Wall clock time and date at job start Wed Apr 1 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30778 * 125.72051 * 2 1 4 4 C 1.34431 * 109.31520 * 180.02562 * 3 2 1 5 5 C 1.33854 * 107.80223 * 0.02562 * 4 3 2 6 6 N 1.34408 * 125.72177 * 179.97438 * 2 1 3 7 7 C 1.46472 * 128.44379 * 359.86058 * 6 2 1 8 8 C 1.53291 * 108.69010 * 197.38117 * 7 6 2 9 9 C 1.53115 * 109.70004 * 309.21431 * 8 7 6 10 10 H 1.09006 * 109.52589 * 309.94355 * 9 8 7 11 11 C 1.50693 * 109.49676 * 189.85859 * 9 8 7 12 12 O 1.21285 * 120.00319 * 336.21564 * 11 9 8 13 13 N 1.34786 * 120.00192 * 156.21790 * 11 9 8 14 14 C 1.47160 * 120.70857 * 185.01908 * 13 11 9 15 15 C 1.53889 * 108.03009 * 132.74907 * 14 13 11 16 16 H 1.08999 * 112.57687 * 182.22339 * 15 14 13 17 17 C 1.54137 * 107.70854 * 306.31988 * 15 14 13 18 18 C 1.54277 * 104.89018 * 89.40941 * 17 15 14 19 19 C 1.54548 * 104.84795 * 359.81359 * 18 17 15 20 20 H 1.08998 * 112.18332 * 146.40901 * 19 18 17 21 21 C 1.49243 * 120.76449 * 5.08640 * 13 11 9 22 22 N 1.48305 * 104.35971 * 24.69623 * 19 18 17 23 23 C 1.36934 * 128.07538 * 139.08414 * 22 19 18 24 24 H 1.07997 * 120.00013 * 345.31937 * 23 22 19 25 25 C 1.38816 * 120.00096 * 165.32504 * 23 22 19 26 26 N 1.31619 * 119.99532 * 350.70048 * 25 23 22 27 27 Si 1.86796 * 119.99851 * 170.70221 * 25 23 22 28 28 H 1.48501 * 109.46954 * 269.99282 * 27 25 23 29 29 H 1.48500 * 109.47519 * 30.00154 * 27 25 23 30 30 H 1.48508 * 109.46631 * 149.99765 * 27 25 23 31 31 C 1.50708 * 128.68405 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46778 * 270.04371 * 1 2 3 33 33 H 1.08998 * 109.46905 * 30.04370 * 1 2 3 34 34 H 1.08996 * 109.47460 * 150.04423 * 1 2 3 35 35 H 1.08009 * 126.09725 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.60115 * 317.12819 * 7 6 2 37 37 H 1.09001 * 109.59925 * 77.60394 * 7 6 2 38 38 H 1.08997 * 109.43019 * 189.15197 * 8 7 6 39 39 H 1.08997 * 109.43464 * 69.28536 * 8 7 6 40 40 H 1.08994 * 109.75588 * 13.10810 * 14 13 11 41 41 H 1.09002 * 109.74309 * 252.37831 * 14 13 11 42 42 H 1.09000 * 110.50319 * 330.47339 * 17 15 14 43 43 H 1.09001 * 110.27583 * 208.23466 * 17 15 14 44 44 H 1.08998 * 110.36891 * 240.96277 * 18 17 15 45 45 H 1.09006 * 110.35817 * 118.64765 * 18 17 15 46 46 H 1.09004 * 110.50955 * 107.82810 * 21 13 11 47 47 H 1.09003 * 109.75149 * 346.60844 * 21 13 11 48 48 H 0.97002 * 119.99706 * 180.02562 * 26 25 23 49 49 H 1.09000 * 109.74345 * 76.09040 * 31 5 4 50 50 H 1.09003 * 109.78665 * 315.39226 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2918 -1.0912 0.0005 7 6 1.8921 -2.5003 0.0039 8 6 3.0921 -3.3502 0.4369 9 6 4.3189 -2.9748 -0.3988 10 1 4.0564 -2.9859 -1.4567 11 6 5.4239 -3.9674 -0.1443 12 8 5.4441 -4.6004 0.8901 13 7 6.3898 -4.1517 -1.0661 14 6 7.4134 -5.1932 -0.8840 15 6 7.5362 -5.9762 -2.2031 16 1 8.2516 -6.7959 -2.1381 17 6 6.1269 -6.4656 -2.5907 18 6 5.5330 -5.3269 -3.4455 19 6 6.6390 -4.2485 -3.4923 20 1 6.6496 -3.7107 -4.4403 21 6 6.4461 -3.3038 -2.2929 22 7 7.8960 -5.0006 -3.2605 23 6 9.1051 -4.8366 -3.8821 24 1 9.1699 -4.2616 -4.7940 25 6 10.2475 -5.4096 -3.3403 26 7 10.2065 -5.9521 -2.1418 27 14 11.8428 -5.4106 -4.3121 28 1 11.9181 -6.6420 -5.1386 29 1 11.8850 -4.2178 -5.1957 30 1 12.9936 -5.3728 -3.3742 31 6 4.7918 -1.5691 -0.0029 32 1 -0.3633 0.0008 1.0277 33 1 -0.3633 0.8896 -0.5145 34 1 -0.3634 -0.8903 -0.5131 35 1 4.4171 1.3396 -0.0003 36 1 1.0698 -2.6455 0.7044 37 1 1.5783 -2.7938 -0.9978 38 1 2.8616 -4.4052 0.2888 39 1 3.3026 -3.1702 1.4911 40 1 7.1141 -5.8677 -0.0818 41 1 8.3698 -4.7308 -0.6397 42 1 5.5203 -6.6270 -1.6996 43 1 6.1932 -7.3835 -3.1749 44 1 4.6342 -4.9283 -2.9749 45 1 5.3091 -5.6844 -4.4507 46 1 7.2809 -2.6051 -2.2363 47 1 5.5115 -2.7538 -2.4038 48 1 11.0049 -6.3522 -1.7630 49 1 5.2349 -1.5966 0.9926 50 1 5.5273 -1.2112 -0.7235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029474885.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:52 Heat of formation + Delta-G solvation = 43.617493 kcal Electronic energy + Delta-G solvation = -31859.545771 eV Core-core repulsion = 27887.620528 eV Total energy + Delta-G solvation = -3971.925243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.36095 -41.60054 -39.64004 -37.22888 -35.40215 -34.43490 -34.04530 -32.49784 -31.89951 -31.05377 -30.66429 -28.32168 -27.26907 -25.65245 -25.44242 -25.12009 -23.51479 -21.60772 -21.29865 -21.19903 -20.30259 -19.68723 -18.69685 -17.82208 -17.65611 -17.05193 -16.87450 -16.60616 -16.34004 -15.69262 -15.53398 -15.06912 -14.95895 -14.79938 -14.68032 -14.53787 -14.41391 -14.24291 -13.91692 -13.71354 -13.56796 -13.27639 -13.24402 -13.11188 -12.91035 -12.84996 -12.76326 -12.72380 -12.60230 -12.10886 -12.04821 -11.97018 -11.81511 -11.49374 -11.43972 -11.12898 -10.98326 -10.81260 -10.54843 -10.43244 -9.72854 -9.15225 -8.70764 -7.85073 -5.20334 1.07974 1.48520 1.49807 1.57268 1.63193 1.85047 2.04528 2.14954 2.50841 3.23771 3.34931 3.48515 3.54062 3.55892 3.64275 3.79269 3.92696 4.05801 4.11651 4.14068 4.23718 4.27194 4.33024 4.34914 4.40653 4.47598 4.59823 4.62380 4.68279 4.70536 4.75261 4.78716 4.86309 4.87594 4.96943 4.99219 5.04389 5.10297 5.12344 5.13049 5.16160 5.28058 5.41487 5.43347 5.55461 5.58524 5.79770 5.84286 6.23367 6.34212 6.59141 7.06532 7.14509 7.21869 7.73909 8.51877 9.26313 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.002906 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.534933 B = 9632.362906 C =10012.450786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.203 3.797 3 N -0.534 5.534 4 C -0.042 4.042 5 C -0.023 4.023 6 N -0.452 5.452 7 C 0.106 3.894 8 C -0.109 4.109 9 C -0.098 4.098 10 H 0.118 0.882 11 C 0.514 3.486 12 O -0.592 6.592 13 N -0.592 5.592 14 C 0.131 3.869 15 C 0.165 3.835 16 H 0.076 0.924 17 C -0.127 4.127 18 C -0.109 4.109 19 C 0.125 3.875 20 H 0.093 0.907 21 C 0.101 3.899 22 N -0.604 5.604 23 C -0.229 4.229 24 H 0.082 0.918 25 C -0.057 4.057 26 N -0.938 5.938 27 Si 0.969 3.031 28 H -0.291 1.291 29 H -0.269 1.269 30 H -0.302 1.302 31 C -0.027 4.027 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.175 0.825 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.111 0.889 48 H 0.246 0.754 49 H 0.073 0.927 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 7.123 0.947 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.060 4.060 3 N -0.254 5.254 4 C -0.188 4.188 5 C -0.138 4.138 6 N -0.136 5.136 7 C -0.015 4.015 8 C -0.147 4.147 9 C -0.119 4.119 10 H 0.135 0.865 11 C 0.303 3.697 12 O -0.474 6.474 13 N -0.323 5.323 14 C 0.006 3.994 15 C 0.058 3.942 16 H 0.094 0.906 17 C -0.167 4.167 18 C -0.148 4.148 19 C 0.018 3.982 20 H 0.111 0.889 21 C -0.023 4.023 22 N -0.326 5.326 23 C -0.358 4.358 24 H 0.100 0.900 25 C -0.251 4.251 26 N -0.586 5.586 27 Si 0.799 3.201 28 H -0.218 1.218 29 H -0.194 1.194 30 H -0.229 1.229 31 C -0.065 4.065 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.192 0.808 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.129 0.871 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.128 7.408 1.451 22.436 hybrid contribution 2.308 -1.020 0.020 2.524 sum -18.820 6.388 1.471 19.929 Atomic orbital electron populations 1.20335 0.82188 1.05249 1.04546 1.23846 0.97080 0.80871 1.04171 1.70427 1.02560 1.29758 1.22692 1.22063 0.95118 0.92668 1.08980 1.20942 0.85972 0.94973 1.11924 1.45465 1.05666 1.08255 1.54221 1.22263 0.98239 0.75582 1.05423 1.21639 0.92025 1.01159 0.99872 1.21388 0.93757 0.93340 1.03432 0.86453 1.20904 0.82971 0.83373 0.82431 1.90648 1.77852 1.51380 1.27507 1.48734 1.27439 1.34578 1.21521 1.21887 0.89005 0.89711 0.98798 1.21622 0.93388 0.92310 0.86925 0.90625 1.22444 0.96701 0.98400 0.99118 1.22409 0.97307 0.95385 0.99701 1.22254 0.86710 0.92950 0.96284 0.88929 1.22969 1.02212 0.92849 0.84240 1.45334 1.06689 1.37061 1.43527 1.19309 0.83913 1.29009 1.03567 0.90015 1.25516 1.00240 1.02360 0.96990 1.70037 1.28264 1.44307 1.15981 0.85221 0.79603 0.77834 0.77472 1.21829 1.19426 1.22930 1.20047 0.93402 0.90003 1.03088 0.89103 0.89130 0.88362 0.80794 0.86211 0.86981 0.88251 0.91710 0.92680 0.94633 0.92437 0.92932 0.90126 0.91252 0.92665 0.87092 0.94518 0.90904 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.24 71.24 0.73 0.05 16 2 C 0.20 4.05 7.94 138.25 1.10 5.15 16 3 N -0.53 -14.02 11.27 -188.77 -2.13 -16.15 16 4 C -0.04 -1.03 11.84 83.30 0.99 -0.05 16 5 C -0.02 -0.52 6.57 40.73 0.27 -0.25 16 6 N -0.45 -8.39 3.13 -500.12 -1.57 -9.95 16 7 C 0.11 1.25 6.61 86.48 0.57 1.82 16 8 C -0.11 -1.92 4.60 30.73 0.14 -1.78 16 9 C -0.10 -2.08 1.69 -11.33 -0.02 -2.10 16 10 H 0.12 2.03 6.44 -2.38 -0.02 2.02 16 11 C 0.51 16.16 6.79 87.65 0.60 16.75 16 12 O -0.59 -23.21 15.75 -3.04 -0.05 -23.26 16 13 N -0.59 -20.32 2.28 -809.53 -1.85 -22.17 16 14 C 0.13 5.70 5.78 86.55 0.50 6.20 16 15 C 0.17 7.35 3.11 45.33 0.14 7.49 16 16 H 0.08 4.01 6.36 -2.39 -0.02 4.00 16 17 C -0.13 -4.50 6.16 31.41 0.19 -4.30 16 18 C -0.11 -3.14 6.19 31.55 0.20 -2.94 16 19 C 0.13 4.17 4.27 45.47 0.19 4.37 16 20 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 21 C 0.10 2.99 5.46 86.15 0.47 3.46 16 22 N -0.60 -27.28 2.80 -637.47 -1.79 -29.06 16 23 C -0.23 -11.65 10.37 84.03 0.87 -10.78 16 24 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 25 C -0.06 -3.03 5.42 84.86 0.46 -2.57 16 26 N -0.94 -53.02 10.42 21.65 0.23 -52.79 16 27 Si 0.97 43.82 29.56 68.60 2.03 45.85 16 28 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 31 C -0.03 -0.58 5.47 30.02 0.16 -0.42 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 0.51 7.95 -2.39 -0.02 0.49 16 35 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 39 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 40 H 0.05 2.49 7.16 -2.39 -0.02 2.47 16 41 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 42 H 0.06 1.95 7.83 -2.39 -0.02 1.94 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.85 7.86 -2.39 -0.02 1.83 16 45 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.11 2.34 5.33 -2.39 -0.01 2.32 16 48 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 49 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 50 H 0.10 2.04 7.41 -2.39 -0.02 2.02 16 Total: -1.00 -71.33 382.89 3.37 -67.96 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.94 Total: 19.48 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 7.56 Total: 20.10 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -7.10 Total: -130.13 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -71.33 3.37 -67.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029474885.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.576 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds