Wall clock time and date at job start Wed Apr 1 2020 03:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95265 * 2 1 4 4 C 1.32134 * 120.97241 * 180.02562 * 3 2 1 5 5 C 1.39975 * 118.91811 * 359.97438 * 4 3 2 6 6 C 1.47823 * 120.93473 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00109 * 185.04855 * 6 5 4 8 8 N 1.34779 * 120.00401 * 5.05141 * 6 5 4 9 9 C 1.46502 * 120.00041 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.49526 * 305.05980 * 10 9 8 12 12 C 1.53045 * 109.49683 * 184.99779 * 10 9 8 13 13 C 1.53039 * 109.53484 * 178.68296 * 12 10 9 14 14 C 1.53192 * 109.31432 * 61.36606 * 13 12 10 15 15 N 1.46927 * 108.77454 * 305.36194 * 14 13 12 16 16 C 1.36937 * 120.62740 * 233.58851 * 15 14 13 17 17 H 1.08007 * 119.99932 * 147.76910 * 16 15 14 18 18 C 1.38816 * 120.00250 * 327.76370 * 16 15 14 19 19 N 1.31616 * 119.99774 * 345.26795 * 18 16 15 20 20 Si 1.86795 * 119.99816 * 165.26252 * 18 16 15 21 21 H 1.48497 * 109.47231 * 60.00513 * 20 18 16 22 22 H 1.48501 * 109.47074 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47369 * 300.00077 * 20 18 16 24 24 C 1.46926 * 118.73994 * 53.86156 * 15 14 13 25 25 C 1.39927 * 118.12184 * 0.27714 * 5 4 3 26 26 C 1.50699 * 120.53560 * 179.72008 * 25 5 4 27 27 C 1.52999 * 117.49678 * 178.67122 * 26 25 5 28 28 C 1.53001 * 60.00378 * 252.51317 * 27 26 25 29 29 N 1.31855 * 118.95627 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47285 * 89.99904 * 1 2 3 31 31 H 1.09006 * 109.46635 * 209.99828 * 1 2 3 32 32 H 1.09000 * 109.47057 * 329.99512 * 1 2 3 33 33 H 1.07993 * 120.54208 * 180.02562 * 4 3 2 34 34 H 0.96993 * 119.99994 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47523 * 59.99358 * 9 8 6 36 36 H 1.08999 * 109.46822 * 299.99343 * 9 8 6 37 37 H 1.08997 * 109.46005 * 58.66321 * 12 10 9 38 38 H 1.09004 * 109.44751 * 298.69421 * 12 10 9 39 39 H 1.08998 * 109.49821 * 301.41059 * 13 12 10 40 40 H 1.09005 * 109.52029 * 181.33484 * 13 12 10 41 41 H 1.09001 * 109.58436 * 185.57536 * 14 13 12 42 42 H 1.08993 * 109.70289 * 65.22127 * 14 13 12 43 43 H 0.97002 * 119.99805 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.58306 * 65.92432 * 24 15 14 45 45 H 1.08998 * 109.58614 * 186.35271 * 24 15 14 46 46 H 1.08998 * 115.55114 * 324.38102 * 26 25 5 47 47 H 1.09000 * 117.50039 * 0.02562 * 27 26 25 48 48 H 1.09004 * 117.49823 * 145.02705 * 27 26 25 49 49 H 1.08994 * 117.49942 * 252.51135 * 28 27 26 50 50 H 1.08996 * 117.51354 * 107.47766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2006 -0.0005 5 6 4.1856 0.0000 -0.0005 6 6 5.6638 0.0001 -0.0005 7 8 6.2717 -1.0485 -0.0931 8 7 6.3377 1.1628 0.1023 9 6 7.8027 1.1628 0.1017 10 6 8.3127 2.5998 0.2282 11 1 7.8771 3.2112 -0.5620 12 6 9.8379 2.6134 0.1027 13 6 10.3462 4.0539 0.1962 14 6 9.9682 4.6369 1.5615 15 7 8.5182 4.4952 1.7511 16 6 7.7468 5.5811 2.0689 17 1 6.7267 5.6399 1.7189 18 6 8.2758 6.6065 2.8408 19 7 9.3961 6.4187 3.5057 20 14 7.3979 8.2525 2.9356 21 1 6.0338 8.0549 3.4880 22 1 8.1616 9.1707 3.8181 23 1 7.3008 8.8408 1.5755 24 6 7.9124 3.1653 1.5994 25 6 3.4661 -1.2001 -0.0059 26 6 4.1858 -2.5242 -0.0125 27 6 3.3310 -3.7929 0.0132 28 6 4.1148 -3.3732 1.2584 29 7 2.1453 -1.1537 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 3.9816 2.1495 -0.0001 34 1 5.8527 1.9995 0.1759 35 1 8.1658 0.7295 -0.8302 36 1 8.1663 0.5725 0.9428 37 1 10.1270 2.1880 -0.8583 38 1 10.2736 2.0215 0.9077 39 1 9.8916 4.6521 -0.5934 40 1 11.4303 4.0656 0.0830 41 1 10.2400 5.6919 1.5962 42 1 10.4942 4.0981 2.3495 43 1 9.7660 7.1353 4.0448 44 1 8.2742 2.5068 2.3890 45 1 6.8273 3.2491 1.6591 46 1 5.1124 -2.5528 -0.5858 47 1 2.2482 -3.6699 0.0346 48 1 3.6952 -4.6565 -0.5432 49 1 4.9945 -3.9605 1.5211 50 1 3.5478 -2.9738 2.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023729853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:03 Heat of formation + Delta-G solvation = 49.847064 kcal Electronic energy + Delta-G solvation = -30065.752391 eV Core-core repulsion = 26094.097282 eV Total energy + Delta-G solvation = -3971.655108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65624 -39.53811 -37.88982 -37.39784 -34.94791 -33.92007 -33.30727 -32.92959 -30.58161 -30.46167 -29.09573 -26.06462 -25.35527 -25.13550 -23.82470 -22.50226 -22.15173 -21.37674 -21.03903 -20.73337 -19.19311 -18.03837 -17.81980 -16.70995 -16.59516 -15.88250 -15.67691 -15.35729 -15.14015 -14.87472 -14.50339 -14.22657 -14.11308 -13.77267 -13.55923 -13.44650 -12.97171 -12.82884 -12.78647 -12.40431 -12.30445 -12.22628 -12.17140 -11.87216 -11.71752 -11.54002 -11.32926 -11.04232 -10.80030 -10.73603 -10.57650 -10.40201 -10.29460 -10.23375 -9.99935 -9.78215 -9.62042 -9.57892 -9.53918 -9.46210 -9.02697 -8.51448 -6.66155 -5.83933 -3.31860 0.17050 0.72366 2.67978 3.01885 3.34400 3.36924 3.40529 3.41016 3.51173 3.67148 3.76852 4.06160 4.43416 4.46348 4.60542 4.76396 4.82909 4.85059 4.96532 5.05446 5.18043 5.20044 5.24622 5.37114 5.41189 5.49159 5.52166 5.55707 5.57628 5.69409 5.76801 5.86550 5.93003 5.96277 6.01126 6.08987 6.17734 6.26329 6.31201 6.40428 6.53854 6.64752 6.64857 6.71746 6.80403 6.91066 7.33542 7.38955 7.61037 7.74029 7.74394 8.07409 8.42230 9.16521 9.78378 10.37830 11.24189 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.002696 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.747788 B =10385.060841 C =12086.717837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.338 3.662 3 N -0.524 5.524 4 C 0.192 3.808 5 C -0.246 4.246 6 C 0.569 3.431 7 O -0.530 6.530 8 N -0.715 5.715 9 C 0.128 3.872 10 C -0.119 4.119 11 H 0.074 0.926 12 C -0.099 4.099 13 C -0.142 4.142 14 C 0.172 3.828 15 N -0.590 5.590 16 C -0.260 4.260 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.154 3.846 25 C 0.268 3.732 26 C -0.123 4.123 27 C -0.163 4.163 28 C -0.149 4.149 29 N -0.523 5.523 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.019 0.981 43 H 0.255 0.745 44 H 0.019 0.981 45 H 0.049 0.951 46 H 0.154 0.846 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 -15.760 -8.660 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 N -0.239 5.239 4 C 0.024 3.976 5 C -0.253 4.253 6 C 0.355 3.645 7 O -0.408 6.408 8 N -0.367 5.367 9 C 0.005 3.995 10 C -0.140 4.140 11 H 0.092 0.908 12 C -0.137 4.137 13 C -0.181 4.181 14 C 0.046 3.954 15 N -0.312 5.312 16 C -0.390 4.390 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.027 3.973 25 C 0.122 3.878 26 C -0.142 4.142 27 C -0.200 4.200 28 C -0.187 4.187 29 N -0.237 5.237 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.192 0.808 34 H 0.237 0.763 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.067 0.933 46 H 0.171 0.829 47 H 0.124 0.876 48 H 0.116 0.884 49 H 0.121 0.879 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.939 -16.341 -8.582 21.982 hybrid contribution 0.391 1.566 0.186 1.625 sum -11.547 -14.775 -8.397 20.546 Atomic orbital electron populations 1.20640 0.85272 1.04525 1.04167 1.23515 0.98451 0.83239 0.87533 1.68307 1.09656 1.30031 1.15886 1.23546 0.89687 0.97744 0.86578 1.21543 0.96252 0.96032 1.11495 1.17676 0.85717 0.84215 0.76917 1.90693 1.69349 1.30740 1.49995 1.45988 1.08426 1.08564 1.73674 1.21531 0.77713 0.98338 1.01949 1.22063 0.96978 0.93296 1.01651 0.90792 1.21329 0.94009 0.98062 1.00294 1.22169 0.98787 0.95360 1.01775 1.20732 0.83855 1.00675 0.90146 1.43980 1.03737 1.02450 1.81058 1.19065 0.96706 0.96877 1.26317 0.92001 1.25164 0.97920 0.99907 0.96148 1.70009 1.21577 1.32051 1.30667 0.86389 0.79063 0.83831 0.77554 1.20785 1.21601 1.20923 1.20996 0.96386 0.88116 0.91814 1.20983 0.88363 0.93801 0.84688 1.21429 1.01470 0.86182 1.05098 1.23009 0.99390 0.96712 1.00926 1.22887 1.02772 1.01786 0.91286 1.68101 1.09041 1.30123 1.16477 0.89216 0.89382 0.89194 0.80847 0.76318 0.91635 0.91200 0.93397 0.92415 0.92733 0.93158 0.90200 0.96301 0.93500 0.96268 0.93268 0.82911 0.87590 0.88384 0.87856 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.31 36.00 0.37 -0.27 16 2 C 0.34 3.79 7.64 -157.06 -1.20 2.59 16 3 N -0.52 -6.30 10.31 -10.39 -0.11 -6.41 16 4 C 0.19 2.19 10.80 -16.77 -0.18 2.00 16 5 C -0.25 -3.06 5.91 -104.69 -0.62 -3.68 16 6 C 0.57 7.64 7.76 -12.34 -0.10 7.54 16 7 O -0.53 -8.17 13.49 5.31 0.07 -8.09 16 8 N -0.72 -8.92 5.29 -61.26 -0.32 -9.25 16 9 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 10 C -0.12 -1.84 2.39 -90.27 -0.22 -2.05 16 11 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 12 C -0.10 -1.54 5.17 -26.69 -0.14 -1.68 16 13 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 14 C 0.17 3.94 5.26 -3.71 -0.02 3.92 16 15 N -0.59 -14.07 2.97 -172.05 -0.51 -14.58 16 16 C -0.26 -6.86 9.55 -15.06 -0.14 -7.00 16 17 H 0.06 1.58 7.87 -52.48 -0.41 1.17 16 18 C 0.01 0.22 4.94 -17.43 -0.09 0.14 16 19 N -0.90 -25.64 11.37 55.49 0.63 -25.01 16 20 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.15 2.97 5.63 -3.48 -0.02 2.95 16 25 C 0.27 3.37 6.53 -81.82 -0.53 2.84 16 26 C -0.12 -1.42 4.88 -91.77 -0.45 -1.87 16 27 C -0.16 -1.52 10.04 -26.73 -0.27 -1.79 16 28 C -0.15 -1.50 10.23 -26.73 -0.27 -1.78 16 29 N -0.52 -6.26 9.34 -6.67 -0.06 -6.32 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.17 1.56 6.57 -52.49 -0.34 1.22 16 34 H 0.40 4.47 5.88 -40.82 -0.24 4.23 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 2.07 6.32 -51.93 -0.33 1.74 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.91 7.16 -51.93 -0.37 0.53 16 46 H 0.15 1.94 5.94 -51.93 -0.31 1.64 16 47 H 0.11 1.01 7.58 -51.93 -0.39 0.61 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 399.60 15.07 6.02 6.02 Total: -1.00 -31.11 399.60 -11.24 -42.34 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.88 Total: 4.31 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.05 Total: 0.85 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.37 Total: -61.57 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.11 -11.24 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023729853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.192 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds