Wall clock time and date at job start Wed Apr 1 2020 03:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46820 * 2 1 4 4 C 1.50697 * 109.47134 * 119.99441 * 2 1 3 5 5 N 1.32164 * 120.53766 * 305.42673 * 4 2 1 6 6 C 1.31860 * 120.96548 * 180.02562 * 5 4 2 7 7 N 1.31882 * 122.09918 * 359.97438 * 6 5 4 8 8 C 1.32142 * 120.96343 * 359.71190 * 7 6 5 9 9 C 1.39927 * 120.53741 * 125.44336 * 4 2 1 10 10 C 1.47828 * 120.93835 * 359.97438 * 9 4 2 11 11 O 1.21551 * 120.00341 * 44.50729 * 10 9 4 12 12 N 1.34778 * 119.99857 * 224.50944 * 10 9 4 13 13 C 1.47214 * 126.70448 * 355.13584 * 12 10 9 14 14 C 1.55736 * 106.44618 * 148.32016 * 13 12 10 15 15 H 1.09007 * 112.38289 * 258.03733 * 14 13 12 16 16 C 1.54328 * 109.23896 * 132.62678 * 14 13 12 17 17 C 1.55062 * 103.93199 * 223.03895 * 16 14 13 18 18 C 1.55055 * 102.10797 * 40.05427 * 17 16 14 19 19 H 1.09003 * 110.65573 * 78.61995 * 18 17 16 20 20 N 1.46504 * 110.52920 * 201.32727 * 18 17 16 21 21 C 1.36939 * 120.00195 * 269.51629 * 20 18 17 22 22 H 1.08003 * 119.99909 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00023 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99976 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00099 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47173 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46969 * 120.00264 * 25 23 21 28 28 H 1.48496 * 109.47210 * 240.00245 * 25 23 21 29 29 C 1.54317 * 103.93975 * 319.94000 * 18 17 16 30 30 H 1.08993 * 111.69424 * 262.79426 * 29 18 17 31 31 C 1.47218 * 126.70251 * 175.15523 * 12 10 9 32 32 H 1.09000 * 109.47399 * 60.00509 * 1 2 3 33 33 H 1.09004 * 109.47003 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47351 * 299.99578 * 1 2 3 35 35 H 1.08995 * 109.47206 * 239.99505 * 2 1 3 36 36 H 1.08994 * 109.46959 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.46719 * 299.99907 * 3 2 1 38 38 H 1.08997 * 109.47214 * 59.99449 * 3 2 1 39 39 H 1.07999 * 118.94975 * 179.97438 * 6 5 4 40 40 H 1.07994 * 120.53892 * 180.30752 * 8 7 6 41 41 H 1.08996 * 110.07504 * 267.97031 * 13 12 10 42 42 H 1.08999 * 110.06976 * 29.50942 * 13 12 10 43 43 H 1.09000 * 110.53161 * 341.64447 * 16 14 13 44 44 H 1.08989 * 110.53715 * 104.28333 * 16 14 13 45 45 H 1.08998 * 110.90004 * 281.85236 * 17 16 14 46 46 H 1.08993 * 110.90260 * 158.25622 * 17 16 14 47 47 H 0.97005 * 119.99796 * 89.51971 * 20 18 17 48 48 H 0.97003 * 120.00174 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.07078 * 92.03037 * 31 12 10 50 50 H 1.08998 * 110.11949 * 330.52155 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.6341 -0.3334 2.4330 6 6 2.0686 -0.9485 3.5154 7 7 2.9127 -1.9601 3.4554 8 6 3.3576 -2.4063 2.2939 9 6 2.9283 -1.7793 1.1184 10 6 3.4026 -2.2378 -0.2044 11 8 3.7485 -1.4265 -1.0409 12 7 3.4516 -3.5556 -0.4831 13 6 3.1663 -4.6623 0.4447 14 6 2.5671 -5.8147 -0.4146 15 1 1.4830 -5.8807 -0.3224 16 6 3.2691 -7.1396 -0.0490 17 6 3.5222 -7.8187 -1.4198 18 6 3.9455 -6.6178 -2.3045 19 1 4.9845 -6.3480 -2.1150 20 7 3.7473 -6.9290 -3.7223 21 6 4.7607 -7.4978 -4.4467 22 1 5.7060 -7.7173 -3.9727 23 6 4.5730 -7.7922 -5.7902 24 7 3.4211 -7.5242 -6.3679 25 14 5.9556 -8.5674 -6.7785 26 1 7.1387 -8.7659 -5.9033 27 1 5.5082 -9.8796 -7.3106 28 1 6.3188 -7.6733 -7.9072 29 6 3.0014 -5.4797 -1.8630 30 1 2.1450 -5.3850 -2.5304 31 6 3.8014 -4.1694 -1.7747 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6765 1.9564 0.8899 39 1 1.7223 -0.6133 4.4818 40 1 4.0449 -3.2383 2.2525 41 1 4.0853 -4.9894 0.9309 42 1 2.4392 -4.3455 1.1925 43 1 4.2125 -6.9443 0.4609 44 1 2.6206 -7.7572 0.5722 45 1 2.6103 -8.2793 -1.7998 46 1 4.3258 -8.5515 -1.3483 47 1 2.8981 -6.7321 -4.1479 48 1 3.2900 -7.7296 -7.3068 49 1 4.8702 -4.3803 -1.8114 50 1 3.5232 -3.5052 -2.5930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026422520.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:22 Heat of formation + Delta-G solvation = 20.328040 kcal Electronic energy + Delta-G solvation = -30719.929552 eV Core-core repulsion = 26746.994402 eV Total energy + Delta-G solvation = -3972.935149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75253 -40.18521 -38.52552 -36.40238 -35.28019 -33.57359 -33.32836 -32.09435 -31.04520 -29.47868 -28.51739 -27.35551 -25.80797 -25.44488 -24.88088 -23.49449 -22.87409 -21.15937 -20.49729 -19.68273 -19.25661 -18.27396 -17.55175 -17.10900 -16.95160 -16.29745 -15.57957 -15.42697 -15.02040 -14.96082 -14.39798 -14.34482 -14.12162 -13.90922 -13.85935 -13.37026 -13.24130 -13.06189 -12.73890 -12.66615 -12.38912 -12.06962 -11.92700 -11.80895 -11.70903 -11.56104 -11.27013 -11.13173 -10.96060 -10.85157 -10.82269 -10.73839 -10.47733 -10.37697 -10.24049 -10.06992 -9.94915 -9.82424 -9.70584 -9.62085 -8.92762 -8.79712 -6.99887 -5.81253 -3.10267 0.19718 0.63820 2.42644 2.75783 3.35453 3.40732 3.46664 3.48735 3.60440 3.71053 3.92630 4.12902 4.40412 4.50095 4.55997 4.67704 4.77202 4.82096 4.88982 4.90487 5.07711 5.16271 5.27876 5.31807 5.39199 5.46283 5.48714 5.53872 5.61504 5.66529 5.67133 5.75087 5.77393 5.86026 5.87283 5.92227 5.96908 6.02345 6.09599 6.11407 6.16264 6.23433 6.32680 6.46446 6.51893 6.56824 6.73114 6.96504 7.34733 7.63428 7.66801 7.89355 8.37027 9.48565 10.05117 10.38986 11.41227 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016665 B = 0.002615 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.750669 B =10704.423106 C =11624.946308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.133 4.133 4 C 0.237 3.763 5 N -0.515 5.515 6 C 0.310 3.690 7 N -0.524 5.524 8 C 0.181 3.819 9 C -0.230 4.230 10 C 0.583 3.417 11 O -0.522 6.522 12 N -0.608 5.608 13 C 0.097 3.903 14 C -0.096 4.096 15 H 0.087 0.913 16 C -0.116 4.116 17 C -0.143 4.143 18 C 0.184 3.816 19 H 0.059 0.941 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C -0.108 4.108 30 H 0.090 0.910 31 C 0.118 3.882 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.201 0.799 40 H 0.173 0.827 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.076 0.924 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 11.833 20.434 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.191 4.191 4 C 0.090 3.910 5 N -0.228 5.228 6 C 0.023 3.977 7 N -0.238 5.238 8 C 0.015 3.985 9 C -0.238 4.238 10 C 0.370 3.630 11 O -0.399 6.399 12 N -0.340 5.340 13 C -0.026 4.026 14 C -0.116 4.116 15 H 0.106 0.894 16 C -0.154 4.154 17 C -0.184 4.184 18 C 0.073 3.927 19 H 0.077 0.923 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.129 4.129 30 H 0.108 0.892 31 C -0.004 4.004 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.217 0.783 40 H 0.190 0.810 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.018 12.624 20.805 24.848 hybrid contribution 0.748 -0.865 -1.361 1.778 sum -4.270 11.759 19.444 23.121 Atomic orbital electron populations 1.21790 0.93068 1.02054 1.02845 1.20477 0.96854 0.97322 0.93416 1.21688 1.01381 0.93581 1.02431 1.21844 0.87160 0.88043 0.93986 1.68301 1.25915 1.30108 0.98511 1.25208 0.87942 0.86910 0.97660 1.68469 1.12669 1.14331 1.28322 1.23563 0.93290 0.95280 0.86415 1.21619 1.04389 1.01428 0.96343 1.17371 0.78424 0.81105 0.86140 1.90813 1.48231 1.52448 1.48429 1.48545 1.67020 1.04192 1.14237 1.22858 1.00093 0.86961 0.92686 1.22900 0.99994 0.94124 0.94567 0.89420 1.22469 0.99485 0.94984 0.98500 1.23304 1.01558 0.99600 0.93912 1.21242 0.95620 0.90173 0.85653 0.92329 1.42447 1.15802 1.73531 1.04206 1.19268 0.93695 1.32426 0.91746 0.91118 1.24741 0.97095 1.02022 0.96962 1.69664 1.23143 1.53508 1.11632 0.86146 0.81329 0.78645 0.80235 1.20548 1.21893 1.21855 1.22947 0.99397 0.94801 0.95730 0.89189 1.22267 0.99759 0.93934 0.84431 0.91565 0.92944 0.91460 0.87502 0.92405 0.91551 0.91989 0.78267 0.80987 0.90487 0.91275 0.91597 0.92076 0.91507 0.92022 0.78172 0.93519 0.90548 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.06 37.16 0.34 -0.96 16 2 C -0.06 -0.68 2.84 -91.77 -0.26 -0.94 16 3 C -0.13 -1.32 9.15 37.16 0.34 -0.98 16 4 C 0.24 2.71 5.52 -81.82 -0.45 2.26 16 5 N -0.51 -5.38 9.99 -10.48 -0.10 -5.48 16 6 C 0.31 2.76 12.27 -92.02 -1.13 1.63 16 7 N -0.52 -5.17 10.42 -14.24 -0.15 -5.32 16 8 C 0.18 1.80 9.21 -16.77 -0.15 1.64 16 9 C -0.23 -2.68 5.34 -104.69 -0.56 -3.24 16 10 C 0.58 7.97 6.87 -12.34 -0.08 7.88 16 11 O -0.52 -8.71 15.22 5.32 0.08 -8.63 16 12 N -0.61 -7.70 3.32 -171.46 -0.57 -8.27 16 13 C 0.10 0.97 5.04 -2.19 -0.01 0.96 16 14 C -0.10 -1.10 4.01 -87.48 -0.35 -1.45 16 15 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 16 C -0.12 -1.32 6.37 -24.95 -0.16 -1.48 16 17 C -0.14 -2.23 6.60 -24.56 -0.16 -2.39 16 18 C 0.18 3.27 3.03 -66.15 -0.20 3.07 16 19 H 0.06 1.07 7.15 -51.93 -0.37 0.70 16 20 N -0.72 -16.88 5.21 -51.70 -0.27 -17.15 16 21 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 22 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 25 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 C -0.11 -1.60 3.55 -88.54 -0.31 -1.91 16 30 H 0.09 1.45 7.81 -51.93 -0.41 1.04 16 31 C 0.12 1.72 6.52 -3.25 -0.02 1.70 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.60 7.98 -51.93 -0.41 0.19 16 35 H 0.11 1.39 5.42 -51.93 -0.28 1.11 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.20 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.17 1.35 6.65 -52.49 -0.35 1.01 16 41 H 0.08 0.66 6.92 -51.93 -0.36 0.30 16 42 H 0.07 0.61 6.47 -51.93 -0.34 0.28 16 43 H 0.07 0.68 7.22 -51.93 -0.37 0.30 16 44 H 0.06 0.62 8.14 -51.94 -0.42 0.19 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.38 9.67 7.61 -40.82 -0.31 9.36 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.08 1.16 7.13 -51.93 -0.37 0.79 16 50 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -31.25 394.75 -10.55 -41.80 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.76 Total: 8.05 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.43 Total: -1.17 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.37 Total: -62.93 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.25 -10.55 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026422520.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.129 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds