Wall clock time and date at job start Wed Apr 1 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31911 * 119.03982 * 2 1 4 4 C 1.32175 * 121.03529 * 180.02562 * 3 2 1 5 5 C 1.38796 * 119.14855 * 0.02562 * 4 3 2 6 6 C 1.39499 * 118.26065 * 359.97438 * 5 4 3 7 7 C 1.48458 * 120.54902 * 180.02562 * 6 5 4 8 8 O 1.21477 * 119.99775 * 8.55273 * 7 6 5 9 9 N 1.34772 * 120.00045 * 188.55430 * 7 6 5 10 10 C 1.46927 * 120.62998 * 8.80891 * 9 7 6 11 11 C 1.53198 * 108.77816 * 126.41245 * 10 9 7 12 12 C 1.53039 * 109.31045 * 54.63351 * 11 10 9 13 13 C 1.53039 * 109.53817 * 298.63862 * 12 11 10 14 14 C 1.46930 * 120.63346 * 188.83102 * 9 7 6 15 15 H 1.08998 * 109.58632 * 113.79918 * 14 9 7 16 16 C 1.53003 * 109.58274 * 353.37421 * 14 9 7 17 17 H 1.09001 * 109.87388 * 312.75532 * 16 14 9 18 18 C 1.54321 * 109.88277 * 73.77516 * 16 14 9 19 19 C 1.55148 * 102.94245 * 141.61078 * 18 16 14 20 20 C 1.54906 * 101.58087 * 324.49262 * 19 18 16 21 21 N 1.47024 * 109.87988 * 191.58237 * 16 14 9 22 22 C 1.36931 * 125.65095 * 61.61973 * 21 16 14 23 23 H 1.08005 * 120.00218 * 17.07972 * 22 21 16 24 24 C 1.38812 * 120.00463 * 197.08041 * 22 21 16 25 25 N 1.31622 * 119.99567 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00417 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46942 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47224 * 119.99576 * 26 24 22 29 29 H 1.48501 * 109.46832 * 239.99616 * 26 24 22 30 30 N 1.31552 * 119.04209 * 180.28281 * 2 1 3 31 31 H 1.08998 * 109.47885 * 90.00151 * 1 2 3 32 32 H 1.09007 * 109.47031 * 209.99687 * 1 2 3 33 33 H 1.09003 * 109.47303 * 329.99704 * 1 2 3 34 34 H 1.08003 * 120.42755 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.87275 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.58833 * 246.20142 * 10 9 7 37 37 H 1.08998 * 109.59223 * 6.48129 * 10 9 7 38 38 H 1.09002 * 109.49308 * 294.68426 * 11 10 9 39 39 H 1.08993 * 109.49825 * 174.58421 * 11 10 9 40 40 H 1.09002 * 109.46397 * 178.61733 * 12 11 10 41 41 H 1.09002 * 109.45869 * 58.65618 * 12 11 10 42 42 H 1.09006 * 109.49802 * 181.31456 * 13 12 11 43 43 H 1.08999 * 109.49686 * 301.37726 * 13 12 11 44 44 H 1.09008 * 110.71720 * 259.97028 * 18 16 14 45 45 H 1.08994 * 110.71961 * 23.06221 * 18 16 14 46 46 H 1.09006 * 111.00763 * 82.57079 * 19 18 16 47 47 H 1.09003 * 111.00496 * 206.42380 * 19 18 16 48 48 H 1.09007 * 110.36755 * 155.84882 * 20 19 18 49 49 H 1.08997 * 110.36899 * 278.06438 * 20 19 18 50 50 H 0.96995 * 119.99897 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 -0.0005 5 6 4.1861 0.0114 -0.0016 6 6 3.4761 -1.1894 -0.0015 7 6 4.1925 -2.4896 -0.0021 8 8 5.3969 -2.5195 0.1539 9 7 3.5068 -3.6368 -0.1757 10 6 2.0878 -3.6105 -0.5559 11 6 1.8967 -4.4724 -1.8079 12 6 2.4516 -5.8746 -1.5467 13 6 3.9495 -5.7844 -1.2462 14 6 4.1638 -4.9375 0.0122 15 1 3.7291 -5.4456 0.8730 16 6 5.6621 -4.7271 0.2399 17 1 6.0564 -4.0351 -0.5043 18 6 5.9041 -4.1673 1.6575 19 6 7.1977 -4.8983 2.1036 20 6 7.0093 -6.2904 1.4507 21 7 6.3667 -6.0146 0.1528 22 6 6.4173 -6.8237 -0.9507 23 1 6.1603 -6.4284 -1.9224 24 6 6.7987 -8.1520 -0.8206 25 7 7.1123 -8.6337 0.3635 26 14 6.8684 -9.2556 -2.3261 27 1 6.4721 -8.4788 -3.5281 28 1 8.2512 -9.7678 -2.5010 29 1 5.9366 -10.3978 -2.1461 30 7 2.1456 -1.1501 -0.0057 31 1 -0.3635 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 3.9825 2.1491 -0.0009 35 1 5.2660 0.0165 -0.0024 36 1 1.4838 -4.0104 0.2586 37 1 1.7847 -2.5849 -0.7661 38 1 2.4289 -4.0207 -2.6452 39 1 0.8350 -4.5397 -2.0447 40 1 2.2948 -6.4972 -2.4275 41 1 1.9361 -6.3160 -0.6937 42 1 4.3487 -6.7856 -1.0832 43 1 4.4624 -5.3210 -2.0890 44 1 6.0621 -3.0893 1.6246 45 1 5.0717 -4.4137 2.3166 46 1 8.0838 -4.3993 1.7110 47 1 7.2459 -4.9795 3.1896 48 1 7.9751 -6.7730 1.3008 49 1 6.3656 -6.9156 2.0693 50 1 7.3792 -9.5617 0.4544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025300796.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:37 Heat of formation + Delta-G solvation = 75.320654 kcal Electronic energy + Delta-G solvation = -32350.387362 eV Core-core repulsion = 28379.836872 eV Total energy + Delta-G solvation = -3970.550491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56762 -41.41490 -38.85968 -38.23513 -35.26238 -34.60139 -34.19910 -33.54120 -32.64152 -30.96072 -29.44342 -28.81243 -27.01949 -26.56008 -25.34681 -24.46558 -23.49684 -22.38748 -21.63302 -21.07289 -20.68266 -19.06849 -18.58916 -17.93526 -17.19921 -16.96803 -16.88707 -16.56206 -16.21104 -15.83627 -15.69833 -15.58566 -15.25891 -14.88755 -14.63511 -14.30747 -14.10798 -14.02092 -13.86555 -13.63957 -13.46531 -13.36416 -13.17475 -13.07751 -12.79950 -12.72887 -12.46182 -12.37437 -12.01058 -11.97013 -11.93202 -11.82169 -11.73902 -11.45496 -11.40448 -11.21892 -10.93935 -10.64506 -10.52509 -10.43288 -9.81174 -9.41384 -8.65207 -7.81833 -5.16785 -0.56660 -0.11344 1.44323 1.45345 1.55062 1.68011 1.83937 2.51553 2.67735 2.77280 3.05333 3.30940 3.43025 3.75391 3.76518 3.90790 4.00849 4.06609 4.09029 4.14122 4.23714 4.31128 4.39373 4.43805 4.46663 4.52866 4.63263 4.70115 4.78833 4.83734 4.85842 4.92050 4.95948 5.02208 5.05820 5.08976 5.13429 5.21761 5.27335 5.31500 5.41107 5.47744 5.53946 5.58259 5.64559 5.71596 5.77787 5.78419 5.89812 6.26750 6.46437 6.89666 7.09664 7.16952 7.83334 8.54261 9.30088 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003662 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.822125 B = 7644.647364 C = 8711.553275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.519 5.519 4 C 0.167 3.833 5 C -0.182 4.182 6 C 0.126 3.874 7 C 0.541 3.459 8 O -0.524 6.524 9 N -0.579 5.579 10 C 0.075 3.925 11 C -0.125 4.125 12 C -0.120 4.120 13 C -0.120 4.120 14 C 0.147 3.853 15 H 0.048 0.952 16 C 0.165 3.835 17 H 0.054 0.946 18 C -0.109 4.109 19 C -0.137 4.137 20 C 0.182 3.818 21 N -0.614 5.614 22 C -0.213 4.213 23 H 0.076 0.924 24 C -0.061 4.061 25 N -0.947 5.947 26 Si 0.962 3.038 27 H -0.266 1.266 28 H -0.296 1.296 29 H -0.291 1.291 30 N -0.497 5.497 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.215 0.785 35 H 0.167 0.833 36 H 0.067 0.933 37 H 0.153 0.847 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.038 0.962 44 H 0.102 0.898 45 H 0.044 0.956 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.028 0.972 49 H -0.004 1.004 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.043 20.119 -0.859 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.234 5.234 4 C -0.001 4.001 5 C -0.204 4.204 6 C -0.020 4.020 7 C 0.328 3.672 8 O -0.401 6.401 9 N -0.311 5.311 10 C -0.046 4.046 11 C -0.163 4.163 12 C -0.158 4.158 13 C -0.158 4.158 14 C 0.043 3.957 15 H 0.066 0.934 16 C 0.059 3.941 17 H 0.071 0.929 18 C -0.146 4.146 19 C -0.176 4.176 20 C 0.057 3.943 21 N -0.339 5.339 22 C -0.343 4.343 23 H 0.094 0.906 24 C -0.254 4.254 25 N -0.596 5.596 26 Si 0.791 3.209 27 H -0.191 1.191 28 H -0.223 1.223 29 H -0.218 1.218 30 N -0.216 5.216 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.232 0.768 35 H 0.184 0.816 36 H 0.085 0.915 37 H 0.169 0.831 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.120 0.880 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.047 0.953 49 H 0.014 0.986 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.347 19.852 -0.839 25.106 hybrid contribution 1.486 -1.585 -0.519 2.234 sum -13.860 18.267 -1.359 22.970 Atomic orbital electron populations 1.20755 0.82923 1.05365 1.05285 1.24115 0.99863 0.82928 0.89494 1.68330 1.11066 1.30289 1.13674 1.23976 0.89017 0.99459 0.87627 1.23124 1.04430 0.92717 1.00169 1.21692 0.90432 0.94551 0.95333 1.18310 0.86542 0.83472 0.78832 1.90761 1.14127 1.85944 1.49301 1.48158 1.12679 1.04561 1.65665 1.23072 0.79014 1.06000 0.96529 1.21921 1.02225 0.94645 0.97552 1.21600 0.94796 0.97836 1.01522 1.22095 0.96449 1.01385 0.95904 1.21843 0.94496 0.82344 0.97050 0.93358 1.21609 0.89131 0.86152 0.97182 0.92886 1.22955 0.96332 1.01012 0.94313 1.22900 0.97931 0.96953 0.99778 1.21109 0.95332 0.92163 0.85744 1.44993 1.57467 1.21263 1.10198 1.19230 1.37970 0.90084 0.86977 0.90611 1.25617 1.02887 0.98025 0.98890 1.70151 1.52656 1.13959 1.22799 0.85238 0.76736 0.79123 0.79777 1.19060 1.22312 1.21791 1.68206 1.08264 1.30007 1.15092 0.87935 0.88645 0.88345 0.76834 0.81589 0.91507 0.83129 0.92957 0.88219 0.91625 0.92121 0.90261 0.94289 0.88003 0.93693 0.92338 0.90569 0.95320 0.98603 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 10.31 71.23 0.73 -0.13 16 2 C 0.30 5.40 7.64 138.79 1.06 6.46 16 3 N -0.52 -9.07 10.32 -187.88 -1.94 -11.01 16 4 C 0.17 2.45 11.31 84.77 0.96 3.41 16 5 C -0.18 -3.56 9.72 22.71 0.22 -3.34 16 6 C 0.13 3.15 6.61 41.98 0.28 3.43 16 7 C 0.54 17.34 7.23 86.97 0.63 17.96 16 8 O -0.52 -19.29 9.21 -3.64 -0.03 -19.33 16 9 N -0.58 -18.76 2.97 -797.70 -2.37 -21.13 16 10 C 0.08 1.90 5.90 86.36 0.51 2.41 16 11 C -0.13 -3.03 6.08 30.67 0.19 -2.84 16 12 C -0.12 -3.63 5.88 30.62 0.18 -3.45 16 13 C -0.12 -4.80 3.81 30.67 0.12 -4.68 16 14 C 0.15 5.85 2.64 44.97 0.12 5.97 16 15 H 0.05 2.06 7.86 -2.39 -0.02 2.04 16 16 C 0.17 7.44 2.31 45.34 0.10 7.55 16 17 H 0.05 2.62 5.94 -5.05 -0.03 2.59 16 18 C -0.11 -4.41 5.30 31.78 0.17 -4.24 16 19 C -0.14 -5.78 7.08 31.98 0.23 -5.55 16 20 C 0.18 9.56 5.38 86.85 0.47 10.03 16 21 N -0.61 -32.61 3.11 -668.26 -2.08 -34.68 16 22 C -0.21 -11.92 6.87 84.03 0.58 -11.35 16 23 H 0.08 4.16 6.39 -2.91 -0.02 4.14 16 24 C -0.06 -3.49 5.46 84.86 0.46 -3.02 16 25 N -0.95 -57.69 10.68 21.65 0.23 -57.46 16 26 Si 0.96 46.24 29.55 68.60 2.03 48.27 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 30 N -0.50 -10.83 6.21 -177.08 -1.10 -11.93 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.22 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.17 3.03 7.76 -2.91 -0.02 3.00 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.15 3.42 4.07 -56.51 -0.23 3.19 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 3.81 5.52 -2.38 -0.01 3.79 16 43 H 0.04 1.64 7.46 -2.39 -0.02 1.62 16 44 H 0.10 3.96 5.43 -29.33 -0.16 3.81 16 45 H 0.04 1.78 7.66 -2.39 -0.02 1.76 16 46 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 47 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.03 1.67 7.11 -2.38 -0.02 1.65 16 49 H 0.00 -0.23 8.00 -2.39 -0.02 -0.25 16 50 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -70.88 373.92 2.31 -68.58 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.57 Total: 20.08 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 7.00 Total: 18.61 kcal Atomic # 7 Polarization: -128.95 SS G_CDS: -7.25 Total: -136.21 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.03 Total: -19.33 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.88 2.31 -68.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025300796.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.896 kcal (2) G-P(sol) polarization free energy of solvation -70.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds