Wall clock time and date at job start Wed Apr 1 2020 03:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31887 * 118.95265 * 2 1 4 4 C 1.32134 * 120.97241 * 180.02562 * 3 2 1 5 5 C 1.39975 * 118.91811 * 359.97438 * 4 3 2 6 6 C 1.47823 * 120.93473 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00109 * 185.04855 * 6 5 4 8 8 N 1.34779 * 120.00401 * 5.05141 * 6 5 4 9 9 C 1.46502 * 120.00041 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46923 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.49526 * 305.05980 * 10 9 8 12 12 C 1.53045 * 109.49683 * 184.99779 * 10 9 8 13 13 C 1.53039 * 109.53484 * 178.68296 * 12 10 9 14 14 C 1.53192 * 109.31432 * 61.36606 * 13 12 10 15 15 N 1.46927 * 108.77454 * 305.36194 * 14 13 12 16 16 C 1.36937 * 120.62740 * 233.58851 * 15 14 13 17 17 H 1.08007 * 119.99932 * 147.76910 * 16 15 14 18 18 C 1.38816 * 120.00250 * 327.76370 * 16 15 14 19 19 N 1.31616 * 119.99774 * 345.26795 * 18 16 15 20 20 Si 1.86795 * 119.99816 * 165.26252 * 18 16 15 21 21 H 1.48497 * 109.47231 * 60.00513 * 20 18 16 22 22 H 1.48501 * 109.47074 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47369 * 300.00077 * 20 18 16 24 24 C 1.46926 * 118.73994 * 53.86156 * 15 14 13 25 25 C 1.39927 * 118.12184 * 0.27714 * 5 4 3 26 26 C 1.50699 * 120.53560 * 179.72008 * 25 5 4 27 27 C 1.52999 * 117.49678 * 178.67122 * 26 25 5 28 28 C 1.53001 * 60.00378 * 252.51317 * 27 26 25 29 29 N 1.31855 * 118.95627 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47285 * 89.99904 * 1 2 3 31 31 H 1.09006 * 109.46635 * 209.99828 * 1 2 3 32 32 H 1.09000 * 109.47057 * 329.99512 * 1 2 3 33 33 H 1.07993 * 120.54208 * 180.02562 * 4 3 2 34 34 H 0.96993 * 119.99994 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47523 * 59.99358 * 9 8 6 36 36 H 1.08999 * 109.46822 * 299.99343 * 9 8 6 37 37 H 1.08997 * 109.46005 * 58.66321 * 12 10 9 38 38 H 1.09004 * 109.44751 * 298.69421 * 12 10 9 39 39 H 1.08998 * 109.49821 * 301.41059 * 13 12 10 40 40 H 1.09005 * 109.52029 * 181.33484 * 13 12 10 41 41 H 1.09001 * 109.58436 * 185.57536 * 14 13 12 42 42 H 1.08993 * 109.70289 * 65.22127 * 14 13 12 43 43 H 0.97002 * 119.99805 * 179.97438 * 19 18 16 44 44 H 1.08995 * 109.58306 * 65.92432 * 24 15 14 45 45 H 1.08998 * 109.58614 * 186.35271 * 24 15 14 46 46 H 1.08998 * 115.55114 * 324.38102 * 26 25 5 47 47 H 1.09000 * 117.50039 * 0.02562 * 27 26 25 48 48 H 1.09004 * 117.49823 * 145.02705 * 27 26 25 49 49 H 1.08994 * 117.49942 * 252.51135 * 28 27 26 50 50 H 1.08996 * 117.51354 * 107.47766 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2006 -0.0005 5 6 4.1856 0.0000 -0.0005 6 6 5.6638 0.0001 -0.0005 7 8 6.2717 -1.0485 -0.0931 8 7 6.3377 1.1628 0.1023 9 6 7.8027 1.1628 0.1017 10 6 8.3127 2.5998 0.2282 11 1 7.8771 3.2112 -0.5620 12 6 9.8379 2.6134 0.1027 13 6 10.3462 4.0539 0.1962 14 6 9.9682 4.6369 1.5615 15 7 8.5182 4.4952 1.7511 16 6 7.7468 5.5811 2.0689 17 1 6.7267 5.6399 1.7189 18 6 8.2758 6.6065 2.8408 19 7 9.3961 6.4187 3.5057 20 14 7.3979 8.2525 2.9356 21 1 6.0338 8.0549 3.4880 22 1 8.1616 9.1707 3.8181 23 1 7.3008 8.8408 1.5755 24 6 7.9124 3.1653 1.5994 25 6 3.4661 -1.2001 -0.0059 26 6 4.1858 -2.5242 -0.0125 27 6 3.3310 -3.7929 0.0132 28 6 4.1148 -3.3732 1.2584 29 7 2.1453 -1.1537 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 3.9816 2.1495 -0.0001 34 1 5.8527 1.9995 0.1759 35 1 8.1658 0.7295 -0.8302 36 1 8.1663 0.5725 0.9428 37 1 10.1270 2.1880 -0.8583 38 1 10.2736 2.0215 0.9077 39 1 9.8916 4.6521 -0.5934 40 1 11.4303 4.0656 0.0830 41 1 10.2400 5.6919 1.5962 42 1 10.4942 4.0981 2.3495 43 1 9.7660 7.1353 4.0448 44 1 8.2742 2.5068 2.3890 45 1 6.8273 3.2491 1.6591 46 1 5.1124 -2.5528 -0.5858 47 1 2.2482 -3.6699 0.0346 48 1 3.6952 -4.6565 -0.5432 49 1 4.9945 -3.9605 1.5211 50 1 3.5478 -2.9738 2.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023729853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:02 Heat of formation + Delta-G solvation = 32.229419 kcal Electronic energy + Delta-G solvation = -30066.516349 eV Core-core repulsion = 26094.097282 eV Total energy + Delta-G solvation = -3972.419067 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54232 -40.61232 -39.30500 -38.27607 -36.27436 -34.98284 -34.47007 -34.07693 -32.28511 -31.94119 -29.93636 -27.30374 -27.05514 -26.19101 -24.75053 -23.80064 -23.26230 -22.64388 -22.06943 -21.80285 -20.68022 -18.94059 -18.92680 -18.47103 -17.47140 -16.90149 -16.78820 -16.68526 -16.30280 -16.05476 -15.78201 -15.47598 -15.32860 -15.03057 -14.92195 -14.53636 -14.35855 -13.99696 -13.75721 -13.71931 -13.41876 -13.34722 -13.02701 -12.99749 -12.83359 -12.77951 -12.50345 -12.49346 -12.35897 -12.32443 -11.99930 -11.82135 -11.64766 -11.54751 -11.26840 -11.23276 -11.07910 -10.68000 -10.54130 -10.50913 -10.43157 -10.06432 -8.61023 -7.86593 -5.37255 -0.72380 -0.16486 1.47525 1.49360 1.55715 1.69337 2.00241 2.49984 2.51008 2.70347 2.85978 2.94193 3.23109 3.29054 3.54021 3.60261 3.73466 3.94733 3.99305 4.01814 4.02530 4.07293 4.09485 4.18409 4.42556 4.52991 4.58150 4.62815 4.68180 4.73511 4.78062 4.82325 4.85320 4.89424 4.92078 4.98280 5.01657 5.12439 5.12758 5.23267 5.27637 5.31018 5.35435 5.39299 5.47116 5.57022 5.67775 5.76653 5.78624 6.37613 6.42215 6.87389 7.05511 7.16575 7.86498 8.40684 9.19063 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.002696 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.747788 B =10385.060841 C =12086.717837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.539 5.539 4 C 0.194 3.806 5 C -0.260 4.260 6 C 0.572 3.428 7 O -0.552 6.552 8 N -0.711 5.711 9 C 0.139 3.861 10 C -0.101 4.101 11 H 0.079 0.921 12 C -0.096 4.096 13 C -0.130 4.130 14 C 0.176 3.824 15 N -0.608 5.608 16 C -0.265 4.265 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.276 1.276 24 C 0.152 3.848 25 C 0.258 3.742 26 C -0.141 4.141 27 C -0.145 4.145 28 C -0.148 4.148 29 N -0.530 5.530 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.194 0.806 34 H 0.408 0.592 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.043 0.957 42 H -0.007 1.007 43 H 0.249 0.751 44 H 0.005 0.995 45 H 0.055 0.945 46 H 0.140 0.860 47 H 0.105 0.895 48 H 0.116 0.884 49 H 0.111 0.889 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -16.638 -10.252 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.254 5.254 4 C 0.027 3.973 5 C -0.268 4.268 6 C 0.358 3.642 7 O -0.432 6.432 8 N -0.362 5.362 9 C 0.016 3.984 10 C -0.122 4.122 11 H 0.097 0.903 12 C -0.134 4.134 13 C -0.169 4.169 14 C 0.050 3.950 15 N -0.331 5.331 16 C -0.395 4.395 17 H 0.087 0.913 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.202 1.202 24 C 0.026 3.974 25 C 0.112 3.888 26 C -0.160 4.160 27 C -0.182 4.182 28 C -0.186 4.186 29 N -0.245 5.245 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.211 0.789 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.011 0.989 43 H 0.058 0.942 44 H 0.023 0.977 45 H 0.074 0.926 46 H 0.158 0.842 47 H 0.123 0.877 48 H 0.134 0.866 49 H 0.130 0.870 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.470 -17.234 -10.195 24.133 hybrid contribution 0.818 1.790 0.701 2.089 sum -12.653 -15.444 -9.494 22.107 Atomic orbital electron populations 1.20791 0.82689 1.05466 1.05411 1.24283 1.00054 0.82875 0.86198 1.68405 1.09836 1.30458 1.16676 1.23874 0.89753 0.98194 0.85521 1.21485 0.95664 0.96583 1.13049 1.17776 0.86091 0.83934 0.76350 1.90685 1.69873 1.31502 1.51112 1.45903 1.08097 1.08774 1.73419 1.21348 0.78176 0.96579 1.02339 1.21819 0.97178 0.94307 0.98873 0.90255 1.21329 0.93753 0.96248 1.02112 1.21995 1.00105 0.96697 0.98101 1.20568 0.83583 0.98483 0.92383 1.44252 1.03945 1.03679 1.81254 1.19466 0.97144 0.97663 1.25242 0.91323 1.25916 0.98845 1.03174 0.96429 1.70172 1.23295 1.32628 1.31987 0.85389 0.78027 0.79828 0.77474 1.19986 1.22392 1.20197 1.21130 0.96552 0.85926 0.93790 1.21232 0.88864 0.94285 0.84422 1.21379 1.01649 0.86792 1.06156 1.23065 0.99078 0.95994 1.00067 1.22931 1.03254 1.01432 0.91012 1.68185 1.08715 1.30479 1.17073 0.87616 0.88257 0.88387 0.78937 0.75497 0.90223 0.91996 0.89959 0.92626 0.92745 0.91303 0.93809 0.98919 0.94200 0.97694 0.92607 0.84226 0.87651 0.86583 0.87026 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.31 71.23 0.73 -0.34 16 2 C 0.33 6.95 7.64 138.70 1.06 8.01 16 3 N -0.54 -12.23 10.31 -186.79 -1.93 -14.16 16 4 C 0.19 4.18 10.80 85.07 0.92 5.10 16 5 C -0.26 -6.28 5.91 -19.91 -0.12 -6.40 16 6 C 0.57 14.80 7.76 86.78 0.67 15.48 16 7 O -0.55 -16.65 13.49 -3.90 -0.05 -16.70 16 8 N -0.71 -16.58 5.29 -465.99 -2.46 -19.04 16 9 C 0.14 3.45 5.07 86.38 0.44 3.89 16 10 C -0.10 -2.92 2.39 -10.57 -0.03 -2.94 16 11 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.10 -2.77 5.17 30.62 0.16 -2.61 16 13 C -0.13 -4.53 6.08 30.67 0.19 -4.34 16 14 C 0.18 8.23 5.26 86.36 0.45 8.69 16 15 N -0.61 -29.20 2.97 -698.25 -2.07 -31.27 16 16 C -0.26 -14.02 9.55 84.03 0.80 -13.22 16 17 H 0.07 3.47 7.87 -2.91 -0.02 3.45 16 18 C -0.05 -2.62 4.94 84.86 0.42 -2.20 16 19 N -0.94 -55.02 11.37 21.65 0.25 -54.78 16 20 Si 0.96 43.94 29.58 68.60 2.03 45.97 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.15 5.77 5.63 86.51 0.49 6.26 16 25 C 0.26 6.33 6.53 42.92 0.28 6.61 16 26 C -0.14 -3.18 4.88 -11.54 -0.06 -3.23 16 27 C -0.15 -2.50 10.04 30.59 0.31 -2.19 16 28 C -0.15 -2.86 10.23 30.60 0.31 -2.55 16 29 N -0.53 -12.12 9.34 -175.03 -1.63 -13.75 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.19 3.15 6.57 -2.91 -0.02 3.14 16 34 H 0.41 8.35 5.88 -92.71 -0.55 7.80 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.04 2.34 6.32 -2.39 -0.02 2.33 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.06 2.01 7.16 -2.39 -0.02 1.99 16 46 H 0.14 3.54 5.94 -2.39 -0.01 3.52 16 47 H 0.11 1.84 7.58 -2.39 -0.02 1.82 16 48 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.36 399.60 1.57 -66.79 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.41 Total: 22.93 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 7.03 Total: 14.01 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -7.85 Total: -133.00 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.36 1.57 -66.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023729853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.020 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds