Wall clock time and date at job start Wed Apr 1 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31881 * 118.95086 * 2 1 4 4 C 1.32129 * 120.96403 * 179.72826 * 3 2 1 5 5 C 1.39970 * 118.92369 * 0.56042 * 4 3 2 6 6 C 1.47836 * 120.94291 * 179.72075 * 5 4 3 7 7 O 1.21548 * 120.00280 * 174.15726 * 6 5 4 8 8 N 1.34780 * 119.99620 * 354.15647 * 6 5 4 9 9 C 1.46496 * 119.99641 * 179.97438 * 8 6 5 10 10 C 1.53008 * 109.46940 * 179.97438 * 9 8 6 11 11 H 1.08995 * 109.49381 * 54.93992 * 10 9 8 12 12 C 1.53039 * 109.49573 * 175.00202 * 10 9 8 13 13 C 1.53043 * 109.52416 * 181.35999 * 12 10 9 14 14 C 1.53191 * 109.31051 * 298.61041 * 13 12 10 15 15 N 1.46928 * 108.76378 * 54.66206 * 14 13 12 16 16 C 1.36932 * 120.63275 * 126.40444 * 15 14 13 17 17 H 1.07993 * 120.00235 * 331.95122 * 16 15 14 18 18 C 1.38820 * 120.00002 * 151.95637 * 16 15 14 19 19 N 1.31618 * 119.99505 * 159.53688 * 18 16 15 20 20 Si 1.86797 * 119.99965 * 339.53525 * 18 16 15 21 21 H 1.48503 * 109.47025 * 94.39343 * 20 18 16 22 22 H 1.48490 * 109.47094 * 214.39071 * 20 18 16 23 23 H 1.48496 * 109.47003 * 334.39638 * 20 18 16 24 24 C 1.46929 * 118.73390 * 306.37781 * 15 14 13 25 25 C 1.39932 * 118.12084 * 359.45297 * 5 4 3 26 26 C 1.50703 * 120.53955 * 180.29178 * 25 5 4 27 27 C 1.53000 * 117.49749 * 175.93097 * 26 25 5 28 28 C 1.52997 * 59.99974 * 252.50913 * 27 26 25 29 29 N 1.31853 * 118.95084 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47081 * 269.98023 * 1 2 3 31 31 H 1.09000 * 109.47244 * 29.98549 * 1 2 3 32 32 H 1.09009 * 109.47225 * 149.97726 * 1 2 3 33 33 H 1.08005 * 120.54357 * 180.31093 * 4 3 2 34 34 H 0.96997 * 120.00231 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47298 * 60.00788 * 9 8 6 36 36 H 1.08998 * 109.47802 * 300.00342 * 9 8 6 37 37 H 1.08999 * 109.46150 * 301.37299 * 12 10 9 38 38 H 1.08996 * 109.45845 * 61.34537 * 12 10 9 39 39 H 1.08995 * 109.49782 * 58.58215 * 13 12 10 40 40 H 1.09003 * 109.49520 * 178.67872 * 13 12 10 41 41 H 1.08998 * 109.60240 * 294.87114 * 14 13 12 42 42 H 1.08999 * 109.70301 * 174.50175 * 14 13 12 43 43 H 0.97008 * 119.99048 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58925 * 293.82009 * 24 15 14 45 45 H 1.09003 * 109.70306 * 173.46650 * 24 15 14 46 46 H 1.09000 * 115.54659 * 321.63679 * 26 25 5 47 47 H 1.08996 * 117.50238 * 0.02562 * 27 26 25 48 48 H 1.09001 * 117.49366 * 145.02157 * 27 26 25 49 49 H 1.08996 * 117.50453 * 252.51021 * 28 27 26 50 50 H 1.09004 * 117.49922 * 107.48725 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0054 5 6 4.1855 -0.0001 -0.0009 6 6 5.6638 -0.0002 -0.0014 7 8 6.2716 -1.0479 0.1003 8 7 6.3377 1.1615 -0.1147 9 6 7.8027 1.1615 -0.1147 10 6 8.3127 2.5972 -0.2554 11 1 7.8775 3.2163 0.5290 12 6 9.8379 2.6119 -0.1306 13 6 10.3459 4.0516 -0.2373 14 6 9.9678 4.6219 -1.6079 15 7 8.5177 4.4786 -1.7957 16 6 7.7461 5.5615 -2.1231 17 1 8.0497 6.5524 -1.8195 18 6 6.5737 5.3855 -2.8452 19 7 5.6407 6.3136 -2.8214 20 14 6.3203 3.8318 -3.8507 21 1 5.5695 2.8368 -3.0435 22 1 5.5498 4.1564 -5.0778 23 1 7.6403 3.2668 -4.2298 24 6 7.9112 3.1511 -1.6260 25 6 3.4660 -1.2003 -0.0008 26 6 4.1856 -2.5244 -0.0007 27 6 3.3334 -3.7915 0.0956 28 6 4.1681 -3.3379 1.2949 29 7 2.1453 -1.1538 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3634 0.8901 -0.5136 32 1 -0.3634 -0.8898 -0.5142 33 1 3.9817 2.1493 0.0104 34 1 5.8527 1.9976 -0.1963 35 1 8.1660 0.5638 -0.9507 36 1 8.1661 0.7364 0.8209 37 1 10.1273 2.1953 0.8342 38 1 10.2735 2.0129 -0.9302 39 1 9.8914 4.6569 0.5469 40 1 11.4301 4.0641 -0.1249 41 1 10.4935 4.0738 -2.3897 42 1 10.2398 5.6764 -1.6548 43 1 4.8215 6.1907 -3.3264 44 1 8.2691 2.4830 -2.4094 45 1 6.8258 3.2329 -1.6834 46 1 5.0876 -2.5693 -0.6111 47 1 2.2524 -3.6674 0.1586 48 1 3.6747 -4.6703 -0.4515 49 1 5.0585 -3.9182 1.5369 50 1 3.6362 -2.9153 2.1474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023729851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:58 Heat of formation + Delta-G solvation = 36.353118 kcal Electronic energy + Delta-G solvation = -30738.196863 eV Core-core repulsion = 26765.956613 eV Total energy + Delta-G solvation = -3972.240250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.61381 -40.72120 -39.54215 -38.32119 -36.29161 -35.05360 -34.64020 -34.16934 -32.85279 -32.10041 -30.03492 -27.41290 -27.12303 -26.33163 -24.89465 -24.07907 -23.26419 -22.57074 -22.06176 -21.91909 -20.87079 -19.01795 -18.99011 -18.77058 -17.54534 -17.31830 -16.89613 -16.76823 -16.29825 -16.12394 -15.82025 -15.57892 -15.46594 -15.05447 -14.99117 -14.82272 -14.50727 -14.42728 -13.94703 -13.76155 -13.50649 -13.38236 -13.37401 -13.10441 -13.02977 -12.86295 -12.59437 -12.52053 -12.38954 -12.21773 -12.10689 -11.70413 -11.66037 -11.58417 -11.34080 -11.29098 -11.26812 -10.80948 -10.67521 -10.57816 -10.49822 -10.14831 -8.91944 -8.18804 -5.49561 -0.79714 -0.24645 1.20441 1.36817 1.43251 1.61096 1.93741 2.35497 2.43666 2.62788 2.78577 2.89285 3.02792 3.17326 3.31455 3.46590 3.64129 3.81055 3.92400 3.92676 3.93862 3.98653 4.03741 4.14142 4.31348 4.45326 4.47085 4.49638 4.60667 4.64138 4.71918 4.72453 4.77010 4.77676 4.80535 4.87797 4.95623 4.98605 5.08038 5.11277 5.18243 5.23714 5.24715 5.27772 5.31409 5.36401 5.59972 5.68730 5.86785 6.12276 6.25630 6.80030 6.91412 6.93967 7.61666 8.02881 9.00967 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003551 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.902611 B = 7883.202844 C = 9538.987983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.331 3.669 3 N -0.541 5.541 4 C 0.188 3.812 5 C -0.264 4.264 6 C 0.572 3.428 7 O -0.543 6.543 8 N -0.720 5.720 9 C 0.133 3.867 10 C -0.108 4.108 11 H 0.076 0.924 12 C -0.098 4.098 13 C -0.125 4.125 14 C 0.137 3.863 15 N -0.620 5.620 16 C -0.245 4.245 17 H 0.054 0.946 18 C -0.024 4.024 19 N -0.951 5.951 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.316 1.316 23 H -0.268 1.268 24 C 0.131 3.869 25 C 0.261 3.739 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.138 4.138 29 N -0.526 5.526 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.261 0.739 44 H 0.023 0.977 45 H 0.048 0.952 46 H 0.131 0.869 47 H 0.105 0.895 48 H 0.117 0.883 49 H 0.114 0.886 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -18.523 9.521 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 N -0.256 5.256 4 C 0.021 3.979 5 C -0.271 4.271 6 C 0.358 3.642 7 O -0.423 6.423 8 N -0.371 5.371 9 C 0.010 3.990 10 C -0.128 4.128 11 H 0.094 0.906 12 C -0.136 4.136 13 C -0.164 4.164 14 C 0.012 3.988 15 N -0.344 5.344 16 C -0.375 4.375 17 H 0.072 0.928 18 C -0.220 4.220 19 N -0.597 5.597 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.246 1.246 23 H -0.193 1.193 24 C 0.006 3.994 25 C 0.115 3.885 26 C -0.155 4.155 27 C -0.183 4.183 28 C -0.176 4.176 29 N -0.240 5.240 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.198 0.802 34 H 0.239 0.761 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.149 0.851 47 H 0.124 0.876 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.456 -19.173 9.522 21.685 hybrid contribution 0.310 0.740 -1.067 1.335 sum -3.145 -18.434 8.455 20.523 Atomic orbital electron populations 1.20810 0.82390 1.05540 1.05566 1.24356 1.00185 0.82754 0.86057 1.68396 1.09697 1.30834 1.16686 1.23760 0.90034 0.98146 0.85933 1.21550 0.95961 0.96521 1.13106 1.17728 0.86026 0.83943 0.76515 1.90707 1.69725 1.31118 1.50707 1.46062 1.08621 1.08886 1.73546 1.21485 0.77782 0.96795 1.02928 1.21824 0.98529 0.94312 0.98141 0.90571 1.21372 0.92214 0.97013 1.02971 1.21886 1.01204 0.96181 0.97082 1.21193 0.82421 0.99295 0.95879 1.44490 1.03869 1.04722 1.81355 1.18888 1.02920 0.88077 1.27622 0.92780 1.25762 0.96851 0.99385 0.99955 1.69946 1.07560 1.37416 1.44792 0.86114 0.77578 0.81094 0.78824 1.19962 1.24583 1.19270 1.21364 0.96564 0.86126 0.95338 1.21262 0.88849 0.94200 0.84221 1.21138 1.01433 0.86937 1.06037 1.23093 0.98850 0.95702 1.00703 1.22917 1.02961 1.01051 0.90699 1.68203 1.08627 1.30222 1.16996 0.87346 0.88590 0.87911 0.80195 0.76101 0.91521 0.89368 0.89498 0.91473 0.92796 0.89292 0.95094 0.92895 0.92985 0.95869 0.93403 0.85148 0.87643 0.86518 0.86741 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.33 10.31 71.24 0.73 -0.60 16 2 C 0.33 8.25 7.64 138.71 1.06 9.31 16 3 N -0.54 -15.36 10.31 -186.79 -1.93 -17.28 16 4 C 0.19 5.32 10.80 85.07 0.92 6.24 16 5 C -0.26 -7.59 5.91 -19.91 -0.12 -7.71 16 6 C 0.57 16.94 7.75 86.78 0.67 17.61 16 7 O -0.54 -17.37 13.65 -3.87 -0.05 -17.42 16 8 N -0.72 -20.27 5.29 -465.98 -2.46 -22.74 16 9 C 0.13 3.50 5.07 86.38 0.44 3.94 16 10 C -0.11 -3.15 2.37 -10.72 -0.03 -3.17 16 11 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 12 C -0.10 -2.38 5.17 30.62 0.16 -2.22 16 13 C -0.12 -3.39 6.08 30.67 0.19 -3.20 16 14 C 0.14 4.93 6.52 86.36 0.56 5.49 16 15 N -0.62 -27.69 2.76 -699.10 -1.93 -29.62 16 16 C -0.25 -13.45 10.03 84.04 0.84 -12.61 16 17 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 18 C -0.02 -1.38 5.23 84.86 0.44 -0.93 16 19 N -0.95 -58.21 13.97 21.65 0.30 -57.91 16 20 Si 0.93 45.88 24.36 68.60 1.67 47.55 16 21 H -0.27 -12.42 6.69 99.48 0.67 -11.76 16 22 H -0.32 -16.17 7.11 99.48 0.71 -15.46 16 23 H -0.27 -12.87 6.55 99.48 0.65 -12.22 16 24 C 0.13 5.13 3.29 86.36 0.28 5.41 16 25 C 0.26 7.19 6.53 42.92 0.28 7.47 16 26 C -0.14 -3.30 4.61 -11.54 -0.05 -3.36 16 27 C -0.15 -2.67 10.04 30.59 0.31 -2.36 16 28 C -0.14 -2.69 10.23 30.59 0.31 -2.38 16 29 N -0.53 -13.60 9.35 -175.03 -1.64 -15.23 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.18 4.62 6.58 -2.91 -0.02 4.60 16 34 H 0.40 11.36 5.88 -92.71 -0.54 10.81 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 43 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 44 H 0.02 0.93 7.02 -2.39 -0.02 0.91 16 45 H 0.05 2.05 3.82 -2.39 -0.01 2.04 16 46 H 0.13 3.52 6.39 -2.39 -0.02 3.51 16 47 H 0.11 1.96 7.59 -2.39 -0.02 1.94 16 48 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -69.82 393.16 1.29 -68.53 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.32 Total: 27.18 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 7.01 Total: 16.94 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -7.65 Total: -142.78 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.55 kcal Total: -69.82 1.29 -68.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023729851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.881 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds