Wall clock time and date at job start Wed Apr 1 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47183 * 2 1 4 4 C 1.38547 * 120.01971 * 124.99795 * 3 2 1 5 5 C 1.40066 * 117.82091 * 180.02562 * 4 3 2 6 6 C 1.48137 * 121.14747 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00029 * 174.25094 * 6 5 4 8 8 N 1.34777 * 120.00063 * 354.25692 * 6 5 4 9 9 C 1.46500 * 120.00201 * 180.02562 * 8 6 5 10 10 C 1.53145 * 109.43496 * 120.03698 * 9 8 6 11 11 C 1.53707 * 108.87718 * 66.17914 * 10 9 8 12 12 H 1.08998 * 112.09770 * 187.60891 * 11 10 9 13 13 C 1.54606 * 107.83058 * 312.22345 * 11 10 9 14 14 C 1.54308 * 104.74916 * 88.66339 * 13 11 10 15 15 C 1.54608 * 104.75382 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.69477 * 147.07142 * 15 14 13 17 17 C 1.53146 * 109.43077 * 240.26420 * 9 8 6 18 18 N 1.48289 * 104.25800 * 25.13581 * 15 14 13 19 19 C 1.36937 * 128.20977 * 138.37996 * 18 15 14 20 20 H 1.07998 * 120.00585 * 191.91648 * 19 18 15 21 21 C 1.38816 * 119.99998 * 11.92160 * 19 18 15 22 22 N 1.31621 * 119.99920 * 11.17261 * 21 19 18 23 23 Si 1.86801 * 120.00090 * 191.17310 * 21 19 18 24 24 H 1.48504 * 109.47081 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47018 * 119.99750 * 23 21 19 26 26 H 1.48501 * 109.47215 * 239.99971 * 23 21 19 27 27 C 1.39769 * 117.70879 * 0.24916 * 5 4 3 28 28 C 1.50700 * 120.17563 * 179.72743 * 27 5 4 29 29 N 1.31896 * 119.65171 * 359.48909 * 27 5 4 30 30 N 1.28284 * 122.32732 * 0.53563 * 29 27 5 31 31 H 1.09002 * 109.47159 * 300.00242 * 1 2 3 32 32 H 1.09004 * 109.47063 * 60.00178 * 1 2 3 33 33 H 1.08993 * 109.46708 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47795 * 240.00003 * 2 1 3 35 35 H 1.09000 * 109.47204 * 119.99330 * 2 1 3 36 36 H 1.08004 * 121.08356 * 0.04228 * 4 3 2 37 37 H 0.97005 * 119.99724 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.43097 * 0.13005 * 9 8 6 39 39 H 1.09003 * 109.56664 * 185.98941 * 10 9 8 40 40 H 1.08997 * 109.57518 * 306.35959 * 10 9 8 41 41 H 1.08994 * 110.38501 * 207.48405 * 13 11 10 42 42 H 1.09002 * 110.38362 * 329.73151 * 13 11 10 43 43 H 1.08997 * 110.38314 * 241.18414 * 14 13 11 44 44 H 1.09008 * 110.38269 * 118.82617 * 14 13 11 45 45 H 1.08991 * 109.57068 * 53.64346 * 17 9 8 46 46 H 1.09007 * 109.56328 * 173.88590 * 17 9 8 47 47 H 0.96997 * 119.99961 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.47007 * 84.17845 * 28 27 5 49 49 H 1.08995 * 109.47415 * 204.17632 * 28 27 5 50 50 H 1.08997 * 109.47081 * 324.17816 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9121 1.8450 0.9827 5 6 3.3492 3.1750 0.9390 6 6 4.2893 3.7063 1.9530 7 8 4.7365 4.8302 1.8372 8 7 4.6487 2.9431 3.0041 9 6 5.5781 3.4687 4.0073 10 6 4.8954 3.4796 5.3781 11 6 4.6324 2.0294 5.8143 12 1 4.0296 1.9767 6.7209 13 6 3.9844 1.2868 4.6231 14 6 5.1741 0.7343 3.8104 15 6 6.4291 1.1944 4.5873 16 1 7.2499 0.4802 4.5212 17 6 6.8262 2.5828 4.0593 18 7 5.9518 1.3723 5.9799 19 6 6.5802 1.0149 7.1429 20 1 6.0373 1.0285 8.0764 21 6 7.9152 0.6351 7.1220 22 7 8.6367 0.8255 6.0378 23 14 8.6878 -0.1461 8.6327 24 1 7.6718 -0.2495 9.7109 25 1 9.1841 -1.5029 8.2893 26 1 9.8213 0.6924 9.0988 27 6 2.8632 3.9853 -0.0909 28 6 3.2921 5.4268 -0.1873 29 7 2.0308 3.4805 -0.9809 30 7 1.6343 2.2613 -0.9352 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.2499 1.1720 1.7569 37 1 4.2915 2.0460 3.0968 38 1 5.8662 4.4847 3.7376 39 1 5.5445 3.9675 6.1053 40 1 3.9499 4.0178 5.3110 41 1 3.3570 0.4704 4.9805 42 1 3.3978 1.9785 4.0183 43 1 5.1746 1.1545 2.8046 44 1 5.1320 -0.3541 3.7679 45 1 7.2473 2.4863 3.0587 46 1 7.5644 3.0308 4.7245 47 1 9.5697 0.5605 6.0233 48 1 4.2444 5.4880 -0.7140 49 1 2.5382 5.9945 -0.7325 50 1 3.4040 5.8403 0.8150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021335245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:15 Heat of formation + Delta-G solvation = 116.935955 kcal Electronic energy + Delta-G solvation = -31910.304120 eV Core-core repulsion = 27941.558204 eV Total energy + Delta-G solvation = -3968.745916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.80044 -40.89267 -38.56034 -35.49844 -34.45359 -33.74282 -32.39729 -31.85881 -31.11395 -30.40923 -29.19536 -27.93500 -26.13517 -24.67778 -23.62777 -23.47757 -22.90840 -21.53598 -20.61637 -19.77944 -19.53328 -17.85309 -17.76072 -16.79189 -15.93882 -15.90709 -15.55387 -14.99948 -14.75123 -14.66843 -14.30475 -14.16145 -13.95219 -13.50151 -13.21535 -13.11669 -13.06521 -12.90083 -12.54264 -12.39106 -12.26118 -12.20096 -12.06862 -11.80829 -11.71179 -11.49167 -11.10608 -11.03075 -11.00645 -10.76639 -10.53703 -10.42543 -10.39806 -10.30978 -10.14850 -9.84906 -9.67391 -9.66517 -9.48773 -9.39802 -8.76389 -8.40131 -6.98681 -5.88477 -3.22871 0.16520 0.63672 2.74131 3.19493 3.31048 3.38280 3.39915 3.43947 3.69311 4.04032 4.18661 4.35345 4.40138 4.63292 4.81860 4.86864 4.95946 4.97091 5.20012 5.24593 5.26200 5.27751 5.41941 5.46286 5.49614 5.58927 5.59903 5.62715 5.68464 5.72667 5.77677 5.79594 5.85582 5.90944 5.99957 6.03320 6.12974 6.19798 6.34703 6.38171 6.40984 6.47290 6.61978 6.73697 6.85055 6.94035 7.34399 7.42253 7.59799 7.63141 8.09021 8.22704 8.48449 9.00677 9.63262 10.38667 11.23400 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.003197 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.303142 B = 8757.045844 C = 9762.880494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C 0.061 3.939 4 C -0.087 4.087 5 C -0.123 4.123 6 C 0.541 3.459 7 O -0.532 6.532 8 N -0.723 5.723 9 C 0.141 3.859 10 C -0.139 4.139 11 C 0.150 3.850 12 H 0.071 0.929 13 C -0.164 4.164 14 C -0.176 4.176 15 C 0.179 3.821 16 H 0.119 0.881 17 C -0.125 4.125 18 N -0.582 5.582 19 C -0.225 4.225 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.912 5.912 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.116 3.884 28 C -0.104 4.104 29 N -0.243 5.243 30 N -0.223 5.223 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.427 0.573 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 0.410 -9.984 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.084 4.084 4 C -0.116 4.116 5 C -0.138 4.138 6 C 0.326 3.674 7 O -0.411 6.411 8 N -0.395 5.395 9 C 0.038 3.962 10 C -0.179 4.179 11 C 0.042 3.958 12 H 0.089 0.911 13 C -0.204 4.204 14 C -0.216 4.216 15 C 0.072 3.928 16 H 0.137 0.863 17 C -0.165 4.165 18 N -0.303 5.303 19 C -0.353 4.353 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.558 5.558 23 Si 0.741 3.259 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.029 4.029 28 C -0.162 4.162 29 N -0.086 5.086 30 N -0.066 5.066 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.169 0.831 37 H 0.287 0.713 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.863 1.296 -11.235 17.128 hybrid contribution 1.250 -1.010 2.046 2.601 sum -11.613 0.287 -9.190 14.812 Atomic orbital electron populations 1.21711 0.93602 1.02260 1.02857 1.20486 0.97409 0.88872 1.04070 1.22830 0.94625 0.98739 0.92177 1.22631 0.94938 0.95349 0.98718 1.21275 0.99607 0.94762 0.98126 1.18165 0.81269 0.85878 0.82107 1.90696 1.54977 1.18834 1.76551 1.49077 1.46742 1.20227 1.23454 1.21209 0.89524 0.98910 0.86581 1.22529 0.99605 0.99469 0.96339 1.21520 0.89296 0.90160 0.94833 0.91104 1.23303 0.97807 1.00071 0.99214 1.23475 0.98746 1.00898 0.98452 1.21602 0.93652 0.94871 0.82703 0.86314 1.22412 0.95427 0.98543 1.00167 1.45206 1.16245 1.67111 1.01751 1.19041 0.92532 1.38145 0.85558 0.90448 1.24790 0.95712 1.01972 0.97652 1.69835 1.07409 1.51184 1.27368 0.86082 0.79055 0.78852 0.81944 1.20501 1.21698 1.21792 1.23138 0.91519 0.98821 0.89375 1.20970 1.01713 0.87828 1.05721 1.73057 1.09282 1.05415 1.20799 1.72733 1.17181 0.97550 1.19130 0.92709 0.91412 0.91764 0.89211 0.89594 0.83120 0.71255 0.89484 0.90470 0.93234 0.91695 0.90821 0.90986 0.91757 0.93652 0.89502 0.93608 0.89471 0.90807 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.78 37.16 0.36 -0.73 16 2 C -0.07 -0.55 6.35 -27.88 -0.18 -0.72 16 3 C 0.06 0.68 6.25 -82.45 -0.52 0.16 16 4 C -0.09 -0.98 9.29 -38.78 -0.36 -1.34 16 5 C -0.12 -1.65 5.92 -104.58 -0.62 -2.27 16 6 C 0.54 8.18 7.73 -12.20 -0.09 8.08 16 7 O -0.53 -9.13 12.85 5.35 0.07 -9.07 16 8 N -0.72 -10.72 2.74 -54.51 -0.15 -10.87 16 9 C 0.14 2.42 3.15 -67.78 -0.21 2.21 16 10 C -0.14 -2.38 5.49 -26.29 -0.14 -2.52 16 11 C 0.15 2.72 4.32 -65.72 -0.28 2.43 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.16 -2.44 5.75 -25.20 -0.14 -2.59 16 14 C -0.18 -2.81 5.69 -25.20 -0.14 -2.96 16 15 C 0.18 3.69 3.19 -65.71 -0.21 3.48 16 16 H 0.12 2.88 6.15 -51.93 -0.32 2.56 16 17 C -0.13 -2.46 5.48 -26.26 -0.14 -2.60 16 18 N -0.58 -12.96 2.83 -152.72 -0.43 -13.39 16 19 C -0.22 -5.67 10.38 -15.06 -0.16 -5.82 16 20 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 21 C 0.00 -0.11 5.42 -17.43 -0.09 -0.21 16 22 N -0.91 -24.25 10.70 55.49 0.59 -23.65 16 23 Si 0.91 20.68 29.57 -169.99 -5.03 15.65 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.12 1.58 6.91 -81.99 -0.57 1.01 16 28 C -0.10 -1.26 9.00 36.01 0.32 -0.93 16 29 N -0.24 -3.47 11.42 33.81 0.39 -3.08 16 30 N -0.22 -2.98 11.04 33.58 0.37 -2.61 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.53 7.92 -51.93 -0.41 0.12 16 36 H 0.15 1.40 6.13 -52.48 -0.32 1.08 16 37 H 0.43 5.75 0.28 -65.43 -0.02 5.73 16 38 H 0.09 1.57 6.89 -51.93 -0.36 1.21 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.97 5.27 -51.93 -0.27 0.70 16 43 H 0.07 1.03 4.81 -51.93 -0.25 0.78 16 44 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.97 8.14 -51.92 -0.42 1.55 16 47 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.11 1.39 5.90 -51.93 -0.31 1.08 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -28.56 377.76 -8.97 -37.53 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.29 Total: 9.11 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.18 Total: -5.32 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.77 Total: -53.60 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.07 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.56 -8.97 -37.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021335245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.468 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds