Wall clock time and date at job start Wed Apr 1 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46572 * 2 1 4 4 N 1.31920 * 120.17260 * 263.31098 * 3 2 1 5 5 N 1.28278 * 122.32201 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.52255 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.01903 * 180.02562 * 6 5 4 8 8 C 1.38508 * 119.96404 * 359.71962 * 6 5 4 9 9 C 1.39728 * 120.16895 * 83.29724 * 3 2 1 10 10 C 1.48136 * 121.14701 * 0.02562 * 9 3 2 11 11 O 1.21506 * 120.00135 * 4.93848 * 10 9 3 12 12 N 1.34783 * 119.99787 * 184.93607 * 10 9 3 13 13 C 1.46498 * 119.99769 * 180.02562 * 12 10 9 14 14 H 1.09002 * 115.56469 * 350.68231 * 13 12 10 15 15 C 1.53029 * 117.50376 * 136.39033 * 13 12 10 16 16 C 1.52848 * 59.98831 * 107.49126 * 15 13 12 17 17 C 1.53175 * 117.66114 * 252.27045 * 16 15 13 18 18 C 1.53352 * 108.77182 * 269.97794 * 17 16 15 19 19 N 1.46845 * 108.81132 * 308.69253 * 18 17 16 20 20 C 1.36938 * 120.38264 * 236.91536 * 19 18 17 21 21 H 1.08005 * 119.99794 * 32.27059 * 20 19 18 22 22 C 1.38809 * 120.00104 * 212.26909 * 20 19 18 23 23 N 1.31616 * 119.99953 * 10.29478 * 22 20 19 24 24 Si 1.86805 * 119.99768 * 190.29905 * 22 20 19 25 25 H 1.48496 * 109.47007 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47150 * 119.99983 * 24 22 20 27 27 H 1.48499 * 109.46884 * 239.99864 * 24 22 20 28 28 C 1.46853 * 119.23477 * 56.90228 * 19 18 17 29 29 C 1.53186 * 117.64984 * 107.69598 * 16 15 13 30 30 H 1.08998 * 109.46886 * 60.00089 * 1 2 3 31 31 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46950 * 299.99811 * 1 2 3 33 33 H 1.08998 * 109.46950 * 240.00189 * 2 1 3 34 34 H 1.08998 * 109.46886 * 119.99911 * 2 1 3 35 35 H 1.09005 * 109.47154 * 90.00108 * 7 6 5 36 36 H 1.08998 * 109.47553 * 209.99712 * 7 6 5 37 37 H 1.09001 * 109.47408 * 330.00581 * 7 6 5 38 38 H 1.08002 * 121.08474 * 180.28860 * 8 6 5 39 39 H 0.97001 * 120.00054 * 359.97438 * 12 10 9 40 40 H 1.08999 * 117.50276 * 0.02562 * 15 13 12 41 41 H 1.09004 * 117.50720 * 214.98203 * 15 13 12 42 42 H 1.09001 * 109.58499 * 29.76401 * 17 16 15 43 43 H 1.09003 * 109.58796 * 150.19239 * 17 16 15 44 44 H 1.08999 * 109.58016 * 188.89610 * 18 17 16 45 45 H 1.08999 * 109.57888 * 68.49184 * 18 17 16 46 46 H 0.96998 * 119.99843 * 180.02562 * 23 22 20 47 47 H 1.08996 * 109.57519 * 183.29370 * 28 19 18 48 48 H 1.09002 * 109.69162 * 62.95390 * 28 19 18 49 49 H 1.09004 * 109.58506 * 209.80316 * 29 16 15 50 50 H 1.08997 * 109.59149 * 330.23297 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3785 2.0018 -1.1327 5 7 2.8105 3.2087 -1.1805 6 6 2.9414 3.9583 -0.1031 7 6 3.4542 5.3701 -0.2246 8 6 2.6012 3.4493 1.1394 9 6 2.1333 2.1299 1.1998 10 6 1.7539 1.5099 2.4905 11 8 1.4323 0.3389 2.5307 12 7 1.7656 2.2448 3.6203 13 6 1.3909 1.6315 4.8969 14 1 0.9658 0.6300 4.8307 15 6 2.2580 1.9520 6.1164 16 6 0.8582 2.5535 5.9943 17 6 0.7517 4.0488 5.6796 18 6 0.7216 4.8299 6.9990 19 7 -0.3120 4.2524 7.8676 20 6 -1.3271 5.0344 8.3505 21 1 -1.7016 5.8581 7.7607 22 6 -1.8747 4.7687 9.5980 23 7 -1.2932 3.9031 10.4011 24 14 -3.4370 5.6395 10.1369 25 1 -3.8889 6.5570 9.0603 26 1 -4.4957 4.6342 10.4079 27 1 -3.1680 6.4200 11.3713 28 6 -0.2447 2.8264 8.2121 29 6 -0.2343 2.0049 6.9173 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.6152 6.0499 -0.3731 36 1 3.9861 5.6432 0.6867 37 1 4.1321 5.4384 -1.0754 38 1 2.6968 4.0486 2.0327 39 1 2.0227 3.1795 3.5883 40 1 3.1070 2.6195 5.9689 41 1 2.4037 1.1612 6.8524 42 1 1.6140 4.3604 5.0901 43 1 -0.1642 4.2403 5.1206 44 1 0.4883 5.8757 6.7991 45 1 1.6927 4.7573 7.4887 46 1 -1.6761 3.7171 11.2727 47 1 -1.1139 2.5540 8.8107 48 1 0.6654 2.6279 8.7781 49 1 -1.2035 2.0863 6.4250 50 1 -0.0265 0.9603 7.1490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016695602.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:26 Heat of formation + Delta-G solvation = 44.173619 kcal Electronic energy + Delta-G solvation = -30286.726295 eV Core-core repulsion = 26314.825168 eV Total energy + Delta-G solvation = -3971.901128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56058 -41.02529 -39.74735 -37.23999 -36.12449 -35.11879 -34.35352 -33.42132 -32.36293 -31.58956 -29.94125 -28.98529 -26.56032 -26.23115 -25.52885 -24.04591 -23.50722 -22.92038 -22.37654 -21.68117 -19.83183 -18.93591 -18.89359 -18.14901 -17.22728 -17.07176 -16.78498 -16.58917 -16.05459 -15.77779 -15.64446 -15.29040 -15.13408 -15.01696 -14.83810 -14.70543 -14.39744 -14.12263 -14.07037 -13.77264 -13.29486 -13.27974 -13.21149 -13.07747 -12.86929 -12.80604 -12.62492 -12.57640 -12.25668 -12.17013 -11.99729 -11.87419 -11.79773 -11.41904 -11.39793 -11.39146 -11.23179 -10.77816 -10.62545 -10.50433 -10.45870 -9.73862 -8.55376 -7.83928 -5.36540 -0.84027 -0.26826 1.45835 1.48209 1.53141 1.57594 1.73619 2.39874 2.51249 2.81314 2.94531 3.10371 3.22551 3.31881 3.47009 3.62695 3.65645 3.80979 3.87493 3.96763 3.98757 4.14182 4.19548 4.23078 4.37511 4.49435 4.54802 4.59761 4.66976 4.75569 4.77394 4.84690 4.87710 4.89336 4.95852 4.96254 5.03367 5.05626 5.10504 5.17112 5.23973 5.25365 5.31098 5.33677 5.41522 5.45374 5.58933 5.67136 5.83360 6.29297 6.45493 6.95809 7.19455 7.53544 7.90753 8.41485 9.19979 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.002425 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.376784 B =11544.809724 C =12200.159887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C 0.110 3.890 4 N -0.267 5.267 5 N -0.254 5.254 6 C 0.060 3.940 7 C -0.101 4.101 8 C -0.067 4.067 9 C -0.138 4.138 10 C 0.567 3.433 11 O -0.539 6.539 12 N -0.673 5.673 13 C 0.087 3.913 14 H 0.127 0.873 15 C -0.166 4.166 16 C -0.114 4.114 17 C -0.085 4.085 18 C 0.145 3.855 19 N -0.609 5.609 20 C -0.259 4.259 21 H 0.064 0.936 22 C -0.049 4.049 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.180 3.820 29 C -0.095 4.095 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.192 0.808 39 H 0.413 0.587 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.249 0.751 47 H 0.054 0.946 48 H -0.001 1.001 49 H 0.046 0.954 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 -1.048 -19.380 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 C -0.036 4.036 4 N -0.107 5.107 5 N -0.097 5.097 6 C -0.085 4.085 7 C -0.159 4.159 8 C -0.096 4.096 9 C -0.152 4.152 10 C 0.353 3.647 11 O -0.417 6.417 12 N -0.324 5.324 13 C -0.019 4.019 14 H 0.144 0.856 15 C -0.205 4.205 16 C -0.116 4.116 17 C -0.124 4.124 18 C 0.019 3.981 19 N -0.333 5.333 20 C -0.390 4.390 21 H 0.082 0.918 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.793 3.207 25 H -0.191 1.191 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.055 3.945 29 C -0.134 4.134 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.209 0.791 39 H 0.252 0.748 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.017 0.983 49 H 0.065 0.935 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.801 -2.021 -20.873 23.589 hybrid contribution -1.025 0.737 2.335 2.655 sum 9.776 -1.283 -18.538 20.997 Atomic orbital electron populations 1.21534 0.93306 1.03051 1.00798 1.20789 0.97266 0.88660 1.05174 1.23270 0.92439 0.99046 0.88846 1.73023 1.09144 1.04043 1.24478 1.72757 1.08646 0.99580 1.28670 1.23471 0.95464 1.00112 0.89439 1.20889 1.02685 0.86520 1.05793 1.22979 0.92250 0.93345 1.01059 1.21043 1.03047 0.96251 0.94823 1.17932 0.77565 0.85955 0.83236 1.90715 1.48258 1.16628 1.86100 1.45136 1.67122 1.14533 1.05597 1.21725 1.03431 0.97975 0.78763 0.85560 1.23641 0.94209 1.03612 0.98989 1.21836 0.95879 0.94933 0.98924 1.21482 1.01499 0.91685 0.97712 1.21016 0.90782 0.95908 0.90376 1.44205 1.27106 1.05207 1.56749 1.19527 1.10456 1.11457 0.97567 0.91829 1.25884 1.02492 1.00343 0.95760 1.70122 1.40688 1.38429 1.08849 0.85251 0.79653 0.77984 0.77842 1.19054 1.21946 1.21910 1.20537 0.98563 0.82888 0.92552 1.21641 0.96801 0.98454 0.96510 0.93065 0.90385 0.93914 0.89495 0.87368 0.88296 0.87171 0.89706 0.79078 0.74845 0.86866 0.88044 0.89322 0.92518 0.92687 0.96306 0.94182 0.92772 0.98282 0.93498 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.58 71.98 0.69 -1.96 16 2 C -0.08 -1.71 5.49 29.85 0.16 -1.54 16 3 C 0.11 2.50 6.16 42.91 0.26 2.77 16 4 N -0.27 -6.69 11.42 -46.95 -0.54 -7.23 16 5 N -0.25 -5.76 11.41 -47.70 -0.54 -6.31 16 6 C 0.06 0.92 6.86 42.61 0.29 1.22 16 7 C -0.10 -0.72 10.19 71.23 0.73 0.00 16 8 C -0.07 -0.89 9.35 22.79 0.21 -0.68 16 9 C -0.14 -2.69 5.92 -19.83 -0.12 -2.80 16 10 C 0.57 12.27 7.64 86.87 0.66 12.93 16 11 O -0.54 -14.57 11.95 -3.73 -0.04 -14.62 16 12 N -0.67 -12.39 5.31 -445.23 -2.36 -14.75 16 13 C 0.09 2.00 6.14 44.97 0.28 2.27 16 14 H 0.13 3.27 7.40 -2.39 -0.02 3.25 16 15 C -0.17 -3.77 9.86 30.55 0.30 -3.47 16 16 C -0.11 -3.17 1.94 -52.14 -0.10 -3.27 16 17 C -0.08 -2.29 5.38 30.77 0.17 -2.13 16 18 C 0.14 5.32 6.52 86.43 0.56 5.88 16 19 N -0.61 -29.00 2.93 -698.87 -2.05 -31.04 16 20 C -0.26 -13.79 9.55 84.03 0.80 -12.99 16 21 H 0.06 3.30 7.85 -2.91 -0.02 3.28 16 22 C -0.05 -2.70 5.05 84.86 0.43 -2.27 16 23 N -0.93 -54.17 11.01 21.65 0.24 -53.93 16 24 Si 0.96 44.02 29.57 68.60 2.03 46.04 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 C 0.18 8.34 5.35 86.43 0.46 8.80 16 29 C -0.09 -3.36 5.83 30.77 0.18 -3.18 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.00 7.20 -2.39 -0.02 0.98 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 2.51 5.65 -2.39 -0.01 2.49 16 35 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.11 0.21 8.09 -2.39 -0.02 0.19 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.19 0.94 6.64 -2.91 -0.02 0.92 16 39 H 0.41 5.21 5.34 -92.71 -0.49 4.71 16 40 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.09 1.60 6.75 -2.39 -0.02 1.58 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.98 7.92 -2.39 -0.02 1.96 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 47 H 0.05 2.92 5.94 -2.39 -0.01 2.90 16 48 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 50 H 0.07 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -70.38 396.45 3.17 -67.21 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.46 Total: 15.05 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 5.97 Total: -0.42 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -5.25 Total: -113.26 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.04 Total: -14.62 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.38 3.17 -67.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016695602.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.386 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds