Wall clock time and date at job start Wed Apr 1 2020 03:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46801 * 2 1 4 4 C 1.50703 * 109.47505 * 119.99794 * 2 1 3 5 5 N 1.32158 * 120.53848 * 267.40143 * 4 2 1 6 6 C 1.31858 * 120.96660 * 179.76078 * 5 4 2 7 7 N 1.31885 * 122.09305 * 0.53043 * 6 5 4 8 8 C 1.32130 * 120.96762 * 359.73572 * 7 6 5 9 9 C 1.39931 * 120.53306 * 87.68252 * 4 2 1 10 10 C 1.47827 * 120.94381 * 359.97438 * 9 4 2 11 11 O 1.21560 * 120.00014 * 353.94780 * 10 9 4 12 12 N 1.34779 * 120.00436 * 173.93987 * 10 9 4 13 13 C 1.46498 * 120.00274 * 179.97438 * 12 10 9 14 14 H 1.09001 * 115.54898 * 9.32142 * 13 12 10 15 15 C 1.53026 * 117.50409 * 223.59147 * 13 12 10 16 16 C 1.52817 * 117.49901 * 155.00325 * 13 12 10 17 17 C 1.53185 * 117.71666 * 359.86291 * 16 13 12 18 18 C 1.53350 * 108.76963 * 158.88737 * 17 16 13 19 19 N 1.46839 * 108.81592 * 51.30971 * 18 17 16 20 20 C 1.36934 * 120.38636 * 123.11607 * 19 18 17 21 21 H 1.08004 * 119.99763 * 333.53170 * 20 19 18 22 22 C 1.38807 * 120.00396 * 153.52485 * 20 19 18 23 23 N 1.31621 * 120.00082 * 339.24466 * 22 20 19 24 24 Si 1.86800 * 120.00195 * 159.24012 * 22 20 19 25 25 H 1.48498 * 109.47238 * 90.00170 * 24 22 20 26 26 H 1.48502 * 109.46975 * 210.00288 * 24 22 20 27 27 H 1.48502 * 109.47097 * 329.99960 * 24 22 20 28 28 C 1.46849 * 119.23326 * 303.09468 * 19 18 17 29 29 C 1.53186 * 117.71260 * 215.10009 * 16 13 12 30 30 H 1.08992 * 109.47387 * 60.00394 * 1 2 3 31 31 H 1.09004 * 109.47196 * 299.99565 * 1 2 3 32 32 H 1.09006 * 109.46740 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47615 * 240.00119 * 2 1 3 34 34 H 1.08991 * 109.47145 * 60.00429 * 3 2 1 35 35 H 1.09009 * 109.47083 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47153 * 299.99576 * 3 2 1 37 37 H 1.08001 * 118.95354 * 180.27333 * 6 5 4 38 38 H 1.08001 * 120.53724 * 179.97438 * 8 7 6 39 39 H 0.97005 * 119.99340 * 0.02562 * 12 10 9 40 40 H 1.08997 * 117.50474 * 359.97438 * 15 13 12 41 41 H 1.08997 * 117.50593 * 145.05131 * 15 13 12 42 42 H 1.08994 * 109.58680 * 278.67627 * 17 16 13 43 43 H 1.09001 * 109.58216 * 39.10224 * 17 16 13 44 44 H 1.08999 * 109.58080 * 291.50491 * 18 17 16 45 45 H 1.09002 * 109.57501 * 171.10917 * 18 17 16 46 46 H 0.96996 * 120.00600 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.58068 * 297.11380 * 28 19 18 48 48 H 1.09003 * 109.69497 * 176.76772 * 28 19 18 49 49 H 1.09007 * 109.58480 * 320.90277 * 29 16 13 50 50 H 1.08994 * 109.58860 * 81.33165 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.3049 -0.0335 2.3324 6 6 2.7405 -0.6470 3.4152 7 7 2.9345 -1.9510 3.4516 8 6 2.6923 -2.7042 2.3934 9 6 2.2235 -2.0965 1.2229 10 6 1.9381 -2.8966 0.0130 11 8 1.4283 -2.3706 -0.9572 12 7 2.2431 -4.2091 -0.0145 13 6 1.9598 -5.0020 -1.2133 14 1 1.6514 -4.4337 -2.0908 15 6 1.3405 -6.3872 -1.0144 16 6 2.8013 -6.2564 -1.4449 17 6 3.8803 -6.5914 -0.4104 18 6 4.2222 -8.0823 -0.5191 19 7 4.5173 -8.3994 -1.9221 20 6 5.7193 -8.9567 -2.2683 21 1 6.5907 -8.7858 -1.6535 22 6 5.8179 -9.7412 -3.4091 23 7 4.7385 -10.2884 -3.9268 24 14 7.4823 -10.0204 -4.2098 25 1 8.1164 -11.2292 -3.6250 26 1 7.3024 -10.2137 -5.6712 27 1 8.3512 -8.8403 -3.9699 28 6 3.5083 -8.1125 -2.9498 29 6 3.1521 -6.6221 -2.8905 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 2.9489 -0.0626 4.2992 38 1 2.8540 -3.7714 2.4308 39 1 2.6496 -4.6288 0.7598 40 1 1.1444 -6.7087 0.0085 41 1 0.6246 -6.7305 -1.7611 42 1 4.7723 -5.9966 -0.6070 43 1 3.5070 -6.3741 0.5904 44 1 3.3739 -8.6773 -0.1807 45 1 5.0943 -8.3029 0.0965 46 1 4.8073 -10.8369 -4.7238 47 1 2.6157 -8.7092 -2.7620 48 1 3.9083 -8.3535 -3.9347 49 1 2.2955 -6.4252 -3.5353 50 1 4.0048 -6.0291 -3.2208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016973127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:54 Heat of formation + Delta-G solvation = 56.642484 kcal Electronic energy + Delta-G solvation = -30326.076924 eV Core-core repulsion = 26354.716487 eV Total energy + Delta-G solvation = -3971.360437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.75976 -39.89607 -38.49392 -36.43513 -35.48294 -33.77584 -33.10519 -31.97827 -31.38413 -30.04283 -28.34411 -27.36274 -25.66480 -25.17753 -24.39181 -22.57847 -22.36543 -21.26959 -21.10654 -20.51076 -18.37930 -18.21329 -17.89210 -17.11404 -16.46161 -16.04589 -15.73091 -15.03265 -14.84282 -14.72863 -14.60085 -14.25925 -14.12858 -13.90058 -13.57015 -13.46129 -13.25386 -13.12375 -12.77504 -12.34576 -12.31235 -12.01663 -11.78073 -11.72942 -11.68386 -11.50720 -11.43667 -11.25236 -11.03784 -10.89218 -10.72678 -10.50415 -10.38330 -10.03173 -9.97587 -9.85969 -9.74274 -9.67881 -9.64853 -9.43592 -8.58571 -8.46667 -6.71533 -5.82744 -3.22141 0.05943 0.62049 2.53179 2.78740 3.35418 3.39528 3.43348 3.45963 3.59249 3.64207 3.89594 4.09304 4.29994 4.46024 4.47695 4.79293 4.86111 4.88118 4.93688 5.04059 5.05293 5.08549 5.34725 5.39384 5.41514 5.50120 5.57907 5.65492 5.69602 5.73881 5.81470 5.91437 5.95846 6.00033 6.00278 6.08270 6.17796 6.22475 6.36064 6.43174 6.51395 6.55473 6.57984 6.63493 6.76535 6.90214 7.24209 7.32070 7.60669 7.62749 7.76828 7.93026 8.41339 9.17792 9.82450 10.37520 11.25247 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002323 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.918197 B =12048.753593 C =12414.491867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.139 4.139 4 C 0.244 3.756 5 N -0.518 5.518 6 C 0.316 3.684 7 N -0.526 5.526 8 C 0.185 3.815 9 C -0.242 4.242 10 C 0.569 3.431 11 O -0.522 6.522 12 N -0.687 5.687 13 C 0.068 3.932 14 H 0.136 0.864 15 C -0.180 4.180 16 C -0.095 4.095 17 C -0.098 4.098 18 C 0.150 3.850 19 N -0.589 5.589 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.899 5.899 24 Si 0.898 3.102 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.171 3.829 29 C -0.105 4.105 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.201 0.799 38 H 0.170 0.830 39 H 0.399 0.601 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.018 0.982 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 18.956 11.524 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C -0.196 4.196 4 C 0.097 3.903 5 N -0.232 5.232 6 C 0.029 3.971 7 N -0.240 5.240 8 C 0.018 3.982 9 C -0.250 4.250 10 C 0.355 3.645 11 O -0.399 6.399 12 N -0.336 5.336 13 C -0.037 4.037 14 H 0.153 0.847 15 C -0.219 4.219 16 C -0.097 4.097 17 C -0.138 4.138 18 C 0.023 3.977 19 N -0.311 5.311 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.544 5.544 24 Si 0.728 3.272 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.045 3.955 29 C -0.145 4.145 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.218 0.782 38 H 0.187 0.813 39 H 0.235 0.765 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.110 0.890 49 H 0.071 0.929 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.329 19.759 11.514 24.338 hybrid contribution 0.877 -1.059 -0.519 1.469 sum -7.452 18.700 10.995 22.937 Atomic orbital electron populations 1.21630 0.92655 1.02478 1.01810 1.20612 0.97200 0.96258 0.93908 1.21751 1.00813 0.94796 1.02244 1.22018 0.85598 0.88902 0.93792 1.68382 1.14140 1.40762 0.99912 1.25268 0.87893 0.88212 0.95754 1.68454 1.17964 1.07708 1.29842 1.23480 0.87258 1.00609 0.86830 1.21642 1.09096 0.96810 0.97446 1.17686 0.78590 0.81751 0.86452 1.90719 1.43193 1.70095 1.35940 1.45300 1.62254 1.08491 1.17574 1.21969 1.05852 0.86668 0.89210 0.84662 1.23547 0.97252 0.98475 1.02614 1.21989 0.91795 0.97219 0.98648 1.21646 0.96833 1.00721 0.94575 1.20824 0.97938 0.91004 0.87921 1.43997 1.15996 1.71080 1.00052 1.19170 0.86286 1.24014 1.08888 0.91716 1.24963 0.96865 0.96895 1.00922 1.70057 1.27507 1.33405 1.23413 0.86365 0.84045 0.78013 0.78790 1.21425 1.21524 1.20503 1.20790 0.91118 0.88124 0.95446 1.21881 0.99917 1.01686 0.90977 0.91480 0.93102 0.92066 0.85941 0.91609 0.93015 0.92223 0.78213 0.81263 0.76515 0.88985 0.88125 0.91659 0.93758 0.96271 0.92687 0.93607 0.96370 0.88981 0.92919 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.86 37.16 0.33 -0.90 16 2 C -0.06 -0.63 2.39 -91.77 -0.22 -0.85 16 3 C -0.14 -1.23 8.73 37.16 0.32 -0.90 16 4 C 0.24 2.64 5.83 -81.82 -0.48 2.17 16 5 N -0.52 -5.25 9.33 -10.48 -0.10 -5.35 16 6 C 0.32 2.75 12.27 -92.02 -1.13 1.62 16 7 N -0.53 -5.08 10.42 -14.24 -0.15 -5.23 16 8 C 0.19 1.71 10.80 -16.78 -0.18 1.53 16 9 C -0.24 -2.58 5.91 -104.69 -0.62 -3.20 16 10 C 0.57 6.85 7.73 -12.34 -0.10 6.75 16 11 O -0.52 -7.39 11.94 5.31 0.06 -7.32 16 12 N -0.69 -7.71 5.30 -54.83 -0.29 -8.00 16 13 C 0.07 0.90 6.14 -68.01 -0.42 0.48 16 14 H 0.14 1.91 7.40 -51.93 -0.38 1.53 16 15 C -0.18 -2.39 9.86 -26.79 -0.26 -2.65 16 16 C -0.10 -1.45 1.94 -154.49 -0.30 -1.75 16 17 C -0.10 -1.52 5.37 -26.45 -0.14 -1.66 16 18 C 0.15 2.93 6.51 -3.68 -0.02 2.91 16 19 N -0.59 -14.12 2.95 -172.25 -0.51 -14.63 16 20 C -0.25 -6.78 9.55 -15.06 -0.14 -6.92 16 21 H 0.07 1.70 7.91 -52.48 -0.41 1.29 16 22 C 0.00 0.06 4.83 -17.43 -0.08 -0.03 16 23 N -0.90 -25.56 11.24 55.49 0.62 -24.94 16 24 Si 0.90 21.29 29.60 -169.99 -5.03 16.26 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.17 3.90 5.44 -3.67 -0.02 3.88 16 29 C -0.11 -1.90 5.83 -26.45 -0.15 -2.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 33 H 0.12 1.46 5.66 -51.93 -0.29 1.17 16 34 H 0.06 0.58 7.80 -51.93 -0.41 0.17 16 35 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.20 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.17 1.11 6.58 -52.49 -0.35 0.77 16 39 H 0.40 3.68 5.29 -40.82 -0.22 3.46 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.54 6.75 -51.93 -0.35 0.19 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 1.06 7.91 -51.93 -0.41 0.65 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.38 5.84 -51.93 -0.30 2.08 16 49 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 50 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -30.64 394.42 -10.77 -41.41 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.71 Total: 3.45 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.62 Total: -1.59 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.42 Total: -58.15 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.06 Total: -7.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.64 -10.77 -41.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016973127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.049 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds