Wall clock time and date at job start Wed Apr 1 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31885 * 118.94690 * 2 1 4 4 C 1.32138 * 120.96320 * 179.68092 * 3 2 1 5 5 C 1.39969 * 118.92139 * 0.61000 * 4 3 2 6 6 C 1.47832 * 120.94104 * 179.69209 * 5 4 3 7 7 O 1.21552 * 119.99928 * 127.30157 * 6 5 4 8 8 N 1.34779 * 120.00019 * 307.58937 * 6 5 4 9 9 C 1.46922 * 120.63176 * 3.63577 * 8 6 5 10 10 C 1.53192 * 108.77526 * 233.59068 * 9 8 6 11 11 C 1.53046 * 109.31301 * 305.36146 * 10 9 8 12 12 C 1.53044 * 109.53281 * 61.36573 * 11 10 9 13 13 H 1.09006 * 109.49724 * 58.62435 * 12 11 10 14 14 N 1.46502 * 109.49398 * 178.68017 * 12 11 10 15 15 C 1.46498 * 119.99793 * 60.00730 * 14 12 11 16 16 C 1.36937 * 120.00230 * 239.99761 * 14 12 11 17 17 H 1.08002 * 120.00089 * 29.14402 * 16 14 12 18 18 C 1.38804 * 120.00107 * 209.13853 * 16 14 12 19 19 N 1.31616 * 120.00167 * 7.73036 * 18 16 14 20 20 Si 1.86803 * 119.99931 * 187.73130 * 18 16 14 21 21 H 1.48499 * 109.47041 * 60.00387 * 20 18 16 22 22 H 1.48500 * 109.47046 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47508 * 299.99843 * 20 18 16 24 24 C 1.46929 * 120.63048 * 183.36225 * 8 6 5 25 25 C 1.39930 * 118.12150 * 359.43349 * 5 4 3 26 26 C 1.50701 * 120.53748 * 180.24687 * 25 5 4 27 27 C 1.52995 * 117.49771 * 193.21972 * 26 25 5 28 28 C 1.52994 * 60.00412 * 252.51277 * 27 26 25 29 29 N 1.31854 * 118.95605 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46762 * 269.97173 * 1 2 3 31 31 H 1.08994 * 109.47168 * 29.97630 * 1 2 3 32 32 H 1.08998 * 109.46932 * 149.98374 * 1 2 3 33 33 H 1.07997 * 120.53917 * 180.33324 * 4 3 2 34 34 H 1.09000 * 109.58486 * 353.37662 * 9 8 6 35 35 H 1.08997 * 109.58949 * 113.80449 * 9 8 6 36 36 H 1.08994 * 109.50167 * 65.31514 * 10 9 8 37 37 H 1.09001 * 109.50035 * 185.38342 * 10 9 8 38 38 H 1.08997 * 109.45963 * 181.38040 * 11 10 9 39 39 H 1.08993 * 109.46136 * 301.34598 * 11 10 9 40 40 H 1.08999 * 109.47653 * 85.31579 * 15 14 12 41 41 H 1.09002 * 109.46947 * 205.32144 * 15 14 12 42 42 H 1.09011 * 109.47081 * 325.31463 * 15 14 12 43 43 H 0.97002 * 120.00145 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.58240 * 246.19839 * 24 8 6 45 45 H 1.09003 * 109.58349 * 6.61951 * 24 8 6 46 46 H 1.08997 * 115.55300 * 338.93922 * 26 25 5 47 47 H 1.08999 * 117.50161 * 0.02562 * 27 26 25 48 48 H 1.09006 * 117.49651 * 145.02296 * 27 26 25 49 49 H 1.08994 * 117.50241 * 252.51244 * 28 27 26 50 50 H 1.09000 * 117.49519 * 107.49100 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2006 0.0063 5 6 4.1855 0.0001 0.0000 6 6 5.6638 0.0000 -0.0002 7 8 6.2717 -0.6422 0.8338 8 7 6.3377 0.7168 -0.9214 9 6 5.6192 1.5656 -1.8817 10 6 6.0634 1.1914 -3.2992 11 6 7.5879 1.2869 -3.3938 12 6 8.2243 0.3004 -2.4119 13 1 7.8893 -0.7107 -2.6435 14 7 9.6833 0.3700 -2.5255 15 6 10.3793 1.6315 -2.2601 16 6 10.3964 -0.7441 -2.8796 17 1 9.9443 -1.4978 -3.5072 18 6 11.7005 -0.9047 -2.4320 19 7 12.2005 -0.0679 -1.5476 20 14 12.7458 -2.3084 -3.0849 21 1 12.8855 -2.1782 -4.5575 22 1 14.0895 -2.2596 -2.4545 23 1 12.0939 -3.6029 -2.7620 24 6 7.8050 0.6689 -0.9807 25 6 3.4661 -1.2001 -0.0006 26 6 4.1858 -2.5242 -0.0016 27 6 3.3622 -3.7756 -0.3125 28 6 3.8463 -3.5137 1.1150 29 7 2.1454 -1.1537 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 3.9816 2.1495 0.0117 34 1 4.5460 1.4042 -1.7804 35 1 5.8530 2.6128 -1.6900 36 1 5.7482 0.1721 -3.5221 37 1 5.6104 1.8770 -4.0154 38 1 7.9047 1.0448 -4.4082 39 1 7.9043 2.3002 -3.1467 40 1 10.5676 1.7246 -1.1906 41 1 11.3270 1.6437 -2.7984 42 1 9.7610 2.4648 -2.5941 43 1 13.1119 -0.1799 -1.2351 44 1 8.2133 1.6445 -0.7171 45 1 8.1743 -0.0844 -0.2848 46 1 5.2165 -2.4989 -0.3553 47 1 2.3000 -3.6411 -0.5168 48 1 3.8511 -4.5738 -0.8712 49 1 4.6535 -4.1394 1.4955 50 1 3.1024 -3.2069 1.8503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027667445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:05 Heat of formation + Delta-G solvation = 67.716271 kcal Electronic energy + Delta-G solvation = -31141.191233 eV Core-core repulsion = 27170.310992 eV Total energy + Delta-G solvation = -3970.880242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.66894 -39.70572 -37.68063 -37.21904 -35.17952 -33.83980 -33.24989 -32.27934 -31.31919 -29.53457 -28.50782 -26.02115 -25.76904 -25.40249 -23.72134 -23.28599 -22.44152 -21.72172 -21.25724 -20.07250 -18.81889 -18.11521 -17.27694 -16.75896 -16.56711 -16.03185 -15.56951 -15.29681 -15.05691 -14.57970 -14.24957 -14.15510 -14.07183 -13.68970 -13.61142 -13.42563 -13.03234 -12.80245 -12.71342 -12.58746 -12.37109 -12.17219 -11.97056 -11.73625 -11.71378 -11.49612 -11.19862 -11.09238 -10.82224 -10.70227 -10.63347 -10.41500 -10.40359 -10.32984 -10.23759 -9.95869 -9.79367 -9.70829 -9.52476 -9.33842 -8.59274 -8.39891 -6.70667 -5.78466 -3.28656 0.36375 0.74260 2.65740 3.02209 3.31983 3.37730 3.42708 3.43306 3.55378 3.72443 3.83201 4.06855 4.35244 4.45865 4.65881 4.80329 4.83755 4.88250 4.89561 4.97612 5.07281 5.18413 5.20810 5.24750 5.38728 5.47259 5.50665 5.54141 5.55451 5.60267 5.69798 5.74411 5.85248 5.94618 5.96984 6.05140 6.07339 6.10088 6.19342 6.33400 6.44656 6.60661 6.67302 6.75498 6.89485 6.93940 7.32645 7.51832 7.65613 7.77889 7.78432 8.21595 8.41335 9.20607 9.81018 10.33050 11.27703 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003090 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.610500 B = 9058.606909 C =10136.233919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.330 3.670 3 N -0.525 5.525 4 C 0.184 3.816 5 C -0.229 4.229 6 C 0.564 3.436 7 O -0.522 6.522 8 N -0.596 5.596 9 C 0.101 3.899 10 C -0.130 4.130 11 C -0.133 4.133 12 C 0.169 3.831 13 H 0.065 0.935 14 N -0.588 5.588 15 C 0.160 3.840 16 C -0.261 4.261 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.099 3.901 25 C 0.260 3.740 26 C -0.126 4.126 27 C -0.155 4.155 28 C -0.144 4.144 29 N -0.519 5.519 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.054 0.946 42 H -0.004 1.004 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.177 1.968 0.961 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 N -0.240 5.240 4 C 0.017 3.983 5 C -0.237 4.237 6 C 0.349 3.651 7 O -0.398 6.398 8 N -0.329 5.329 9 C -0.022 4.022 10 C -0.169 4.169 11 C -0.173 4.173 12 C 0.059 3.941 13 H 0.083 0.917 14 N -0.310 5.310 15 C 0.015 3.985 16 C -0.391 4.391 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.024 4.024 25 C 0.114 3.886 26 C -0.145 4.145 27 C -0.192 4.192 28 C -0.182 4.182 29 N -0.234 5.234 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.191 0.809 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.015 0.985 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.125 0.875 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.616 1.649 1.474 22.724 hybrid contribution 1.718 -0.437 -0.249 1.790 sum -20.898 1.212 1.225 20.969 Atomic orbital electron populations 1.20602 0.85384 1.04362 1.04036 1.23408 0.98308 0.83235 0.88647 1.68292 1.09468 1.30043 1.16155 1.23460 0.89433 0.97595 0.87811 1.21570 0.96674 0.96103 1.09328 1.17799 0.85518 0.79997 0.81771 1.90830 1.68897 1.42829 1.37221 1.48265 1.08407 1.44529 1.31748 1.21948 0.96112 0.94635 0.89537 1.21890 0.97873 1.01906 0.95199 1.22079 0.92756 1.01144 1.01308 1.20750 0.85696 0.97093 0.90533 0.91708 1.43852 0.99319 1.07917 1.79905 1.20775 0.94876 0.84150 0.98660 1.19123 0.95714 0.99554 1.24691 0.91717 1.25189 0.98976 0.98058 0.96795 1.70009 1.15508 1.37886 1.31286 0.86332 0.79550 0.82240 0.78362 1.20972 1.21564 1.20796 1.22713 0.75439 1.02741 1.01480 1.20800 0.88414 0.93407 0.85937 1.21052 0.99748 0.86038 1.07691 1.23011 1.00753 0.96898 0.98545 1.22907 1.03207 1.00262 0.91776 1.68018 1.08910 1.30165 1.16285 0.89414 0.89376 0.89455 0.80854 0.90730 0.90900 0.91814 0.91152 0.91620 0.92119 0.96294 0.92691 0.98535 0.93522 0.91705 0.88818 0.85199 0.87459 0.88130 0.87747 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.31 36.01 0.37 -0.24 16 2 C 0.33 3.69 7.64 -157.06 -1.20 2.49 16 3 N -0.53 -6.12 10.32 -10.39 -0.11 -6.23 16 4 C 0.18 2.14 8.72 -16.77 -0.15 2.00 16 5 C -0.23 -3.16 4.95 -104.69 -0.52 -3.68 16 6 C 0.56 9.20 6.43 -12.33 -0.08 9.12 16 7 O -0.52 -10.40 15.35 5.32 0.08 -10.32 16 8 N -0.60 -9.19 2.97 -173.63 -0.51 -9.70 16 9 C 0.10 1.20 5.51 -3.71 -0.02 1.18 16 10 C -0.13 -1.61 6.08 -26.61 -0.16 -1.78 16 11 C -0.13 -2.12 5.10 -26.68 -0.14 -2.26 16 12 C 0.17 3.34 2.76 -67.59 -0.19 3.15 16 13 H 0.06 1.37 7.89 -51.93 -0.41 0.96 16 14 N -0.59 -14.27 2.80 -173.09 -0.48 -14.75 16 15 C 0.16 3.79 7.98 59.85 0.48 4.27 16 16 C -0.26 -7.06 9.52 -15.06 -0.14 -7.20 16 17 H 0.07 1.72 7.84 -52.49 -0.41 1.31 16 18 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 19 N -0.90 -26.02 10.87 55.49 0.60 -25.41 16 20 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.10 1.87 5.80 -3.49 -0.02 1.85 16 25 C 0.26 3.55 6.50 -81.82 -0.53 3.02 16 26 C -0.13 -1.67 5.25 -91.77 -0.48 -2.15 16 27 C -0.15 -1.63 10.04 -26.74 -0.27 -1.90 16 28 C -0.14 -1.63 10.23 -26.73 -0.27 -1.90 16 29 N -0.52 -6.46 9.43 -6.67 -0.06 -6.52 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.17 1.62 7.31 -52.49 -0.38 1.23 16 34 H 0.07 0.79 4.67 -51.93 -0.24 0.55 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.96 6.75 -51.93 -0.35 0.61 16 40 H 0.02 0.48 7.78 -51.93 -0.40 0.08 16 41 H 0.05 1.42 6.97 -51.93 -0.36 1.06 16 42 H 0.00 -0.08 6.48 -51.92 -0.34 -0.41 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 45 H 0.09 2.09 7.02 -51.93 -0.36 1.73 16 46 H 0.13 1.96 6.92 -51.93 -0.36 1.60 16 47 H 0.11 1.10 7.65 -51.93 -0.40 0.70 16 48 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 395.10 15.07 5.95 5.95 Total: -1.00 -31.69 395.10 -10.74 -42.43 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.78 Total: 1.76 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -3.41 Total: 6.13 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.57 Total: -62.62 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.69 -10.74 -42.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027667445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.149 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds