Wall clock time and date at job start Wed Apr 1 2020 03:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31880 * 118.95430 * 2 1 4 4 C 1.32131 * 120.96873 * 179.97438 * 3 2 1 5 5 C 1.39964 * 118.92245 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.93884 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99951 * 174.54640 * 6 5 4 8 8 N 1.34770 * 119.99792 * 354.54758 * 6 5 4 9 9 C 1.46501 * 119.99657 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47124 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.70441 * 300.02800 * 10 9 8 12 12 C 1.52758 * 109.51185 * 179.91180 * 10 9 8 13 13 C 1.53039 * 109.38722 * 185.70844 * 12 10 9 14 14 C 1.53045 * 109.53991 * 61.23468 * 13 12 10 15 15 C 1.53195 * 109.31050 * 298.63959 * 14 13 12 16 16 N 1.46925 * 109.58583 * 60.38432 * 10 9 8 17 17 C 1.36941 * 120.62983 * 353.41383 * 16 10 9 18 18 H 1.07992 * 119.99371 * 41.24950 * 17 16 10 19 19 C 1.38806 * 119.99848 * 220.97004 * 17 16 10 20 20 N 1.31621 * 119.99892 * 213.39651 * 19 17 16 21 21 Si 1.86802 * 120.00284 * 33.39580 * 19 17 16 22 22 H 1.48504 * 109.47025 * 85.56128 * 21 19 17 23 23 H 1.48496 * 109.47274 * 205.55571 * 21 19 17 24 24 H 1.48494 * 109.46992 * 325.56136 * 21 19 17 25 25 C 1.39930 * 118.12396 * 0.27781 * 5 4 3 26 26 C 1.50700 * 120.54155 * 179.69962 * 25 5 4 27 27 C 1.53000 * 117.50013 * 169.87129 * 26 25 5 28 28 C 1.52997 * 117.49827 * 101.24940 * 26 25 5 29 29 N 1.31851 * 118.94978 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47073 * 90.00315 * 1 2 3 31 31 H 1.08996 * 109.47310 * 210.00095 * 1 2 3 32 32 H 1.08997 * 109.47363 * 330.00340 * 1 2 3 33 33 H 1.07999 * 120.53850 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00342 * 359.97438 * 8 6 5 35 35 H 1.09008 * 109.47036 * 60.00458 * 9 8 6 36 36 H 1.08997 * 109.47223 * 300.00123 * 9 8 6 37 37 H 1.08997 * 109.56788 * 65.66661 * 12 10 9 38 38 H 1.09007 * 109.38483 * 305.63272 * 12 10 9 39 39 H 1.09003 * 109.45697 * 301.21842 * 13 12 10 40 40 H 1.08998 * 109.45035 * 181.24980 * 13 12 10 41 41 H 1.08996 * 109.50083 * 178.68853 * 14 13 12 42 42 H 1.09000 * 109.49392 * 58.58829 * 14 13 12 43 43 H 1.08993 * 109.58802 * 294.84659 * 15 14 13 44 44 H 1.09000 * 109.69867 * 174.48721 * 15 14 13 45 45 H 0.97000 * 119.99990 * 180.02562 * 20 19 17 46 46 H 1.08994 * 115.54783 * 315.58084 * 26 25 5 47 47 H 1.08998 * 117.49546 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.49781 * 145.02257 * 27 26 25 49 49 H 1.09001 * 117.50242 * 214.98232 * 28 26 25 50 50 H 1.09008 * 117.49566 * 359.97404 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0016 6 6 5.6639 -0.0002 0.0028 7 8 6.2715 -1.0481 0.1037 8 7 6.3378 1.1616 -0.1081 9 6 7.8028 1.1616 -0.1064 10 6 8.3130 2.5976 -0.2431 11 1 7.9525 3.0283 -1.1773 12 6 9.8406 2.5988 -0.2392 13 6 10.3474 4.0428 -0.2325 14 6 9.8588 4.7509 1.0332 15 6 8.3271 4.7760 1.0404 16 7 7.8309 3.4014 0.8883 17 6 6.9404 2.8775 1.7870 18 1 7.0551 1.8600 2.1302 19 6 5.8937 3.6562 2.2612 20 7 5.4585 3.4944 3.4928 21 14 5.1027 4.9339 1.1515 22 1 4.0472 4.2898 0.3291 23 1 4.4975 6.0051 1.9829 24 1 6.1345 5.5222 0.2602 25 6 3.4661 -1.2003 -0.0039 26 6 4.1856 -2.5244 -0.0098 27 6 3.3491 -3.7841 0.2231 28 6 4.2902 -3.2775 1.3178 29 7 2.1452 -1.1538 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.9817 2.1493 0.0001 34 1 5.8529 1.9978 -0.1891 35 1 8.1672 0.5650 -0.9428 36 1 8.1651 0.7353 0.8291 37 1 10.2084 2.0883 -1.1293 38 1 10.2006 2.0828 0.6509 39 1 9.9673 4.5651 -1.1105 40 1 11.4372 4.0451 -0.2522 41 1 10.2394 5.7722 1.0487 42 1 10.2181 4.2148 1.9116 43 1 7.9677 5.3878 0.2131 44 1 7.9708 5.1907 1.9834 45 1 4.7268 4.0383 3.8240 46 1 5.0272 -2.5990 -0.6984 47 1 2.2782 -3.6551 0.3802 48 1 3.6402 -4.6877 -0.3124 49 1 5.2005 -3.8479 1.5026 50 1 3.8389 -2.8150 2.1957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024785876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:47 Heat of formation + Delta-G solvation = 60.271548 kcal Electronic energy + Delta-G solvation = -31591.531884 eV Core-core repulsion = 27620.328815 eV Total energy + Delta-G solvation = -3971.203069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.20713 -39.11389 -37.92367 -37.08019 -34.34547 -33.43621 -33.08802 -32.86665 -30.99390 -30.73054 -28.82584 -26.29091 -25.26993 -24.60534 -23.36979 -22.50203 -22.14728 -21.10323 -20.71569 -20.23761 -19.41187 -17.57217 -17.48310 -16.51546 -16.23836 -15.61955 -15.38568 -15.16806 -14.93609 -14.81073 -14.04438 -13.96504 -13.85963 -13.72692 -13.56782 -13.21253 -13.15907 -12.63487 -12.56846 -12.46422 -12.26546 -12.03847 -11.82663 -11.64513 -11.45462 -11.37793 -11.36016 -11.11726 -10.84201 -10.67446 -10.55338 -10.40101 -10.24137 -10.03716 -9.92031 -9.75617 -9.61320 -9.23056 -9.17259 -9.12027 -8.58087 -8.30914 -6.82791 -6.20610 -3.53840 0.63646 1.15319 3.19433 3.21814 3.38029 3.39572 3.61592 3.79786 3.93088 4.08556 4.12090 4.41087 4.53211 4.74875 4.96585 5.01760 5.11977 5.16814 5.19859 5.29141 5.32110 5.32799 5.42789 5.46404 5.48441 5.50943 5.75806 5.79264 5.82762 5.86715 5.95111 5.96167 6.03290 6.12922 6.18207 6.22290 6.27280 6.33106 6.41495 6.43150 6.46291 6.48014 6.58113 6.75517 6.83029 6.98566 7.05616 7.06861 7.88499 8.06269 8.16700 8.31419 8.69650 8.85289 9.56426 10.06116 10.93946 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.004159 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.486883 B = 6731.521055 C = 8170.946173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.329 3.671 3 N -0.525 5.525 4 C 0.194 3.806 5 C -0.232 4.232 6 C 0.564 3.436 7 O -0.543 6.543 8 N -0.684 5.684 9 C 0.139 3.861 10 C 0.156 3.844 11 H 0.034 0.966 12 C -0.127 4.127 13 C -0.108 4.108 14 C -0.138 4.138 15 C 0.143 3.857 16 N -0.597 5.597 17 C -0.278 4.278 18 H 0.078 0.922 19 C 0.053 3.947 20 N -0.871 5.871 21 Si 0.822 3.178 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.255 1.255 25 C 0.260 3.740 26 C -0.102 4.102 27 C -0.169 4.169 28 C -0.145 4.145 29 N -0.524 5.524 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.405 0.595 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.065 0.935 45 H 0.265 0.735 46 H 0.139 0.861 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -5.979 -8.897 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.239 5.239 4 C 0.027 3.973 5 C -0.240 4.240 6 C 0.349 3.651 7 O -0.423 6.423 8 N -0.334 5.334 9 C 0.015 3.985 10 C 0.049 3.951 11 H 0.051 0.949 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.177 4.177 15 C 0.018 3.982 16 N -0.322 5.322 17 C -0.406 4.406 18 H 0.096 0.904 19 C -0.151 4.151 20 N -0.509 5.509 21 Si 0.648 3.352 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.180 1.180 25 C 0.113 3.887 26 C -0.121 4.121 27 C -0.206 4.206 28 C -0.183 4.183 29 N -0.238 5.238 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.243 0.757 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.157 0.843 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.120 0.880 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.502 -6.646 -8.658 11.198 hybrid contribution 0.173 1.619 -0.363 1.668 sum -2.329 -5.027 -9.021 10.587 Atomic orbital electron populations 1.20581 0.85596 1.04269 1.03814 1.23427 0.98277 0.83414 0.88597 1.68274 1.09905 1.29964 1.15801 1.23673 0.89485 0.98181 0.85949 1.21624 0.96824 0.95623 1.09887 1.17580 0.85520 0.84398 0.77568 1.90695 1.69282 1.31115 1.51214 1.45807 1.07730 1.08483 1.71366 1.21290 0.79104 0.96608 1.01492 1.20776 0.92466 0.90484 0.91342 0.94866 1.21834 0.96820 0.96735 1.01251 1.21363 0.98942 0.96038 0.98233 1.22049 0.99030 0.98875 0.97764 1.21329 0.90803 0.86587 0.99512 1.44328 1.49807 1.11122 1.26966 1.18646 1.03897 1.00434 1.17604 0.90431 1.25570 0.97225 0.96739 0.95545 1.70052 1.27280 1.40303 1.13255 0.87757 0.81120 0.83005 0.83340 1.20786 1.21929 1.18003 1.20914 0.88369 0.93720 0.85667 1.20939 1.00897 0.86894 1.03385 1.23015 0.98533 0.96428 1.02616 1.22834 1.01580 1.02057 0.91825 1.68044 1.09072 1.30074 1.16657 0.89541 0.89571 0.89452 0.81027 0.75720 0.92240 0.90913 0.92653 0.91656 0.92836 0.93190 0.93203 0.91982 0.95741 0.91615 0.92543 0.84336 0.87801 0.88649 0.87980 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.31 36.01 0.37 -0.56 16 2 C 0.33 5.22 7.64 -157.07 -1.20 4.02 16 3 N -0.52 -9.42 10.31 -10.39 -0.11 -9.53 16 4 C 0.19 3.61 10.80 -16.78 -0.18 3.43 16 5 C -0.23 -4.28 5.91 -104.69 -0.62 -4.90 16 6 C 0.56 10.84 7.75 -12.33 -0.10 10.74 16 7 O -0.54 -10.95 13.80 5.32 0.07 -10.88 16 8 N -0.68 -12.81 3.98 -61.25 -0.24 -13.06 16 9 C 0.14 2.45 4.45 -4.04 -0.02 2.44 16 10 C 0.16 2.71 2.99 -67.82 -0.20 2.51 16 11 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 12 C -0.13 -1.90 5.34 -26.84 -0.14 -2.05 16 13 C -0.11 -1.56 5.89 -26.69 -0.16 -1.71 16 14 C -0.14 -2.26 6.08 -26.61 -0.16 -2.42 16 15 C 0.14 2.82 4.56 -3.71 -0.02 2.81 16 16 N -0.60 -12.41 2.46 -165.03 -0.41 -12.82 16 17 C -0.28 -6.76 6.74 -15.06 -0.10 -6.86 16 18 H 0.08 2.13 6.63 -52.49 -0.35 1.79 16 19 C 0.05 1.36 4.85 -17.43 -0.08 1.27 16 20 N -0.87 -24.55 13.97 55.49 0.78 -23.77 16 21 Si 0.82 18.97 27.08 -169.99 -4.60 14.37 16 22 H -0.28 -6.31 6.28 56.52 0.36 -5.95 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.26 -5.63 5.11 56.52 0.29 -5.35 16 25 C 0.26 4.47 6.52 -81.81 -0.53 3.94 16 26 C -0.10 -1.57 4.37 -91.77 -0.40 -1.97 16 27 C -0.17 -2.10 10.04 -26.73 -0.27 -2.37 16 28 C -0.14 -2.03 10.23 -26.73 -0.27 -2.31 16 29 N -0.52 -8.52 9.39 -6.67 -0.06 -8.58 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.17 3.27 5.50 -52.49 -0.29 2.99 16 34 H 0.41 7.80 5.57 -40.82 -0.23 7.57 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.07 1.44 7.40 -51.93 -0.38 1.06 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.49 6.63 -51.93 -0.34 0.14 16 44 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.14 2.18 6.79 -51.93 -0.35 1.83 16 47 H 0.10 1.31 7.62 -51.93 -0.40 0.92 16 48 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.09 1.35 8.14 -51.92 -0.42 0.92 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -28.77 389.37 -10.71 -39.48 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -7.91 Total: 12.92 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -4.09 Total: 6.00 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.05 Total: -67.76 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.60 Total: 14.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.77 -10.71 -39.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024785876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.752 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds