Wall clock time and date at job start Wed Apr 1 2020 03:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47518 * 2 1 4 4 N 1.31927 * 120.17264 * 263.89686 * 3 2 1 5 5 N 1.28268 * 122.32595 * 180.02562 * 4 3 2 6 6 C 1.31910 * 122.51980 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.01735 * 180.02562 * 6 5 4 8 8 C 1.38507 * 119.97070 * 359.97438 * 6 5 4 9 9 C 1.39723 * 120.17357 * 83.91183 * 3 2 1 10 10 C 1.48128 * 121.14667 * 359.71196 * 9 3 2 11 11 O 1.21521 * 120.00146 * 41.85885 * 10 9 3 12 12 N 1.34780 * 120.00050 * 221.86332 * 10 9 3 13 13 C 1.49619 * 126.07390 * 5.08376 * 12 10 9 14 14 C 1.51758 * 102.38387 * 154.30020 * 13 12 10 15 15 H 1.08995 * 111.74333 * 288.25403 * 14 13 12 16 16 C 1.51564 * 123.23623 * 151.77171 * 14 13 12 17 17 C 1.56339 * 101.81170 * 208.17432 * 16 14 13 18 18 C 1.56001 * 105.77110 * 25.44297 * 17 16 14 19 19 H 1.09006 * 110.52091 * 248.33704 * 18 17 16 20 20 N 1.46496 * 110.64646 * 125.64477 * 18 17 16 21 21 C 1.36937 * 120.00203 * 90.36186 * 20 18 17 22 22 H 1.08002 * 119.99680 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00180 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00064 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99889 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47027 * 89.99879 * 25 23 21 27 27 H 1.48502 * 109.47447 * 209.99728 * 25 23 21 28 28 H 1.48500 * 109.47491 * 330.00189 * 25 23 21 29 29 C 1.49708 * 103.98462 * 6.95627 * 18 17 16 30 30 H 1.08999 * 108.54187 * 76.80851 * 29 18 17 31 31 C 1.49291 * 126.07362 * 185.39255 * 12 10 9 32 32 H 1.09004 * 109.46808 * 300.00636 * 1 2 3 33 33 H 1.09005 * 109.46609 * 60.00163 * 1 2 3 34 34 H 1.08995 * 109.47288 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46808 * 239.99364 * 2 1 3 36 36 H 1.09005 * 109.46609 * 119.99837 * 2 1 3 37 37 H 1.08996 * 109.47571 * 89.99888 * 7 6 5 38 38 H 1.09008 * 109.47182 * 209.99716 * 7 6 5 39 39 H 1.08998 * 109.47236 * 329.99057 * 7 6 5 40 40 H 1.07996 * 121.09098 * 180.02562 * 8 6 5 41 41 H 1.08997 * 110.80819 * 272.63731 * 13 12 10 42 42 H 1.09001 * 110.80286 * 36.13776 * 13 12 10 43 43 H 1.09001 * 110.95452 * 90.04766 * 16 14 13 44 44 H 1.08994 * 110.96284 * 326.30876 * 16 14 13 45 45 H 1.09001 * 110.18721 * 266.36345 * 17 16 14 46 46 H 1.09001 * 110.18612 * 144.51750 * 17 16 14 47 47 H 0.96998 * 119.99838 * 270.36656 * 20 18 17 48 48 H 0.97002 * 120.00063 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.39946 * 292.38006 * 31 12 10 50 50 H 1.09002 * 110.39021 * 54.77927 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3679 2.0055 -1.1341 5 7 2.8005 3.2120 -1.1819 6 6 2.9429 3.9576 -0.1031 7 6 3.4559 5.3694 -0.2248 8 6 2.6198 3.4428 1.1414 9 6 2.1458 2.1256 1.2011 10 6 1.7729 1.5034 2.4926 11 8 2.0835 0.3517 2.7244 12 7 1.0890 2.2147 3.4107 13 6 0.5469 3.5974 3.2290 14 6 -0.6086 3.6258 4.2124 15 1 -1.4431 3.0124 3.8727 16 6 -1.0997 4.8944 4.8807 17 6 -1.6835 4.3439 6.2225 18 6 -0.9233 3.0102 6.5001 19 1 -1.5968 2.1588 6.4014 20 7 -0.3147 3.0303 7.8326 21 6 -1.0160 2.5648 8.9127 22 1 -2.0176 2.1825 8.7822 23 6 -0.4391 2.5834 10.1752 24 7 -1.1130 2.1355 11.2133 25 14 1.2935 3.2439 10.4007 26 1 1.2353 4.7017 10.6780 27 1 1.9439 2.5489 11.5405 28 1 2.0789 3.0066 9.1629 29 6 0.1337 2.9690 5.4408 30 1 0.9338 3.6534 5.7226 31 6 0.7434 1.7655 4.7918 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5140 -0.8900 36 1 1.8933 -0.5138 0.8901 37 1 2.6162 6.0506 -0.3624 38 1 3.9972 5.6387 0.6822 39 1 4.1255 5.4401 -1.0819 40 1 2.7289 4.0373 2.0364 41 1 1.2970 4.3445 3.4880 42 1 0.1904 3.7425 2.2092 43 1 -1.8766 5.3733 4.2848 44 1 -0.2744 5.5814 5.0673 45 1 -2.7516 4.1534 6.1179 46 1 -1.5046 5.0540 7.0299 47 1 0.5850 3.3734 7.9497 48 1 -0.7097 2.1481 12.0954 49 1 0.0238 0.9475 4.7564 50 1 1.6419 1.4592 5.3276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026297223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:49 Heat of formation + Delta-G solvation = 51.063897 kcal Electronic energy + Delta-G solvation = -30756.458318 eV Core-core repulsion = 26784.855975 eV Total energy + Delta-G solvation = -3971.602343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80743 -40.63846 -38.90663 -35.86458 -35.29644 -34.11160 -33.55211 -32.05099 -31.28341 -29.81710 -28.93344 -28.35186 -25.96919 -25.66931 -24.69832 -23.19998 -22.60235 -22.23113 -20.52206 -19.90308 -19.40920 -18.12964 -17.78806 -17.24563 -16.75152 -16.36900 -15.63644 -15.52231 -15.19204 -14.91033 -14.48167 -14.40297 -14.31492 -13.92189 -13.71787 -13.71144 -13.51941 -13.12392 -12.85306 -12.83180 -12.66977 -12.66193 -12.20944 -12.11580 -12.05328 -11.72536 -11.47882 -11.26497 -11.15447 -10.99017 -10.91204 -10.71030 -10.59204 -10.53622 -10.47525 -10.15716 -9.96275 -9.86574 -9.76711 -9.64766 -9.02047 -8.95790 -7.37397 -5.84502 -3.21294 0.03022 0.44144 2.29444 2.44473 3.11130 3.30641 3.32710 3.39774 3.50523 3.71947 3.91262 3.94948 4.09832 4.31604 4.51451 4.58428 4.59645 4.75705 4.83203 4.91952 4.98410 5.03069 5.04972 5.07669 5.12170 5.15345 5.23397 5.33840 5.41452 5.45251 5.47862 5.50685 5.55793 5.64805 5.66764 5.72340 5.75782 5.80051 5.87690 5.89229 5.93378 6.00783 6.05608 6.10921 6.22692 6.38635 6.59592 6.81795 7.11840 7.72276 7.90643 8.30465 8.34329 9.11521 9.83909 10.02379 11.33631 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002729 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.561281 B =10256.860080 C =10653.520671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C 0.116 3.884 4 N -0.237 5.237 5 N -0.229 5.229 6 C 0.060 3.940 7 C -0.100 4.100 8 C -0.084 4.084 9 C -0.115 4.115 10 C 0.579 3.421 11 O -0.518 6.518 12 N -0.615 5.615 13 C 0.113 3.887 14 C -0.126 4.126 15 H 0.091 0.909 16 C -0.101 4.101 17 C -0.143 4.143 18 C 0.205 3.795 19 H 0.066 0.934 20 N -0.744 5.744 21 C -0.247 4.247 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 C -0.125 4.125 30 H 0.073 0.927 31 C 0.134 3.866 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.361 0.639 48 H 0.260 0.740 49 H 0.078 0.922 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 6.089 -23.814 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.029 4.029 4 N -0.078 5.078 5 N -0.072 5.072 6 C -0.084 4.084 7 C -0.159 4.159 8 C -0.114 4.114 9 C -0.130 4.130 10 C 0.365 3.635 11 O -0.394 6.394 12 N -0.349 5.349 13 C -0.009 4.009 14 C -0.145 4.145 15 H 0.110 0.890 16 C -0.139 4.139 17 C -0.183 4.183 18 C 0.094 3.906 19 H 0.084 0.916 20 N -0.385 5.385 21 C -0.377 4.377 22 H 0.109 0.891 23 C -0.189 4.189 24 N -0.579 5.579 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.145 4.145 30 H 0.092 0.908 31 C 0.014 3.986 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.173 0.827 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.194 0.806 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.420 5.171 -25.204 26.293 hybrid contribution 1.184 0.755 1.929 2.386 sum 6.604 5.926 -23.275 24.909 Atomic orbital electron populations 1.21669 0.93536 1.02847 1.01831 1.20802 0.96940 0.89175 1.05953 1.23037 0.92935 0.98397 0.88556 1.73055 1.07868 1.03161 1.23738 1.72825 1.07825 0.99519 1.26987 1.22869 0.96622 0.98972 0.89956 1.20705 1.02044 0.88849 1.04271 1.22593 0.95044 0.93908 0.99847 1.21048 1.01385 0.94995 0.95554 1.17499 0.78383 0.85309 0.82312 1.90777 1.54488 1.16013 1.78152 1.49794 1.54061 1.16727 1.14306 1.21980 0.95771 0.83173 0.99952 1.22642 0.96939 0.99954 0.94992 0.89035 1.21888 1.00263 0.95024 0.96756 1.23754 0.99730 0.99313 0.95544 1.19899 0.91692 0.95699 0.83306 0.91632 1.42842 1.16016 1.76406 1.03270 1.19070 0.99121 1.34302 0.85177 0.89100 1.24676 0.97740 1.00961 0.95548 1.69694 1.37214 1.51982 0.98995 0.86577 0.85951 0.78844 0.77267 1.21094 1.21696 1.20397 1.22173 0.99415 0.96693 0.96203 0.90826 1.21064 1.00740 0.97151 0.79639 0.92879 0.92428 0.91121 0.89268 0.86967 0.89525 0.90056 0.89670 0.82678 0.90576 0.90633 0.91824 0.91531 0.92045 0.90619 0.80567 0.92973 0.90417 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.09 -0.95 5.73 -27.88 -0.16 -1.11 16 3 C 0.12 1.36 6.16 -82.00 -0.50 0.86 16 4 N -0.24 -3.00 11.42 33.81 0.39 -2.62 16 5 N -0.23 -2.70 11.41 33.57 0.38 -2.31 16 6 C 0.06 0.54 6.86 -82.46 -0.57 -0.02 16 7 C -0.10 -0.53 10.19 36.01 0.37 -0.16 16 8 C -0.08 -0.75 8.17 -38.78 -0.32 -1.06 16 9 C -0.12 -1.29 5.34 -104.58 -0.56 -1.85 16 10 C 0.58 7.40 6.95 -12.20 -0.08 7.31 16 11 O -0.52 -8.15 14.94 5.35 0.08 -8.07 16 12 N -0.61 -7.10 3.42 -172.44 -0.59 -7.69 16 13 C 0.11 1.00 5.07 -2.94 -0.01 0.98 16 14 C -0.13 -1.28 3.15 -89.33 -0.28 -1.56 16 15 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.10 -1.04 6.59 -25.66 -0.17 -1.21 16 17 C -0.14 -2.03 6.74 -23.33 -0.16 -2.19 16 18 C 0.20 3.40 3.44 -67.96 -0.23 3.17 16 19 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 20 N -0.74 -16.03 4.91 -53.45 -0.26 -16.29 16 21 C -0.25 -6.56 10.44 -15.06 -0.16 -6.72 16 22 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 25 Si 0.88 21.27 27.74 -169.99 -4.71 16.55 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 29 C -0.12 -1.65 2.22 -91.23 -0.20 -1.85 16 30 H 0.07 0.99 7.72 -51.93 -0.40 0.59 16 31 C 0.13 1.79 6.83 -4.12 -0.03 1.76 16 32 H 0.05 0.54 7.91 -51.93 -0.41 0.13 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 1.35 5.64 -51.93 -0.29 1.05 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.29 8.09 -51.92 -0.42 -0.13 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.16 1.00 6.58 -52.49 -0.35 0.65 16 41 H 0.08 0.56 7.35 -51.93 -0.38 0.18 16 42 H 0.08 0.59 7.49 -51.93 -0.39 0.20 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.23 7.98 -51.93 -0.41 0.82 16 47 H 0.36 7.71 5.54 -40.82 -0.23 7.49 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -32.53 396.16 -8.71 -41.24 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.94 Total: 5.40 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.80 Total: -4.52 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.69 Total: -56.57 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.53 -8.71 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.308 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds