Wall clock time and date at job start Wed Apr 1 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31880 * 118.95430 * 2 1 4 4 C 1.32131 * 120.96873 * 179.97438 * 3 2 1 5 5 C 1.39964 * 118.92245 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.93884 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99951 * 174.54640 * 6 5 4 8 8 N 1.34770 * 119.99792 * 354.54758 * 6 5 4 9 9 C 1.46501 * 119.99657 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47124 * 180.02562 * 9 8 6 11 11 H 1.08999 * 109.70441 * 300.02800 * 10 9 8 12 12 C 1.52758 * 109.51185 * 179.91180 * 10 9 8 13 13 C 1.53039 * 109.38722 * 185.70844 * 12 10 9 14 14 C 1.53045 * 109.53991 * 61.23468 * 13 12 10 15 15 C 1.53195 * 109.31050 * 298.63959 * 14 13 12 16 16 N 1.46925 * 109.58583 * 60.38432 * 10 9 8 17 17 C 1.36941 * 120.62983 * 353.41383 * 16 10 9 18 18 H 1.07992 * 119.99371 * 41.24950 * 17 16 10 19 19 C 1.38806 * 119.99848 * 220.97004 * 17 16 10 20 20 N 1.31621 * 119.99892 * 213.39651 * 19 17 16 21 21 Si 1.86802 * 120.00284 * 33.39580 * 19 17 16 22 22 H 1.48504 * 109.47025 * 85.56128 * 21 19 17 23 23 H 1.48496 * 109.47274 * 205.55571 * 21 19 17 24 24 H 1.48494 * 109.46992 * 325.56136 * 21 19 17 25 25 C 1.39930 * 118.12396 * 0.27781 * 5 4 3 26 26 C 1.50700 * 120.54155 * 179.69962 * 25 5 4 27 27 C 1.53000 * 117.50013 * 169.87129 * 26 25 5 28 28 C 1.52997 * 117.49827 * 101.24940 * 26 25 5 29 29 N 1.31851 * 118.94978 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47073 * 90.00315 * 1 2 3 31 31 H 1.08996 * 109.47310 * 210.00095 * 1 2 3 32 32 H 1.08997 * 109.47363 * 330.00340 * 1 2 3 33 33 H 1.07999 * 120.53850 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00342 * 359.97438 * 8 6 5 35 35 H 1.09008 * 109.47036 * 60.00458 * 9 8 6 36 36 H 1.08997 * 109.47223 * 300.00123 * 9 8 6 37 37 H 1.08997 * 109.56788 * 65.66661 * 12 10 9 38 38 H 1.09007 * 109.38483 * 305.63272 * 12 10 9 39 39 H 1.09003 * 109.45697 * 301.21842 * 13 12 10 40 40 H 1.08998 * 109.45035 * 181.24980 * 13 12 10 41 41 H 1.08996 * 109.50083 * 178.68853 * 14 13 12 42 42 H 1.09000 * 109.49392 * 58.58829 * 14 13 12 43 43 H 1.08993 * 109.58802 * 294.84659 * 15 14 13 44 44 H 1.09000 * 109.69867 * 174.48721 * 15 14 13 45 45 H 0.97000 * 119.99990 * 180.02562 * 20 19 17 46 46 H 1.08994 * 115.54783 * 315.58084 * 26 25 5 47 47 H 1.08998 * 117.49546 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.49781 * 145.02257 * 27 26 25 49 49 H 1.09001 * 117.50242 * 214.98232 * 28 26 25 50 50 H 1.09008 * 117.49566 * 359.97404 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0001 0.0016 6 6 5.6639 -0.0002 0.0028 7 8 6.2715 -1.0481 0.1037 8 7 6.3378 1.1616 -0.1081 9 6 7.8028 1.1616 -0.1064 10 6 8.3130 2.5976 -0.2431 11 1 7.9525 3.0283 -1.1773 12 6 9.8406 2.5988 -0.2392 13 6 10.3474 4.0428 -0.2325 14 6 9.8588 4.7509 1.0332 15 6 8.3271 4.7760 1.0404 16 7 7.8309 3.4014 0.8883 17 6 6.9404 2.8775 1.7870 18 1 7.0551 1.8600 2.1302 19 6 5.8937 3.6562 2.2612 20 7 5.4585 3.4944 3.4928 21 14 5.1027 4.9339 1.1515 22 1 4.0472 4.2898 0.3291 23 1 4.4975 6.0051 1.9829 24 1 6.1345 5.5222 0.2602 25 6 3.4661 -1.2003 -0.0039 26 6 4.1856 -2.5244 -0.0098 27 6 3.3491 -3.7841 0.2231 28 6 4.2902 -3.2775 1.3178 29 7 2.1452 -1.1538 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 3.9817 2.1493 0.0001 34 1 5.8529 1.9978 -0.1891 35 1 8.1672 0.5650 -0.9428 36 1 8.1651 0.7353 0.8291 37 1 10.2084 2.0883 -1.1293 38 1 10.2006 2.0828 0.6509 39 1 9.9673 4.5651 -1.1105 40 1 11.4372 4.0451 -0.2522 41 1 10.2394 5.7722 1.0487 42 1 10.2181 4.2148 1.9116 43 1 7.9677 5.3878 0.2131 44 1 7.9708 5.1907 1.9834 45 1 4.7268 4.0383 3.8240 46 1 5.0272 -2.5990 -0.6984 47 1 2.2782 -3.6551 0.3802 48 1 3.6402 -4.6877 -0.3124 49 1 5.2005 -3.8479 1.5026 50 1 3.8389 -2.8150 2.1957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024785876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:45 Heat of formation + Delta-G solvation = 44.095538 kcal Electronic energy + Delta-G solvation = -31592.233329 eV Core-core repulsion = 27620.328815 eV Total energy + Delta-G solvation = -3971.904513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.53898 -40.60131 -39.39598 -38.26000 -35.80899 -34.88190 -34.74320 -34.12765 -32.62027 -32.23326 -29.98620 -27.77844 -26.72171 -26.09846 -24.69380 -24.05354 -23.22712 -22.47204 -21.98667 -21.73504 -20.87172 -19.04313 -18.91293 -18.17885 -17.52352 -17.17719 -16.77228 -16.63740 -16.53333 -16.07294 -15.46892 -15.38205 -15.36654 -15.01729 -14.90628 -14.76260 -14.52486 -14.28757 -13.81463 -13.66711 -13.45277 -13.35083 -13.18010 -13.02644 -12.80635 -12.80447 -12.65854 -12.44543 -12.36915 -12.33097 -12.06082 -11.63328 -11.58327 -11.49925 -11.26231 -11.21212 -11.15342 -10.66747 -10.54403 -10.47383 -10.44787 -9.87239 -8.58927 -8.22835 -5.50945 -0.71245 -0.22095 1.33412 1.45024 1.50854 1.76008 2.18658 2.46626 2.51492 2.68415 2.82129 2.88856 2.95439 3.26867 3.39587 3.60329 3.74214 3.90731 3.97925 4.01851 4.06597 4.15521 4.17845 4.22691 4.37906 4.48787 4.50594 4.58114 4.65773 4.71252 4.75112 4.77143 4.79702 4.83313 4.96130 4.98121 5.05482 5.11544 5.12052 5.21341 5.26667 5.30013 5.31061 5.35139 5.37369 5.54592 5.67291 5.72041 5.93881 6.31108 6.53722 6.83412 7.01067 7.17339 7.66681 8.17096 8.96506 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.004159 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.486883 B = 6731.521055 C = 8170.946173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.325 3.675 3 N -0.543 5.543 4 C 0.187 3.813 5 C -0.253 4.253 6 C 0.563 3.437 7 O -0.557 6.557 8 N -0.686 5.686 9 C 0.142 3.858 10 C 0.154 3.846 11 H 0.051 0.949 12 C -0.122 4.122 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.139 3.861 16 N -0.608 5.608 17 C -0.244 4.244 18 H 0.038 0.962 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.312 1.312 24 H -0.234 1.234 25 C 0.259 3.741 26 C -0.124 4.124 27 C -0.137 4.137 28 C -0.151 4.151 29 N -0.521 5.521 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.402 0.598 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.259 0.741 46 H 0.132 0.868 47 H 0.105 0.895 48 H 0.124 0.876 49 H 0.112 0.888 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 -6.365 -11.577 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 N -0.258 5.258 4 C 0.020 3.980 5 C -0.261 4.261 6 C 0.348 3.652 7 O -0.438 6.438 8 N -0.335 5.335 9 C 0.018 3.982 10 C 0.049 3.951 11 H 0.068 0.932 12 C -0.162 4.162 13 C -0.141 4.141 14 C -0.171 4.171 15 C 0.014 3.986 16 N -0.334 5.334 17 C -0.373 4.373 18 H 0.055 0.945 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.702 3.298 22 H -0.200 1.200 23 H -0.240 1.240 24 H -0.158 1.158 25 C 0.111 3.889 26 C -0.143 4.143 27 C -0.173 4.173 28 C -0.189 4.189 29 N -0.236 5.236 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.179 0.821 34 H 0.239 0.761 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.150 0.850 47 H 0.123 0.877 48 H 0.142 0.858 49 H 0.130 0.870 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.176 -7.024 -11.392 13.559 hybrid contribution 0.119 1.662 0.490 1.737 sum -2.057 -5.362 -10.902 12.322 Atomic orbital electron populations 1.20791 0.82057 1.05448 1.05656 1.24408 1.00278 0.82701 0.86600 1.68333 1.09449 1.31163 1.16840 1.23556 0.90144 0.97897 0.86393 1.21616 0.96407 0.96284 1.11782 1.17744 0.86002 0.84284 0.77142 1.90670 1.69708 1.31477 1.51975 1.45838 1.08181 1.08240 1.71249 1.21334 0.78579 0.97320 1.00950 1.20983 0.94356 0.89412 0.90368 0.93151 1.21805 0.94405 0.97807 1.02143 1.21363 1.00556 0.94938 0.97229 1.21958 0.96084 1.00536 0.98518 1.21351 0.93402 0.85630 0.98240 1.44446 1.49345 1.11915 1.27684 1.18311 1.03759 0.98500 1.16772 0.94458 1.25956 0.98055 0.99043 0.96109 1.70168 1.28639 1.42781 1.15276 0.86896 0.80816 0.80391 0.81690 1.19973 1.23996 1.15798 1.21272 0.88896 0.94109 0.84576 1.20962 1.01859 0.87290 1.04190 1.23102 0.98047 0.95679 1.00509 1.22873 1.02729 1.02163 0.91166 1.68187 1.08462 1.30087 1.16860 0.87105 0.87797 0.88802 0.82115 0.76093 0.89769 0.93826 0.89431 0.93130 0.91536 0.90556 0.90851 0.93636 0.94933 0.94570 0.93224 0.84992 0.87664 0.85823 0.87013 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.31 71.24 0.73 -0.89 16 2 C 0.33 10.04 7.64 138.71 1.06 11.10 16 3 N -0.54 -19.54 10.31 -186.80 -1.93 -21.47 16 4 C 0.19 7.16 10.80 85.07 0.92 8.08 16 5 C -0.25 -9.61 5.91 -19.91 -0.12 -9.73 16 6 C 0.56 22.28 7.75 86.79 0.67 22.95 16 7 O -0.56 -23.03 13.80 -3.88 -0.05 -23.08 16 8 N -0.69 -26.27 3.98 -465.98 -1.86 -28.13 16 9 C 0.14 4.99 4.45 86.38 0.38 5.38 16 10 C 0.15 5.13 2.99 44.83 0.13 5.27 16 11 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 12 C -0.12 -3.33 5.34 30.53 0.16 -3.16 16 13 C -0.10 -2.58 5.89 30.62 0.18 -2.40 16 14 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 15 C 0.14 5.33 4.56 86.36 0.39 5.72 16 16 N -0.61 -25.18 2.46 -676.04 -1.66 -26.84 16 17 C -0.24 -12.30 6.74 84.03 0.57 -11.73 16 18 H 0.04 2.19 6.63 -2.91 -0.02 2.17 16 19 C 0.01 0.39 4.85 84.86 0.41 0.81 16 20 N -0.93 -55.06 13.97 21.65 0.30 -54.75 16 21 Si 0.88 40.30 27.08 68.60 1.86 42.15 16 22 H -0.27 -12.10 6.28 99.48 0.63 -11.47 16 23 H -0.31 -15.33 7.11 99.48 0.71 -14.63 16 24 H -0.23 -9.83 5.11 99.48 0.51 -9.32 16 25 C 0.26 8.92 6.52 42.92 0.28 9.20 16 26 C -0.12 -3.75 4.37 -11.54 -0.05 -3.80 16 27 C -0.14 -3.12 10.04 30.59 0.31 -2.82 16 28 C -0.15 -4.18 10.23 30.59 0.31 -3.86 16 29 N -0.52 -16.55 9.39 -175.03 -1.64 -18.19 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.16 6.37 5.50 -2.91 -0.02 6.36 16 34 H 0.40 15.80 5.57 -92.71 -0.52 15.28 16 35 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.04 1.79 7.40 -2.39 -0.02 1.77 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.03 1.21 6.63 -2.39 -0.02 1.20 16 44 H 0.04 1.59 6.96 -2.39 -0.02 1.57 16 45 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.13 4.15 6.79 -2.39 -0.02 4.14 16 47 H 0.10 2.42 7.62 -2.39 -0.02 2.40 16 48 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 50 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -65.82 389.37 1.71 -64.10 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: 0.16 Total: 39.93 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.54 Total: 26.27 kcal Atomic # 7 Polarization: -142.59 SS G_CDS: -6.79 Total: -149.38 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.86 Total: 42.15 kcal Total: -65.82 1.71 -64.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024785876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.198 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds