Wall clock time and date at job start Wed Apr 1 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46801 * 2 1 4 4 C 1.50703 * 109.47505 * 119.99794 * 2 1 3 5 5 N 1.32158 * 120.53848 * 267.40143 * 4 2 1 6 6 C 1.31858 * 120.96660 * 179.76078 * 5 4 2 7 7 N 1.31885 * 122.09305 * 0.53043 * 6 5 4 8 8 C 1.32130 * 120.96762 * 359.73572 * 7 6 5 9 9 C 1.39931 * 120.53306 * 87.68252 * 4 2 1 10 10 C 1.47827 * 120.94381 * 359.97438 * 9 4 2 11 11 O 1.21560 * 120.00014 * 353.94780 * 10 9 4 12 12 N 1.34779 * 120.00436 * 173.93987 * 10 9 4 13 13 C 1.46498 * 120.00274 * 179.97438 * 12 10 9 14 14 H 1.09001 * 115.54898 * 9.32142 * 13 12 10 15 15 C 1.53026 * 117.50409 * 223.59147 * 13 12 10 16 16 C 1.52817 * 117.49901 * 155.00325 * 13 12 10 17 17 C 1.53185 * 117.71666 * 359.86291 * 16 13 12 18 18 C 1.53350 * 108.76963 * 158.88737 * 17 16 13 19 19 N 1.46839 * 108.81592 * 51.30971 * 18 17 16 20 20 C 1.36934 * 120.38636 * 123.11607 * 19 18 17 21 21 H 1.08004 * 119.99763 * 333.53170 * 20 19 18 22 22 C 1.38807 * 120.00396 * 153.52485 * 20 19 18 23 23 N 1.31621 * 120.00082 * 339.24466 * 22 20 19 24 24 Si 1.86800 * 120.00195 * 159.24012 * 22 20 19 25 25 H 1.48498 * 109.47238 * 90.00170 * 24 22 20 26 26 H 1.48502 * 109.46975 * 210.00288 * 24 22 20 27 27 H 1.48502 * 109.47097 * 329.99960 * 24 22 20 28 28 C 1.46849 * 119.23326 * 303.09468 * 19 18 17 29 29 C 1.53186 * 117.71260 * 215.10009 * 16 13 12 30 30 H 1.08992 * 109.47387 * 60.00394 * 1 2 3 31 31 H 1.09004 * 109.47196 * 299.99565 * 1 2 3 32 32 H 1.09006 * 109.46740 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47615 * 240.00119 * 2 1 3 34 34 H 1.08991 * 109.47145 * 60.00429 * 3 2 1 35 35 H 1.09009 * 109.47083 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47153 * 299.99576 * 3 2 1 37 37 H 1.08001 * 118.95354 * 180.27333 * 6 5 4 38 38 H 1.08001 * 120.53724 * 179.97438 * 8 7 6 39 39 H 0.97005 * 119.99340 * 0.02562 * 12 10 9 40 40 H 1.08997 * 117.50474 * 359.97438 * 15 13 12 41 41 H 1.08997 * 117.50593 * 145.05131 * 15 13 12 42 42 H 1.08994 * 109.58680 * 278.67627 * 17 16 13 43 43 H 1.09001 * 109.58216 * 39.10224 * 17 16 13 44 44 H 1.08999 * 109.58080 * 291.50491 * 18 17 16 45 45 H 1.09002 * 109.57501 * 171.10917 * 18 17 16 46 46 H 0.96996 * 120.00600 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.58068 * 297.11380 * 28 19 18 48 48 H 1.09003 * 109.69497 * 176.76772 * 28 19 18 49 49 H 1.09007 * 109.58480 * 320.90277 * 29 16 13 50 50 H 1.08994 * 109.58860 * 81.33165 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.3049 -0.0335 2.3324 6 6 2.7405 -0.6470 3.4152 7 7 2.9345 -1.9510 3.4516 8 6 2.6923 -2.7042 2.3934 9 6 2.2235 -2.0965 1.2229 10 6 1.9381 -2.8966 0.0130 11 8 1.4283 -2.3706 -0.9572 12 7 2.2431 -4.2091 -0.0145 13 6 1.9598 -5.0020 -1.2133 14 1 1.6514 -4.4337 -2.0908 15 6 1.3405 -6.3872 -1.0144 16 6 2.8013 -6.2564 -1.4449 17 6 3.8803 -6.5914 -0.4104 18 6 4.2222 -8.0823 -0.5191 19 7 4.5173 -8.3994 -1.9221 20 6 5.7193 -8.9567 -2.2683 21 1 6.5907 -8.7858 -1.6535 22 6 5.8179 -9.7412 -3.4091 23 7 4.7385 -10.2884 -3.9268 24 14 7.4823 -10.0204 -4.2098 25 1 8.1164 -11.2292 -3.6250 26 1 7.3024 -10.2137 -5.6712 27 1 8.3512 -8.8403 -3.9699 28 6 3.5083 -8.1125 -2.9498 29 6 3.1521 -6.6221 -2.8905 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 2.9489 -0.0626 4.2992 38 1 2.8540 -3.7714 2.4308 39 1 2.6496 -4.6288 0.7598 40 1 1.1444 -6.7087 0.0085 41 1 0.6246 -6.7305 -1.7611 42 1 4.7723 -5.9966 -0.6070 43 1 3.5070 -6.3741 0.5904 44 1 3.3739 -8.6773 -0.1807 45 1 5.0943 -8.3029 0.0965 46 1 4.8073 -10.8369 -4.7238 47 1 2.6157 -8.7092 -2.7620 48 1 3.9083 -8.3535 -3.9347 49 1 2.2955 -6.4252 -3.5353 50 1 4.0048 -6.0291 -3.2208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016973127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:53 Heat of formation + Delta-G solvation = 39.968335 kcal Electronic energy + Delta-G solvation = -30326.799970 eV Core-core repulsion = 26354.716487 eV Total energy + Delta-G solvation = -3972.083482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.51470 -40.93341 -39.65955 -37.40795 -36.83592 -34.77698 -34.07179 -33.44128 -32.43726 -31.59443 -29.93070 -28.08830 -26.47990 -26.19596 -25.90107 -24.07790 -23.39733 -22.60463 -22.07379 -21.54094 -19.81445 -19.06690 -18.84438 -18.20526 -17.78572 -17.08787 -16.74758 -16.54160 -15.96128 -15.66058 -15.57453 -15.43414 -15.29356 -14.98519 -14.94388 -14.73402 -14.57355 -14.15227 -13.95110 -13.75417 -13.31898 -13.10058 -13.04283 -12.87321 -12.78434 -12.60192 -12.53658 -12.46995 -12.27454 -12.25231 -12.11299 -11.95177 -11.75754 -11.64467 -11.36691 -11.25668 -10.85211 -10.74761 -10.64267 -10.44797 -10.36461 -9.68996 -8.64364 -7.86370 -5.27980 -0.67605 -0.10683 1.45610 1.48508 1.57428 1.65245 1.86036 2.52323 2.64807 2.89088 2.96612 3.02419 3.20121 3.28275 3.49585 3.65272 3.70077 3.81536 3.87423 3.98887 4.11771 4.13339 4.15027 4.21197 4.40042 4.54004 4.59226 4.67409 4.74364 4.79927 4.85935 4.90919 4.94176 4.96043 4.96416 5.04065 5.09419 5.10429 5.16845 5.21541 5.30685 5.32717 5.39741 5.42742 5.49325 5.57048 5.66883 5.78960 5.79636 6.36050 6.40687 6.90575 7.03883 7.16885 7.90850 8.39986 9.18929 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002323 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.918197 B =12048.753593 C =12414.491867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.132 4.132 4 C 0.234 3.766 5 N -0.528 5.528 6 C 0.317 3.683 7 N -0.537 5.537 8 C 0.192 3.808 9 C -0.255 4.255 10 C 0.571 3.429 11 O -0.546 6.546 12 N -0.679 5.679 13 C 0.090 3.910 14 H 0.127 0.873 15 C -0.167 4.167 16 C -0.116 4.116 17 C -0.084 4.084 18 C 0.144 3.856 19 N -0.608 5.608 20 C -0.261 4.261 21 H 0.065 0.935 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.960 3.040 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.178 3.822 29 C -0.093 4.093 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.234 0.766 38 H 0.197 0.803 39 H 0.411 0.589 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.000 1.000 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 20.562 13.715 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.081 4.081 3 C -0.189 4.189 4 C 0.087 3.913 5 N -0.242 5.242 6 C 0.031 3.969 7 N -0.250 5.250 8 C 0.025 3.975 9 C -0.263 4.263 10 C 0.358 3.642 11 O -0.426 6.426 12 N -0.329 5.329 13 C -0.016 4.016 14 H 0.145 0.855 15 C -0.206 4.206 16 C -0.118 4.118 17 C -0.123 4.123 18 C 0.019 3.981 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.083 0.917 22 C -0.246 4.246 23 N -0.578 5.578 24 Si 0.788 3.212 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.052 3.948 29 C -0.132 4.132 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.250 0.750 38 H 0.213 0.787 39 H 0.249 0.751 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.018 0.982 48 H 0.072 0.928 49 H 0.086 0.914 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.469 21.386 13.754 26.800 hybrid contribution 0.904 -1.530 -1.123 2.102 sum -7.565 19.857 12.631 24.720 Atomic orbital electron populations 1.21567 0.92260 1.01605 1.02480 1.20566 0.97514 0.96805 0.93221 1.21693 1.00382 0.94012 1.02823 1.22146 0.85660 0.89281 0.94206 1.68442 1.14780 1.40892 1.00101 1.25973 0.86344 0.88356 0.96224 1.68562 1.18437 1.08144 1.29883 1.23891 0.85837 1.01791 0.86002 1.21530 1.10652 0.96659 0.97469 1.17873 0.77968 0.81777 0.86552 1.90720 1.44273 1.70587 1.36979 1.45158 1.62255 1.08194 1.17291 1.21672 1.03831 0.86335 0.89747 0.85546 1.23632 0.95272 0.98008 1.03657 1.21818 0.93249 1.00031 0.96684 1.21465 0.96797 0.97131 0.96933 1.21006 0.97887 0.93826 0.85404 1.44264 1.15497 1.71210 1.02174 1.19494 0.87543 1.23219 1.08861 0.91700 1.25666 0.99828 0.97387 1.01743 1.70196 1.29323 1.34578 1.23712 0.85399 0.80475 0.77943 0.77384 1.21162 1.22000 1.19782 1.20559 0.89814 0.90947 0.93446 1.21615 0.99976 0.97805 0.93845 0.90633 0.92558 0.93629 0.87760 0.91449 0.93560 0.91175 0.75031 0.78675 0.75109 0.87057 0.88009 0.92528 0.89511 0.96314 0.92779 0.94162 0.98218 0.92768 0.91378 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.86 71.98 0.64 -1.58 16 2 C -0.06 -1.23 2.39 -11.54 -0.03 -1.26 16 3 C -0.13 -2.18 8.73 71.98 0.63 -1.55 16 4 C 0.23 4.74 5.83 42.92 0.25 4.99 16 5 N -0.53 -9.67 9.33 -187.06 -1.75 -11.41 16 6 C 0.32 4.69 12.27 180.84 2.22 6.91 16 7 N -0.54 -8.81 10.42 -198.97 -2.07 -10.89 16 8 C 0.19 2.98 10.80 85.07 0.92 3.90 16 9 C -0.26 -4.95 5.91 -19.91 -0.12 -5.07 16 10 C 0.57 12.73 7.73 86.78 0.67 13.40 16 11 O -0.55 -15.01 11.94 -3.90 -0.05 -15.05 16 12 N -0.68 -13.34 5.30 -445.67 -2.36 -15.71 16 13 C 0.09 2.16 6.14 44.94 0.28 2.44 16 14 H 0.13 3.37 7.40 -2.39 -0.02 3.36 16 15 C -0.17 -3.97 9.86 30.55 0.30 -3.67 16 16 C -0.12 -3.35 1.94 -52.17 -0.10 -3.45 16 17 C -0.08 -2.41 5.37 30.77 0.17 -2.25 16 18 C 0.14 5.50 6.51 86.43 0.56 6.06 16 19 N -0.61 -29.53 2.95 -698.89 -2.06 -31.59 16 20 C -0.26 -14.13 9.55 84.03 0.80 -13.33 16 21 H 0.07 3.43 7.91 -2.91 -0.02 3.41 16 22 C -0.05 -2.82 4.83 84.86 0.41 -2.41 16 23 N -0.93 -54.73 11.24 21.65 0.24 -54.49 16 24 Si 0.96 44.63 29.60 68.60 2.03 46.66 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 C 0.18 8.35 5.44 86.43 0.47 8.82 16 29 C -0.09 -3.37 5.83 30.78 0.18 -3.19 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.97 7.29 -2.38 -0.02 0.95 16 33 H 0.10 2.48 5.66 -2.39 -0.01 2.47 16 34 H 0.07 1.09 7.80 -2.39 -0.02 1.07 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.23 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.20 1.79 6.58 -2.91 -0.02 1.77 16 39 H 0.41 5.98 5.29 -92.70 -0.49 5.49 16 40 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 1.75 6.75 -2.39 -0.02 1.73 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 2.03 7.91 -2.39 -0.02 2.01 16 46 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.05 2.94 5.84 -2.39 -0.01 2.92 16 49 H 0.07 2.20 8.10 -2.38 -0.02 2.18 16 50 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -68.19 394.42 2.70 -65.49 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.46 Total: 18.23 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 8.25 Total: 8.76 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -8.00 Total: -124.09 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.05 Total: -15.05 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.19 2.70 -65.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016973127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.456 kcal (2) G-P(sol) polarization free energy of solvation -68.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds