Wall clock time and date at job start Wed Apr 1 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31885 * 118.94690 * 2 1 4 4 C 1.32138 * 120.96320 * 179.68092 * 3 2 1 5 5 C 1.39969 * 118.92139 * 0.61000 * 4 3 2 6 6 C 1.47832 * 120.94104 * 179.69209 * 5 4 3 7 7 O 1.21552 * 119.99928 * 127.30157 * 6 5 4 8 8 N 1.34779 * 120.00019 * 307.58937 * 6 5 4 9 9 C 1.46922 * 120.63176 * 3.63577 * 8 6 5 10 10 C 1.53192 * 108.77526 * 233.59068 * 9 8 6 11 11 C 1.53046 * 109.31301 * 305.36146 * 10 9 8 12 12 C 1.53044 * 109.53281 * 61.36573 * 11 10 9 13 13 H 1.09006 * 109.49724 * 58.62435 * 12 11 10 14 14 N 1.46502 * 109.49398 * 178.68017 * 12 11 10 15 15 C 1.46498 * 119.99793 * 60.00730 * 14 12 11 16 16 C 1.36937 * 120.00230 * 239.99761 * 14 12 11 17 17 H 1.08002 * 120.00089 * 29.14402 * 16 14 12 18 18 C 1.38804 * 120.00107 * 209.13853 * 16 14 12 19 19 N 1.31616 * 120.00167 * 7.73036 * 18 16 14 20 20 Si 1.86803 * 119.99931 * 187.73130 * 18 16 14 21 21 H 1.48499 * 109.47041 * 60.00387 * 20 18 16 22 22 H 1.48500 * 109.47046 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47508 * 299.99843 * 20 18 16 24 24 C 1.46929 * 120.63048 * 183.36225 * 8 6 5 25 25 C 1.39930 * 118.12150 * 359.43349 * 5 4 3 26 26 C 1.50701 * 120.53748 * 180.24687 * 25 5 4 27 27 C 1.52995 * 117.49771 * 193.21972 * 26 25 5 28 28 C 1.52994 * 60.00412 * 252.51277 * 27 26 25 29 29 N 1.31854 * 118.95605 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46762 * 269.97173 * 1 2 3 31 31 H 1.08994 * 109.47168 * 29.97630 * 1 2 3 32 32 H 1.08998 * 109.46932 * 149.98374 * 1 2 3 33 33 H 1.07997 * 120.53917 * 180.33324 * 4 3 2 34 34 H 1.09000 * 109.58486 * 353.37662 * 9 8 6 35 35 H 1.08997 * 109.58949 * 113.80449 * 9 8 6 36 36 H 1.08994 * 109.50167 * 65.31514 * 10 9 8 37 37 H 1.09001 * 109.50035 * 185.38342 * 10 9 8 38 38 H 1.08997 * 109.45963 * 181.38040 * 11 10 9 39 39 H 1.08993 * 109.46136 * 301.34598 * 11 10 9 40 40 H 1.08999 * 109.47653 * 85.31579 * 15 14 12 41 41 H 1.09002 * 109.46947 * 205.32144 * 15 14 12 42 42 H 1.09011 * 109.47081 * 325.31463 * 15 14 12 43 43 H 0.97002 * 120.00145 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.58240 * 246.19839 * 24 8 6 45 45 H 1.09003 * 109.58349 * 6.61951 * 24 8 6 46 46 H 1.08997 * 115.55300 * 338.93922 * 26 25 5 47 47 H 1.08999 * 117.50161 * 0.02562 * 27 26 25 48 48 H 1.09006 * 117.49651 * 145.02296 * 27 26 25 49 49 H 1.08994 * 117.50241 * 252.51244 * 28 27 26 50 50 H 1.09000 * 117.49519 * 107.49100 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4659 1.2006 0.0063 5 6 4.1855 0.0001 0.0000 6 6 5.6638 0.0000 -0.0002 7 8 6.2717 -0.6422 0.8338 8 7 6.3377 0.7168 -0.9214 9 6 5.6192 1.5656 -1.8817 10 6 6.0634 1.1914 -3.2992 11 6 7.5879 1.2869 -3.3938 12 6 8.2243 0.3004 -2.4119 13 1 7.8893 -0.7107 -2.6435 14 7 9.6833 0.3700 -2.5255 15 6 10.3793 1.6315 -2.2601 16 6 10.3964 -0.7441 -2.8796 17 1 9.9443 -1.4978 -3.5072 18 6 11.7005 -0.9047 -2.4320 19 7 12.2005 -0.0679 -1.5476 20 14 12.7458 -2.3084 -3.0849 21 1 12.8855 -2.1782 -4.5575 22 1 14.0895 -2.2596 -2.4545 23 1 12.0939 -3.6029 -2.7620 24 6 7.8050 0.6689 -0.9807 25 6 3.4661 -1.2001 -0.0006 26 6 4.1858 -2.5242 -0.0016 27 6 3.3622 -3.7756 -0.3125 28 6 3.8463 -3.5137 1.1150 29 7 2.1454 -1.1537 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 3.9816 2.1495 0.0117 34 1 4.5460 1.4042 -1.7804 35 1 5.8530 2.6128 -1.6900 36 1 5.7482 0.1721 -3.5221 37 1 5.6104 1.8770 -4.0154 38 1 7.9047 1.0448 -4.4082 39 1 7.9043 2.3002 -3.1467 40 1 10.5676 1.7246 -1.1906 41 1 11.3270 1.6437 -2.7984 42 1 9.7610 2.4648 -2.5941 43 1 13.1119 -0.1799 -1.2351 44 1 8.2133 1.6445 -0.7171 45 1 8.1743 -0.0844 -0.2848 46 1 5.2165 -2.4989 -0.3553 47 1 2.3000 -3.6411 -0.5168 48 1 3.8511 -4.5738 -0.8712 49 1 4.6535 -4.1394 1.4955 50 1 3.1024 -3.2069 1.8503 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027667445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:04 Heat of formation + Delta-G solvation = 49.473422 kcal Electronic energy + Delta-G solvation = -31141.982302 eV Core-core repulsion = 27170.310992 eV Total energy + Delta-G solvation = -3971.671311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.65201 -40.96378 -38.98644 -38.31810 -36.82966 -34.87231 -34.25121 -33.71546 -32.88914 -30.80938 -29.68665 -28.03060 -26.80136 -26.55177 -25.29765 -24.37389 -23.33616 -23.09881 -22.26199 -21.43299 -20.20677 -19.11522 -18.82985 -18.36296 -17.47454 -17.27164 -17.04742 -16.50673 -16.17583 -15.96015 -15.74259 -15.36953 -15.20573 -15.07639 -14.98848 -14.48892 -14.37216 -14.02043 -13.89414 -13.64385 -13.56514 -13.33644 -13.07548 -12.97820 -12.82506 -12.75974 -12.62317 -12.49962 -12.39695 -12.23446 -12.20234 -12.14426 -11.78739 -11.71945 -11.55427 -11.41637 -11.29733 -10.95729 -10.63801 -10.46220 -10.33447 -9.78375 -8.69489 -7.88301 -5.40643 -0.59437 -0.19724 1.40424 1.44273 1.46227 1.52366 1.80144 2.37853 2.47920 2.68205 2.87831 2.89084 3.15538 3.26394 3.28195 3.58005 3.69030 3.88480 3.90568 3.97194 3.99122 4.01770 4.04059 4.11837 4.20408 4.33266 4.49652 4.52315 4.63375 4.67212 4.72667 4.75913 4.79623 4.82482 4.85368 4.91430 4.95079 4.99831 5.02680 5.10059 5.19705 5.24684 5.32323 5.36979 5.40081 5.52939 5.60768 5.68554 5.73059 6.26609 6.34321 6.87485 6.94431 7.13747 7.83098 8.28687 9.15586 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.003090 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.610500 B = 9058.606909 C =10136.233919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.328 3.672 3 N -0.528 5.528 4 C 0.196 3.804 5 C -0.249 4.249 6 C 0.566 3.434 7 O -0.570 6.570 8 N -0.593 5.593 9 C 0.098 3.902 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.168 3.832 13 H 0.043 0.957 14 N -0.606 5.606 15 C 0.176 3.824 16 C -0.270 4.270 17 H 0.063 0.937 18 C -0.045 4.045 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.117 3.883 25 C 0.255 3.745 26 C -0.152 4.152 27 C -0.132 4.132 28 C -0.142 4.142 29 N -0.525 5.525 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.200 0.800 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.069 0.931 40 H -0.007 1.007 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.250 0.750 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.106 0.894 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.520 2.977 -0.271 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.063 3.937 3 N -0.242 5.242 4 C 0.029 3.971 5 C -0.257 4.257 6 C 0.353 3.647 7 O -0.449 6.449 8 N -0.325 5.325 9 C -0.023 4.023 10 C -0.160 4.160 11 C -0.161 4.161 12 C 0.060 3.940 13 H 0.061 0.939 14 N -0.328 5.328 15 C 0.032 3.968 16 C -0.401 4.401 17 H 0.081 0.919 18 C -0.241 4.241 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.199 1.199 22 H -0.219 1.219 23 H -0.205 1.205 24 C -0.008 4.008 25 C 0.109 3.891 26 C -0.171 4.171 27 C -0.169 4.169 28 C -0.179 4.179 29 N -0.240 5.240 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.216 0.784 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.011 0.989 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.119 0.881 47 H 0.134 0.866 48 H 0.131 0.869 49 H 0.125 0.875 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.030 2.674 0.205 26.168 hybrid contribution 2.630 -0.756 0.146 2.740 sum -23.400 1.918 0.350 23.481 Atomic orbital electron populations 1.20785 0.82416 1.05670 1.05302 1.24278 1.00035 0.82743 0.86649 1.68448 1.09099 1.30097 1.16554 1.23822 0.89552 0.97607 0.86130 1.21329 0.94682 0.97362 1.12299 1.18180 0.86681 0.78877 0.80954 1.90798 1.70175 1.44734 1.39239 1.48227 1.06939 1.44949 1.32418 1.22268 0.96783 0.95219 0.88062 1.21862 0.94987 1.02654 0.96477 1.21905 0.95140 0.99816 0.99212 1.20868 0.83550 0.97467 0.92134 0.93891 1.44056 1.01089 1.07452 1.80207 1.20511 0.94390 0.85275 0.96650 1.19427 0.96230 1.00146 1.24261 0.91884 1.25922 1.00268 1.00490 0.97424 1.70172 1.15422 1.39553 1.32755 0.85354 0.77607 0.79442 0.78095 1.19930 1.21868 1.20519 1.22150 0.77943 1.01120 0.99559 1.20865 0.89130 0.93330 0.85785 1.20974 0.98969 0.87403 1.09769 1.23072 1.00771 0.95339 0.97676 1.22960 1.03319 0.99489 0.92172 1.68111 1.07985 1.30845 1.17014 0.87935 0.87869 0.88331 0.78382 0.88711 0.88160 0.92609 0.87299 0.92325 0.91241 0.98896 0.95476 0.94773 0.94107 0.91542 0.93390 0.88109 0.86620 0.86927 0.87548 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.31 71.24 0.73 -0.16 16 2 C 0.33 6.42 7.64 138.71 1.06 7.48 16 3 N -0.53 -10.70 10.32 -186.79 -1.93 -12.63 16 4 C 0.20 4.09 8.72 85.07 0.74 4.83 16 5 C -0.25 -6.69 4.95 -19.91 -0.10 -6.78 16 6 C 0.57 18.88 6.43 86.78 0.56 19.44 16 7 O -0.57 -24.21 15.35 -3.88 -0.06 -24.27 16 8 N -0.59 -18.16 2.97 -821.50 -2.44 -20.60 16 9 C 0.10 2.03 5.51 86.36 0.48 2.51 16 10 C -0.12 -2.64 6.08 30.67 0.19 -2.45 16 11 C -0.12 -3.66 5.10 30.62 0.16 -3.51 16 12 C 0.17 6.78 2.76 45.21 0.12 6.90 16 13 H 0.04 1.89 7.89 -2.38 -0.02 1.87 16 14 N -0.61 -30.21 2.80 -701.52 -1.96 -32.17 16 15 C 0.18 8.54 7.98 127.77 1.02 9.56 16 16 C -0.27 -15.06 9.52 84.03 0.80 -14.26 16 17 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 18 C -0.05 -2.56 5.13 84.86 0.44 -2.12 16 19 N -0.93 -55.85 10.87 21.65 0.24 -55.62 16 20 Si 0.97 45.71 29.56 68.60 2.03 47.74 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 C 0.12 4.56 5.80 86.50 0.50 5.06 16 25 C 0.25 6.82 6.50 42.92 0.28 7.09 16 26 C -0.15 -4.12 5.25 -11.54 -0.06 -4.18 16 27 C -0.13 -2.67 10.04 30.59 0.31 -2.36 16 28 C -0.14 -3.22 10.23 30.59 0.31 -2.90 16 29 N -0.52 -12.09 9.43 -175.03 -1.65 -13.74 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.20 3.00 7.31 -2.91 -0.02 2.98 16 34 H 0.09 1.66 4.67 -2.39 -0.01 1.65 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 1.99 6.75 -2.39 -0.02 1.98 16 40 H -0.01 -0.39 7.78 -2.39 -0.02 -0.41 16 41 H 0.03 1.43 6.97 -2.39 -0.02 1.41 16 42 H 0.03 1.37 6.48 -2.38 -0.02 1.35 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.07 2.55 7.53 -2.39 -0.02 2.53 16 45 H 0.05 2.31 7.02 -2.39 -0.02 2.29 16 46 H 0.10 3.30 6.92 -2.39 -0.02 3.28 16 47 H 0.12 2.17 7.65 -2.39 -0.02 2.15 16 48 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 49 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -73.29 395.10 2.70 -70.59 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.95 Total: 16.55 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 7.53 Total: 24.14 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -7.74 Total: -134.75 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.29 2.70 -70.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027667445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.059 kcal (2) G-P(sol) polarization free energy of solvation -73.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds