Wall clock time and date at job start Wed Apr 1 2020 03:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47518 * 2 1 4 4 N 1.31927 * 120.17264 * 263.89686 * 3 2 1 5 5 N 1.28268 * 122.32595 * 180.02562 * 4 3 2 6 6 C 1.31910 * 122.51980 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.01735 * 180.02562 * 6 5 4 8 8 C 1.38507 * 119.97070 * 359.97438 * 6 5 4 9 9 C 1.39723 * 120.17357 * 83.91183 * 3 2 1 10 10 C 1.48128 * 121.14667 * 359.71196 * 9 3 2 11 11 O 1.21521 * 120.00146 * 41.85885 * 10 9 3 12 12 N 1.34780 * 120.00050 * 221.86332 * 10 9 3 13 13 C 1.49619 * 126.07390 * 5.08376 * 12 10 9 14 14 C 1.51758 * 102.38387 * 154.30020 * 13 12 10 15 15 H 1.08995 * 111.74333 * 288.25403 * 14 13 12 16 16 C 1.51564 * 123.23623 * 151.77171 * 14 13 12 17 17 C 1.56339 * 101.81170 * 208.17432 * 16 14 13 18 18 C 1.56001 * 105.77110 * 25.44297 * 17 16 14 19 19 H 1.09006 * 110.52091 * 248.33704 * 18 17 16 20 20 N 1.46496 * 110.64646 * 125.64477 * 18 17 16 21 21 C 1.36937 * 120.00203 * 90.36186 * 20 18 17 22 22 H 1.08002 * 119.99680 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00180 * 179.97438 * 21 20 18 24 24 N 1.31616 * 120.00064 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99889 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47027 * 89.99879 * 25 23 21 27 27 H 1.48502 * 109.47447 * 209.99728 * 25 23 21 28 28 H 1.48500 * 109.47491 * 330.00189 * 25 23 21 29 29 C 1.49708 * 103.98462 * 6.95627 * 18 17 16 30 30 H 1.08999 * 108.54187 * 76.80851 * 29 18 17 31 31 C 1.49291 * 126.07362 * 185.39255 * 12 10 9 32 32 H 1.09004 * 109.46808 * 300.00636 * 1 2 3 33 33 H 1.09005 * 109.46609 * 60.00163 * 1 2 3 34 34 H 1.08995 * 109.47288 * 180.02562 * 1 2 3 35 35 H 1.09004 * 109.46808 * 239.99364 * 2 1 3 36 36 H 1.09005 * 109.46609 * 119.99837 * 2 1 3 37 37 H 1.08996 * 109.47571 * 89.99888 * 7 6 5 38 38 H 1.09008 * 109.47182 * 209.99716 * 7 6 5 39 39 H 1.08998 * 109.47236 * 329.99057 * 7 6 5 40 40 H 1.07996 * 121.09098 * 180.02562 * 8 6 5 41 41 H 1.08997 * 110.80819 * 272.63731 * 13 12 10 42 42 H 1.09001 * 110.80286 * 36.13776 * 13 12 10 43 43 H 1.09001 * 110.95452 * 90.04766 * 16 14 13 44 44 H 1.08994 * 110.96284 * 326.30876 * 16 14 13 45 45 H 1.09001 * 110.18721 * 266.36345 * 17 16 14 46 46 H 1.09001 * 110.18612 * 144.51750 * 17 16 14 47 47 H 0.96998 * 119.99838 * 270.36656 * 20 18 17 48 48 H 0.97002 * 120.00063 * 179.97438 * 24 23 21 49 49 H 1.08999 * 110.39946 * 292.38006 * 31 12 10 50 50 H 1.09002 * 110.39021 * 54.77927 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.3679 2.0055 -1.1341 5 7 2.8005 3.2120 -1.1819 6 6 2.9429 3.9576 -0.1031 7 6 3.4559 5.3694 -0.2248 8 6 2.6198 3.4428 1.1414 9 6 2.1458 2.1256 1.2011 10 6 1.7729 1.5034 2.4926 11 8 2.0835 0.3517 2.7244 12 7 1.0890 2.2147 3.4107 13 6 0.5469 3.5974 3.2290 14 6 -0.6086 3.6258 4.2124 15 1 -1.4431 3.0124 3.8727 16 6 -1.0997 4.8944 4.8807 17 6 -1.6835 4.3439 6.2225 18 6 -0.9233 3.0102 6.5001 19 1 -1.5968 2.1588 6.4014 20 7 -0.3147 3.0303 7.8326 21 6 -1.0160 2.5648 8.9127 22 1 -2.0176 2.1825 8.7822 23 6 -0.4391 2.5834 10.1752 24 7 -1.1130 2.1355 11.2133 25 14 1.2935 3.2439 10.4007 26 1 1.2353 4.7017 10.6780 27 1 1.9439 2.5489 11.5405 28 1 2.0789 3.0066 9.1629 29 6 0.1337 2.9690 5.4408 30 1 0.9338 3.6534 5.7226 31 6 0.7434 1.7655 4.7918 32 1 -0.3633 0.5140 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5140 -0.8900 36 1 1.8933 -0.5138 0.8901 37 1 2.6162 6.0506 -0.3624 38 1 3.9972 5.6387 0.6822 39 1 4.1255 5.4401 -1.0819 40 1 2.7289 4.0373 2.0364 41 1 1.2970 4.3445 3.4880 42 1 0.1904 3.7425 2.2092 43 1 -1.8766 5.3733 4.2848 44 1 -0.2744 5.5814 5.0673 45 1 -2.7516 4.1534 6.1179 46 1 -1.5046 5.0540 7.0299 47 1 0.5850 3.3734 7.9497 48 1 -0.7097 2.1481 12.0954 49 1 0.0238 0.9475 4.7564 50 1 1.6419 1.4592 5.3276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026297223.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:48 Heat of formation + Delta-G solvation = 29.942417 kcal Electronic energy + Delta-G solvation = -30757.374214 eV Core-core repulsion = 26784.855975 eV Total energy + Delta-G solvation = -3972.518239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.62722 -41.60563 -39.93720 -37.06820 -36.16065 -35.26154 -34.74369 -33.09609 -32.78356 -30.87912 -30.07138 -28.96933 -27.23221 -26.52155 -25.50294 -24.57665 -23.91964 -23.03241 -21.56077 -20.81564 -20.63432 -19.55435 -18.92642 -18.23184 -17.81352 -17.11746 -16.73743 -16.46753 -16.34756 -16.02238 -15.96697 -15.31780 -15.05760 -15.00520 -14.73657 -14.61979 -14.51131 -14.29578 -14.10239 -13.81533 -13.49249 -13.32434 -13.25780 -13.21383 -13.11054 -12.86865 -12.65417 -12.40151 -12.34681 -12.22638 -12.09151 -11.91387 -11.84356 -11.63991 -11.49156 -11.43712 -11.31593 -11.05062 -10.94813 -10.65253 -10.58196 -9.91301 -9.29334 -8.00970 -5.34024 -0.76096 -0.28536 1.36046 1.37591 1.41511 1.48676 1.51375 2.32771 2.49335 2.78414 2.84421 3.05905 3.19304 3.31511 3.38140 3.48312 3.64369 3.84313 3.87859 3.92645 4.10143 4.15151 4.21930 4.25781 4.26982 4.36466 4.40712 4.44889 4.50110 4.59393 4.63566 4.66098 4.74876 4.78817 4.83074 4.85725 4.90362 4.91254 4.94556 4.97745 5.10017 5.13652 5.19535 5.23593 5.30129 5.33110 5.50727 5.53859 5.80386 6.20006 6.23641 6.76854 7.09832 7.52992 7.86155 8.04307 9.20795 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.002729 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.561281 B =10256.860080 C =10653.520671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C 0.105 3.895 4 N -0.261 5.261 5 N -0.256 5.256 6 C 0.066 3.934 7 C -0.100 4.100 8 C -0.068 4.068 9 C -0.128 4.128 10 C 0.580 3.420 11 O -0.557 6.557 12 N -0.610 5.610 13 C 0.114 3.886 14 C -0.106 4.106 15 H 0.088 0.912 16 C -0.084 4.084 17 C -0.140 4.140 18 C 0.194 3.806 19 H 0.044 0.956 20 N -0.747 5.747 21 C -0.225 4.225 22 H 0.056 0.944 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.954 3.046 26 H -0.276 1.276 27 H -0.302 1.302 28 H -0.251 1.251 29 C -0.127 4.127 30 H 0.083 0.917 31 C 0.136 3.864 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.188 0.812 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.366 0.634 48 H 0.256 0.744 49 H 0.063 0.937 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.807 9.398 -26.157 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.041 4.041 4 N -0.101 5.101 5 N -0.097 5.097 6 C -0.079 4.079 7 C -0.158 4.158 8 C -0.097 4.097 9 C -0.142 4.142 10 C 0.368 3.632 11 O -0.436 6.436 12 N -0.343 5.343 13 C -0.006 4.006 14 C -0.126 4.126 15 H 0.106 0.894 16 C -0.122 4.122 17 C -0.180 4.180 18 C 0.085 3.915 19 H 0.062 0.938 20 N -0.390 5.390 21 C -0.357 4.357 22 H 0.074 0.926 23 C -0.258 4.258 24 N -0.637 5.637 25 Si 0.781 3.219 26 H -0.202 1.202 27 H -0.229 1.229 28 H -0.175 1.175 29 C -0.147 4.147 30 H 0.101 0.899 31 C 0.015 3.985 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.205 0.795 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.199 0.801 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.997 8.523 -27.646 29.764 hybrid contribution 0.584 -0.296 2.608 2.689 sum 7.581 8.227 -25.038 27.424 Atomic orbital electron populations 1.21620 0.92747 1.03421 1.01437 1.20759 0.97618 0.89060 1.05321 1.23117 0.93365 0.98713 0.88856 1.73011 1.08915 1.04000 1.24224 1.72757 1.08747 0.99583 1.28661 1.23467 0.95132 1.00137 0.89189 1.20887 1.02831 0.86504 1.05546 1.22942 0.92989 0.92814 1.00988 1.20929 1.02838 0.96195 0.94236 1.17725 0.77899 0.84849 0.82763 1.90763 1.56089 1.17811 1.78949 1.49745 1.53566 1.17821 1.13139 1.22233 0.95729 0.81992 1.00667 1.22597 0.97066 0.99338 0.93574 0.89377 1.21800 1.01373 0.94998 0.94067 1.23577 0.99587 0.97178 0.97671 1.20143 0.92813 0.96463 0.82091 0.93792 1.42834 1.16031 1.76280 1.03848 1.19022 0.97858 1.32061 0.86712 0.92644 1.25498 1.02443 1.02523 0.95288 1.69887 1.39492 1.54861 0.99484 0.85426 0.80679 0.78104 0.77642 1.20213 1.22920 1.17547 1.21913 0.99120 0.97170 0.96456 0.89864 1.20883 0.99757 0.97002 0.80848 0.93921 0.91945 0.90141 0.88674 0.88693 0.87659 0.87577 0.89791 0.79483 0.87491 0.88567 0.89264 0.89729 0.92178 0.92540 0.80067 0.93495 0.91906 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.90 71.98 0.71 -1.77 16 2 C -0.09 -1.89 5.73 29.85 0.17 -1.72 16 3 C 0.11 2.40 6.16 42.90 0.26 2.66 16 4 N -0.26 -6.37 11.42 -46.95 -0.54 -6.91 16 5 N -0.26 -5.54 11.41 -47.70 -0.54 -6.08 16 6 C 0.07 0.95 6.86 42.61 0.29 1.25 16 7 C -0.10 -0.58 10.19 71.24 0.73 0.14 16 8 C -0.07 -0.93 8.17 22.79 0.19 -0.75 16 9 C -0.13 -2.60 5.34 -19.84 -0.11 -2.71 16 10 C 0.58 14.05 6.95 86.87 0.60 14.65 16 11 O -0.56 -17.68 14.94 -3.78 -0.06 -17.74 16 12 N -0.61 -12.62 3.42 -817.76 -2.80 -15.42 16 13 C 0.11 1.47 5.07 85.36 0.43 1.90 16 14 C -0.11 -1.77 3.15 -9.96 -0.03 -1.80 16 15 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 16 C -0.08 -1.36 6.59 31.29 0.21 -1.15 16 17 C -0.14 -3.74 6.74 32.80 0.22 -3.52 16 18 C 0.19 6.33 3.44 44.98 0.15 6.48 16 19 H 0.04 1.61 8.09 -2.38 -0.02 1.59 16 20 N -0.75 -31.96 4.91 -323.01 -1.59 -33.55 16 21 C -0.23 -12.30 10.44 84.03 0.88 -11.42 16 22 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 23 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 24 N -0.99 -62.51 13.97 21.65 0.30 -62.21 16 25 Si 0.95 44.11 27.74 68.60 1.90 46.01 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 28 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 29 C -0.13 -3.08 2.22 -11.19 -0.02 -3.11 16 30 H 0.08 1.93 7.72 -2.39 -0.02 1.91 16 31 C 0.14 3.50 6.83 84.78 0.58 4.08 16 32 H 0.04 0.86 7.91 -2.38 -0.02 0.84 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.09 2.37 5.64 -2.38 -0.01 2.36 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 0.14 8.09 -2.38 -0.02 0.12 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.19 1.27 6.58 -2.91 -0.02 1.25 16 41 H 0.11 0.83 7.35 -2.39 -0.02 0.81 16 42 H 0.10 0.96 7.49 -2.39 -0.02 0.94 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.06 1.75 7.98 -2.39 -0.02 1.73 16 47 H 0.37 14.96 5.54 -92.71 -0.51 14.45 16 48 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 49 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -75.89 396.16 2.79 -73.09 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.38 Total: 22.93 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.73 Total: -0.13 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.16 Total: -124.16 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.06 Total: -17.74 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Total: -75.89 2.79 -73.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297223.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.037 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds