Wall clock time and date at job start Wed Apr 1 2020 03:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47183 * 2 1 4 4 C 1.38547 * 120.01971 * 124.99795 * 3 2 1 5 5 C 1.40066 * 117.82091 * 180.02562 * 4 3 2 6 6 C 1.48137 * 121.14747 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00029 * 174.25094 * 6 5 4 8 8 N 1.34777 * 120.00063 * 354.25692 * 6 5 4 9 9 C 1.46500 * 120.00201 * 180.02562 * 8 6 5 10 10 C 1.53145 * 109.43496 * 120.03698 * 9 8 6 11 11 C 1.53707 * 108.87718 * 66.17914 * 10 9 8 12 12 H 1.08998 * 112.09770 * 187.60891 * 11 10 9 13 13 C 1.54606 * 107.83058 * 312.22345 * 11 10 9 14 14 C 1.54308 * 104.74916 * 88.66339 * 13 11 10 15 15 C 1.54608 * 104.75382 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.69477 * 147.07142 * 15 14 13 17 17 C 1.53146 * 109.43077 * 240.26420 * 9 8 6 18 18 N 1.48289 * 104.25800 * 25.13581 * 15 14 13 19 19 C 1.36937 * 128.20977 * 138.37996 * 18 15 14 20 20 H 1.07998 * 120.00585 * 191.91648 * 19 18 15 21 21 C 1.38816 * 119.99998 * 11.92160 * 19 18 15 22 22 N 1.31621 * 119.99920 * 11.17261 * 21 19 18 23 23 Si 1.86801 * 120.00090 * 191.17310 * 21 19 18 24 24 H 1.48504 * 109.47081 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47018 * 119.99750 * 23 21 19 26 26 H 1.48501 * 109.47215 * 239.99971 * 23 21 19 27 27 C 1.39769 * 117.70879 * 0.24916 * 5 4 3 28 28 C 1.50700 * 120.17563 * 179.72743 * 27 5 4 29 29 N 1.31896 * 119.65171 * 359.48909 * 27 5 4 30 30 N 1.28284 * 122.32732 * 0.53563 * 29 27 5 31 31 H 1.09002 * 109.47159 * 300.00242 * 1 2 3 32 32 H 1.09004 * 109.47063 * 60.00178 * 1 2 3 33 33 H 1.08993 * 109.46708 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47795 * 240.00003 * 2 1 3 35 35 H 1.09000 * 109.47204 * 119.99330 * 2 1 3 36 36 H 1.08004 * 121.08356 * 0.04228 * 4 3 2 37 37 H 0.97005 * 119.99724 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.43097 * 0.13005 * 9 8 6 39 39 H 1.09003 * 109.56664 * 185.98941 * 10 9 8 40 40 H 1.08997 * 109.57518 * 306.35959 * 10 9 8 41 41 H 1.08994 * 110.38501 * 207.48405 * 13 11 10 42 42 H 1.09002 * 110.38362 * 329.73151 * 13 11 10 43 43 H 1.08997 * 110.38314 * 241.18414 * 14 13 11 44 44 H 1.09008 * 110.38269 * 118.82617 * 14 13 11 45 45 H 1.08991 * 109.57068 * 53.64346 * 17 9 8 46 46 H 1.09007 * 109.56328 * 173.88590 * 17 9 8 47 47 H 0.96997 * 119.99961 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.47007 * 84.17845 * 28 27 5 49 49 H 1.08995 * 109.47415 * 204.17632 * 28 27 5 50 50 H 1.08997 * 109.47081 * 324.17816 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9121 1.8450 0.9827 5 6 3.3492 3.1750 0.9390 6 6 4.2893 3.7063 1.9530 7 8 4.7365 4.8302 1.8372 8 7 4.6487 2.9431 3.0041 9 6 5.5781 3.4687 4.0073 10 6 4.8954 3.4796 5.3781 11 6 4.6324 2.0294 5.8143 12 1 4.0296 1.9767 6.7209 13 6 3.9844 1.2868 4.6231 14 6 5.1741 0.7343 3.8104 15 6 6.4291 1.1944 4.5873 16 1 7.2499 0.4802 4.5212 17 6 6.8262 2.5828 4.0593 18 7 5.9518 1.3723 5.9799 19 6 6.5802 1.0149 7.1429 20 1 6.0373 1.0285 8.0764 21 6 7.9152 0.6351 7.1220 22 7 8.6367 0.8255 6.0378 23 14 8.6878 -0.1461 8.6327 24 1 7.6718 -0.2495 9.7109 25 1 9.1841 -1.5029 8.2893 26 1 9.8213 0.6924 9.0988 27 6 2.8632 3.9853 -0.0909 28 6 3.2921 5.4268 -0.1873 29 7 2.0308 3.4805 -0.9809 30 7 1.6343 2.2613 -0.9352 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.2499 1.1720 1.7569 37 1 4.2915 2.0460 3.0968 38 1 5.8662 4.4847 3.7376 39 1 5.5445 3.9675 6.1053 40 1 3.9499 4.0178 5.3110 41 1 3.3570 0.4704 4.9805 42 1 3.3978 1.9785 4.0183 43 1 5.1746 1.1545 2.8046 44 1 5.1320 -0.3541 3.7679 45 1 7.2473 2.4863 3.0587 46 1 7.5644 3.0308 4.7245 47 1 9.5697 0.5605 6.0233 48 1 4.2444 5.4880 -0.7140 49 1 2.5382 5.9945 -0.7325 50 1 3.4040 5.8403 0.8150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021335245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:14 Heat of formation + Delta-G solvation = 102.108124 kcal Electronic energy + Delta-G solvation = -31910.947103 eV Core-core repulsion = 27941.558204 eV Total energy + Delta-G solvation = -3969.388899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.97553 -42.05886 -39.83432 -36.40751 -35.84330 -34.82430 -33.99649 -32.95813 -32.26247 -31.89981 -30.80199 -28.86659 -27.25355 -26.25362 -24.89435 -24.45831 -24.01860 -22.79594 -21.85263 -21.24077 -20.93966 -19.26201 -18.79375 -18.22992 -16.96856 -16.93051 -16.71841 -16.61849 -16.02156 -15.80038 -15.62532 -15.17008 -14.94376 -14.72292 -14.57942 -14.52098 -14.33040 -14.00684 -13.79287 -13.77601 -13.38747 -13.28936 -13.23051 -13.10733 -12.83277 -12.71108 -12.65593 -12.42604 -12.12524 -12.03509 -11.97016 -11.83367 -11.78681 -11.47737 -11.39059 -11.30664 -11.18445 -11.05390 -10.61010 -10.58217 -10.47881 -9.74962 -8.77896 -7.81568 -5.14858 -0.82623 -0.27581 1.48210 1.51124 1.58983 1.62515 1.97888 2.43181 2.52141 2.82495 3.12165 3.25523 3.35697 3.47345 3.53768 3.62514 3.88384 3.92862 3.99422 4.11114 4.13211 4.20901 4.24207 4.38184 4.40079 4.40479 4.45969 4.57350 4.64040 4.66468 4.68773 4.74696 4.91746 4.93525 4.95524 4.97944 5.06216 5.07156 5.10002 5.20656 5.23004 5.27186 5.31371 5.40106 5.45405 5.52888 5.57154 5.75731 5.84021 6.28581 6.38114 7.02401 7.11473 7.53364 7.78282 8.55854 9.28537 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.003197 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.303142 B = 8757.045844 C = 9762.880494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C 0.065 3.935 4 C -0.073 4.073 5 C -0.136 4.136 6 C 0.545 3.455 7 O -0.554 6.554 8 N -0.714 5.714 9 C 0.154 3.846 10 C -0.132 4.132 11 C 0.141 3.859 12 H 0.076 0.924 13 C -0.152 4.152 14 C -0.166 4.166 15 C 0.171 3.829 16 H 0.079 0.921 17 C -0.116 4.116 18 N -0.603 5.603 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.057 4.057 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.295 1.295 26 H -0.300 1.300 27 C 0.107 3.893 28 C -0.100 4.100 29 N -0.263 5.263 30 N -0.241 5.241 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.177 0.823 37 H 0.433 0.567 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.245 0.755 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 -0.942 -10.429 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.080 4.080 4 C -0.103 4.103 5 C -0.150 4.150 6 C 0.331 3.669 7 O -0.434 6.434 8 N -0.387 5.387 9 C 0.050 3.950 10 C -0.173 4.173 11 C 0.034 3.966 12 H 0.094 0.906 13 C -0.191 4.191 14 C -0.205 4.205 15 C 0.064 3.936 16 H 0.097 0.903 17 C -0.156 4.156 18 N -0.325 5.325 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.251 4.251 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.194 1.194 25 H -0.222 1.222 26 H -0.228 1.228 27 C -0.038 4.038 28 C -0.158 4.158 29 N -0.105 5.105 30 N -0.083 5.083 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.195 0.805 37 H 0.296 0.704 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.447 -0.056 -11.699 19.377 hybrid contribution 2.006 -0.576 2.165 3.007 sum -13.441 -0.632 -9.534 16.491 Atomic orbital electron populations 1.21705 0.93373 1.03270 1.01964 1.20692 0.97534 0.86835 1.05871 1.23359 0.93774 0.99805 0.91084 1.22918 0.93875 0.94575 0.98928 1.21104 1.00083 0.95889 0.97949 1.18367 0.81035 0.85451 0.82016 1.90700 1.55784 1.19950 1.76952 1.48854 1.46343 1.20443 1.23056 1.20858 0.88957 0.97801 0.87399 1.22436 1.00199 0.99201 0.95444 1.21786 0.87662 0.90511 0.96646 0.90622 1.23216 0.97350 1.00825 0.97726 1.23352 0.96514 1.01834 0.98791 1.21506 0.94758 0.94278 0.83061 0.90336 1.22216 0.95792 0.98617 0.99005 1.45396 1.17691 1.67852 1.01530 1.19313 0.92688 1.36803 0.86783 0.90454 1.25421 0.96454 1.03417 0.99788 1.70026 1.06957 1.52575 1.28767 0.85206 0.78017 0.77434 0.79787 1.19390 1.22233 1.22806 1.23295 0.91614 0.99363 0.89531 1.20923 1.02137 0.87543 1.05215 1.73037 1.09906 1.06175 1.21372 1.72682 1.17773 0.97615 1.20263 0.93029 0.92918 0.89824 0.88195 0.86962 0.80549 0.70423 0.90346 0.92812 0.90661 0.89470 0.88340 0.88993 0.90588 0.93551 0.93678 0.94587 0.89488 0.89482 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.78 71.98 0.70 -1.00 16 2 C -0.07 -0.83 6.35 29.85 0.19 -0.64 16 3 C 0.06 1.23 6.25 42.63 0.27 1.50 16 4 C -0.07 -1.38 9.29 22.79 0.21 -1.17 16 5 C -0.14 -3.31 5.92 -19.83 -0.12 -3.43 16 6 C 0.55 15.32 7.73 86.87 0.67 15.99 16 7 O -0.55 -18.44 12.85 -3.77 -0.05 -18.49 16 8 N -0.71 -19.28 2.74 -444.66 -1.22 -20.49 16 9 C 0.15 5.15 3.15 45.09 0.14 5.29 16 10 C -0.13 -4.36 5.49 30.88 0.17 -4.19 16 11 C 0.14 4.80 4.32 45.43 0.20 5.00 16 12 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.15 -3.89 5.75 31.58 0.18 -3.71 16 14 C -0.17 -4.79 5.69 31.59 0.18 -4.61 16 15 C 0.17 7.04 3.19 45.45 0.15 7.19 16 16 H 0.08 3.91 6.15 -2.39 -0.01 3.89 16 17 C -0.12 -4.63 5.48 30.90 0.17 -4.46 16 18 N -0.60 -26.69 2.83 -637.07 -1.80 -28.49 16 19 C -0.23 -11.51 10.38 84.03 0.87 -10.63 16 20 H 0.08 3.82 7.85 -2.91 -0.02 3.80 16 21 C -0.06 -2.98 5.42 84.86 0.46 -2.52 16 22 N -0.93 -51.64 10.70 21.65 0.23 -51.40 16 23 Si 0.97 43.31 29.57 68.60 2.03 45.34 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.11 2.76 6.91 42.92 0.30 3.05 16 28 C -0.10 -2.34 9.00 71.24 0.64 -1.70 16 29 N -0.26 -7.14 11.42 -46.94 -0.54 -7.68 16 30 N -0.24 -5.97 11.04 -47.68 -0.53 -6.49 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.78 7.96 -2.38 -0.02 0.76 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.76 7.92 -2.39 -0.02 0.74 16 36 H 0.18 2.31 6.13 -2.91 -0.02 2.29 16 37 H 0.43 10.02 0.28 -115.82 -0.03 9.99 16 38 H 0.08 2.81 6.89 -2.39 -0.02 2.79 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.10 2.08 5.27 -2.39 -0.01 2.07 16 43 H 0.09 2.29 4.81 -2.39 -0.01 2.28 16 44 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.24 13.40 8.31 -92.71 -0.77 12.63 16 48 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.10 2.44 5.90 -2.39 -0.01 2.43 16 Total: -1.00 -64.60 377.76 4.45 -60.15 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.94 Total: 27.58 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.38 Total: -0.02 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.85 Total: -114.56 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.60 4.45 -60.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021335245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.261 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds