 13 C 0.07 0.85 6.14 -67.96 -0.42 0.43 16 14 H 0.14 1.90 7.40 -51.93 -0.38 1.52 16 15 C -0.18 -2.34 9.86 -26.79 -0.26 -2.60 16 16 C -0.09 -1.40 1.94 -154.45 -0.30 -1.70 16 17 C -0.10 -1.49 5.38 -26.46 -0.14 -1.64 16 18 C 0.15 2.88 6.52 -3.67 -0.02 2.86 16 19 N -0.59 -13.97 2.93 -172.25 -0.50 -14.47 16 20 C -0.25 -6.70 9.55 -15.06 -0.14 -6.84 16 21 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 22 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 23 N -0.90 -25.37 11.01 55.49 0.61 -24.76 16 24 Si 0.90 21.10 29.57 -169.99 -5.03 16.07 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 28 C 0.17 3.90 5.35 -3.67 -0.02 3.88 16 29 C -0.11 -1.90 5.83 -26.45 -0.15 -2.06 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 7.20 -51.93 -0.37 0.32 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.12 1.36 5.65 -51.93 -0.29 1.07 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.15 0.82 6.64 -52.49 -0.35 0.48 16 39 H 0.40 3.56 5.34 -40.82 -0.22 3.34 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.51 6.75 -51.93 -0.35 0.15 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.04 7.92 -51.93 -0.41 0.62 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.09 2.42 5.94 -51.93 -0.31 2.11 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 396.45 15.07 5.97 5.97 Total: -1.00 -30.90 396.45 -9.26 -40.15 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.73 Total: 2.47 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.13 Total: -5.39 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.59 Total: -52.08 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.06 Total: -7.20 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.90 -9.26 -40.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016695602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.600 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds