Wall clock time and date at job start Wed Apr 1 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31911 * 119.03982 * 2 1 4 4 C 1.32175 * 121.03529 * 180.02562 * 3 2 1 5 5 C 1.38796 * 119.14855 * 0.02562 * 4 3 2 6 6 C 1.39499 * 118.26065 * 359.97438 * 5 4 3 7 7 C 1.48458 * 120.54902 * 180.02562 * 6 5 4 8 8 O 1.21477 * 119.99775 * 8.55273 * 7 6 5 9 9 N 1.34772 * 120.00045 * 188.55430 * 7 6 5 10 10 C 1.46927 * 120.62998 * 8.80891 * 9 7 6 11 11 C 1.53198 * 108.77816 * 126.41245 * 10 9 7 12 12 C 1.53039 * 109.31045 * 54.63351 * 11 10 9 13 13 C 1.53039 * 109.53817 * 298.63862 * 12 11 10 14 14 C 1.46930 * 120.63346 * 188.83102 * 9 7 6 15 15 H 1.08998 * 109.58632 * 113.79918 * 14 9 7 16 16 C 1.53003 * 109.58274 * 353.37421 * 14 9 7 17 17 H 1.09001 * 109.87388 * 312.75532 * 16 14 9 18 18 C 1.54321 * 109.88277 * 73.77516 * 16 14 9 19 19 C 1.55148 * 102.94245 * 141.61078 * 18 16 14 20 20 C 1.54906 * 101.58087 * 324.49262 * 19 18 16 21 21 N 1.47024 * 109.87988 * 191.58237 * 16 14 9 22 22 C 1.36931 * 125.65095 * 61.61973 * 21 16 14 23 23 H 1.08005 * 120.00218 * 17.07972 * 22 21 16 24 24 C 1.38812 * 120.00463 * 197.08041 * 22 21 16 25 25 N 1.31622 * 119.99567 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00417 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46942 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47224 * 119.99576 * 26 24 22 29 29 H 1.48501 * 109.46832 * 239.99616 * 26 24 22 30 30 N 1.31552 * 119.04209 * 180.28281 * 2 1 3 31 31 H 1.08998 * 109.47885 * 90.00151 * 1 2 3 32 32 H 1.09007 * 109.47031 * 209.99687 * 1 2 3 33 33 H 1.09003 * 109.47303 * 329.99704 * 1 2 3 34 34 H 1.08003 * 120.42755 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.87275 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.58833 * 246.20142 * 10 9 7 37 37 H 1.08998 * 109.59223 * 6.48129 * 10 9 7 38 38 H 1.09002 * 109.49308 * 294.68426 * 11 10 9 39 39 H 1.08993 * 109.49825 * 174.58421 * 11 10 9 40 40 H 1.09002 * 109.46397 * 178.61733 * 12 11 10 41 41 H 1.09002 * 109.45869 * 58.65618 * 12 11 10 42 42 H 1.09006 * 109.49802 * 181.31456 * 13 12 11 43 43 H 1.08999 * 109.49686 * 301.37726 * 13 12 11 44 44 H 1.09008 * 110.71720 * 259.97028 * 18 16 14 45 45 H 1.08994 * 110.71961 * 23.06221 * 18 16 14 46 46 H 1.09006 * 111.00763 * 82.57079 * 19 18 16 47 47 H 1.09003 * 111.00496 * 206.42380 * 19 18 16 48 48 H 1.09007 * 110.36755 * 155.84882 * 20 19 18 49 49 H 1.08997 * 110.36899 * 278.06438 * 20 19 18 50 50 H 0.96995 * 119.99897 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 -0.0005 5 6 4.1861 0.0114 -0.0016 6 6 3.4761 -1.1894 -0.0015 7 6 4.1925 -2.4896 -0.0021 8 8 5.3969 -2.5195 0.1539 9 7 3.5068 -3.6368 -0.1757 10 6 2.0878 -3.6105 -0.5559 11 6 1.8967 -4.4724 -1.8079 12 6 2.4516 -5.8746 -1.5467 13 6 3.9495 -5.7844 -1.2462 14 6 4.1638 -4.9375 0.0122 15 1 3.7291 -5.4456 0.8730 16 6 5.6621 -4.7271 0.2399 17 1 6.0564 -4.0351 -0.5043 18 6 5.9041 -4.1673 1.6575 19 6 7.1977 -4.8983 2.1036 20 6 7.0093 -6.2904 1.4507 21 7 6.3667 -6.0146 0.1528 22 6 6.4173 -6.8237 -0.9507 23 1 6.1603 -6.4284 -1.9224 24 6 6.7987 -8.1520 -0.8206 25 7 7.1123 -8.6337 0.3635 26 14 6.8684 -9.2556 -2.3261 27 1 6.4721 -8.4788 -3.5281 28 1 8.2512 -9.7678 -2.5010 29 1 5.9366 -10.3978 -2.1461 30 7 2.1456 -1.1501 -0.0057 31 1 -0.3635 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 3.9825 2.1491 -0.0009 35 1 5.2660 0.0165 -0.0024 36 1 1.4838 -4.0104 0.2586 37 1 1.7847 -2.5849 -0.7661 38 1 2.4289 -4.0207 -2.6452 39 1 0.8350 -4.5397 -2.0447 40 1 2.2948 -6.4972 -2.4275 41 1 1.9361 -6.3160 -0.6937 42 1 4.3487 -6.7856 -1.0832 43 1 4.4624 -5.3210 -2.0890 44 1 6.0621 -3.0893 1.6246 45 1 5.0717 -4.4137 2.3166 46 1 8.0838 -4.3993 1.7110 47 1 7.2459 -4.9795 3.1896 48 1 7.9751 -6.7730 1.3008 49 1 6.3656 -6.9156 2.0693 50 1 7.3792 -9.5617 0.4544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025300796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:38 Heat of formation + Delta-G solvation = 92.923116 kcal Electronic energy + Delta-G solvation = -32349.624062 eV Core-core repulsion = 28379.836872 eV Total energy + Delta-G solvation = -3969.787191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59522 -40.14946 -37.30418 -36.74186 -34.29806 -33.48281 -32.66097 -32.13922 -31.14979 -29.02683 -28.76715 -27.30791 -25.76488 -24.60672 -24.15404 -23.48584 -22.15414 -21.03528 -19.91924 -19.45550 -19.30228 -17.89326 -17.17351 -16.62342 -15.91990 -15.69391 -15.61414 -15.30407 -14.81475 -14.60970 -14.34000 -14.09243 -13.85303 -13.65002 -13.47177 -12.93895 -12.92044 -12.80102 -12.70567 -12.47474 -12.13760 -11.90231 -11.63223 -11.43296 -11.30137 -11.08677 -10.94433 -10.88429 -10.73391 -10.59130 -10.48590 -10.18319 -10.06556 -9.99273 -9.81535 -9.63177 -9.42222 -9.26170 -9.19466 -8.75197 -8.33974 -8.02079 -6.59362 -5.70096 -3.02792 0.36460 0.64465 2.79890 3.05973 3.39666 3.46789 3.48239 3.56168 3.65008 3.78793 4.31847 4.53409 4.64900 4.74953 5.07984 5.15755 5.21010 5.23288 5.25456 5.37020 5.46873 5.48584 5.59282 5.61105 5.72187 5.80163 5.85450 5.92833 5.96151 6.09228 6.13730 6.18841 6.27346 6.34598 6.39067 6.42097 6.58993 6.63298 6.66012 6.70762 6.82675 6.93693 6.98012 7.12372 7.36281 7.55727 7.63822 7.67011 7.74412 7.77688 7.88168 8.30710 8.45683 9.26819 9.88725 10.61879 11.41984 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003662 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.822125 B = 7644.647364 C = 8711.553275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.307 3.693 3 N -0.512 5.512 4 C 0.153 3.847 5 C -0.181 4.181 6 C 0.146 3.854 7 C 0.544 3.456 8 O -0.494 6.494 9 N -0.576 5.576 10 C 0.076 3.924 11 C -0.133 4.133 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.136 3.864 15 H 0.063 0.937 16 C 0.165 3.835 17 H 0.071 0.929 18 C -0.122 4.122 19 C -0.150 4.150 20 C 0.175 3.825 21 N -0.596 5.596 22 C -0.219 4.219 23 H 0.077 0.923 24 C -0.005 4.005 25 N -0.913 5.913 26 Si 0.900 3.100 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 N -0.487 5.487 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.060 0.940 37 H 0.136 0.864 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.119 0.881 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.023 0.977 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 17.235 -0.202 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 N -0.227 5.227 4 C -0.014 4.014 5 C -0.204 4.204 6 C -0.001 4.001 7 C 0.329 3.671 8 O -0.369 6.369 9 N -0.308 5.308 10 C -0.047 4.047 11 C -0.172 4.172 12 C -0.162 4.162 13 C -0.166 4.166 14 C 0.033 3.967 15 H 0.081 0.919 16 C 0.058 3.942 17 H 0.088 0.912 18 C -0.159 4.159 19 C -0.188 4.188 20 C 0.050 3.950 21 N -0.321 5.321 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.559 5.559 26 Si 0.731 3.269 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.218 1.218 30 N -0.205 5.205 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.192 0.808 35 H 0.179 0.821 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.137 0.863 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.041 0.959 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.865 16.930 -0.165 21.264 hybrid contribution 0.775 -0.855 -0.719 1.360 sum -12.090 16.074 -0.884 20.133 Atomic orbital electron populations 1.20607 0.85376 1.04430 1.04064 1.23454 0.98433 0.83470 0.90579 1.68194 1.10476 1.30412 1.13660 1.23340 0.89421 0.98678 0.89945 1.22973 1.04022 0.92903 1.00478 1.22163 0.89574 0.95658 0.92717 1.17876 0.86641 0.82536 0.80025 1.90815 1.12849 1.85254 1.48014 1.48186 1.11520 1.05692 1.65387 1.22826 0.80909 1.04763 0.96208 1.21951 1.00384 0.96825 0.98015 1.21650 0.97861 0.95700 1.01015 1.22356 0.93633 1.04021 0.96582 1.22370 0.96060 0.80624 0.97655 0.91909 1.21610 0.87797 0.88321 0.96514 0.91151 1.23031 0.96817 1.00480 0.95582 1.23007 0.97402 0.99880 0.98556 1.21336 0.97745 0.90295 0.85638 1.44731 1.56435 1.20481 1.10486 1.19039 1.39531 0.89792 0.86450 0.90530 1.24932 1.02191 0.96736 0.96402 1.69964 1.50849 1.14187 1.20947 0.86212 0.77357 0.80996 0.82342 1.20367 1.21814 1.21751 1.68373 1.08945 1.28944 1.14276 0.89459 0.89357 0.89499 0.80766 0.82107 0.92214 0.84725 0.92335 0.91705 0.92450 0.92496 0.86326 0.92621 0.89235 0.93933 0.92584 0.93114 0.91968 0.95910 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.31 36.00 0.37 -0.22 16 2 C 0.31 3.22 7.64 -157.30 -1.20 2.02 16 3 N -0.51 -5.36 10.32 -10.74 -0.11 -5.47 16 4 C 0.15 1.39 11.31 -17.20 -0.19 1.20 16 5 C -0.18 -1.98 9.72 -38.91 -0.38 -2.35 16 6 C 0.15 1.95 6.61 -82.63 -0.55 1.40 16 7 C 0.54 8.86 7.23 -12.05 -0.09 8.77 16 8 O -0.49 -9.08 9.21 5.39 0.05 -9.03 16 9 N -0.58 -9.46 2.97 -166.09 -0.49 -9.96 16 10 C 0.08 1.03 5.90 -3.71 -0.02 1.01 16 11 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 12 C -0.12 -1.94 5.88 -26.69 -0.16 -2.10 16 13 C -0.13 -2.49 3.81 -26.61 -0.10 -2.59 16 14 C 0.14 2.65 2.64 -67.60 -0.18 2.47 16 15 H 0.06 1.30 7.86 -51.93 -0.41 0.89 16 16 C 0.16 3.60 2.31 -66.95 -0.15 3.45 16 17 H 0.07 1.68 5.94 -51.61 -0.31 1.37 16 18 C -0.12 -2.45 5.30 -24.90 -0.13 -2.58 16 19 C -0.15 -3.13 7.08 -24.59 -0.17 -3.30 16 20 C 0.17 4.39 5.38 -2.53 -0.01 4.37 16 21 N -0.60 -15.15 3.11 -162.57 -0.51 -15.66 16 22 C -0.22 -5.88 6.87 -15.06 -0.10 -5.99 16 23 H 0.08 2.02 6.39 -52.48 -0.34 1.69 16 24 C -0.01 -0.15 5.46 -17.43 -0.10 -0.25 16 25 N -0.91 -26.51 10.68 55.49 0.59 -25.92 16 26 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 N -0.49 -5.90 6.21 -7.32 -0.05 -5.94 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.16 1.61 7.76 -52.49 -0.41 1.20 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.14 1.70 4.07 -79.34 -0.32 1.38 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.12 2.72 5.52 -51.93 -0.29 2.44 16 43 H 0.06 1.14 7.46 -51.93 -0.39 0.75 16 44 H 0.09 1.76 5.43 -53.14 -0.29 1.47 16 45 H 0.04 0.84 7.66 -51.93 -0.40 0.45 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.72 7.11 -51.93 -0.37 1.35 16 49 H 0.02 0.62 8.00 -51.93 -0.42 0.20 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -30.92 373.92 -10.94 -41.86 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.71 Total: 4.39 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.33 Total: 3.37 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.56 Total: -62.95 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.05 Total: -9.03 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.92 -10.94 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025300796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.784 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds