Wall clock time and date at job start Wed Apr 1 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47438 * 2 1 4 4 N 1.32142 * 120.53952 * 270.24554 * 3 2 1 5 5 C 1.31879 * 120.96708 * 180.24204 * 4 3 2 6 6 N 1.31871 * 122.09431 * 359.76746 * 5 4 3 7 7 C 1.32148 * 120.96481 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.53451 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47104 * 295.44063 * 8 7 6 10 10 C 1.39948 * 118.92685 * 359.97438 * 7 6 5 11 11 C 1.47831 * 120.93749 * 179.97438 * 10 7 6 12 12 O 1.21551 * 119.99982 * 77.98347 * 11 10 7 13 13 N 1.34775 * 119.99919 * 257.70510 * 11 10 7 14 14 C 1.47164 * 120.70821 * 3.63087 * 13 11 10 15 15 C 1.54327 * 107.80301 * 132.67919 * 14 13 11 16 16 H 1.09001 * 112.53348 * 182.37426 * 15 14 13 17 17 C 1.54545 * 107.98505 * 306.74181 * 15 14 13 18 18 C 1.55860 * 105.00161 * 89.00378 * 17 15 14 19 19 C 1.54552 * 104.09107 * 0.02562 * 18 17 15 20 20 H 1.09007 * 112.17795 * 146.81337 * 19 18 17 21 21 C 1.47165 * 120.71027 * 183.90676 * 13 11 10 22 22 N 1.48306 * 104.90877 * 24.75657 * 19 18 17 23 23 C 1.36932 * 128.07641 * 138.83279 * 22 19 18 24 24 H 1.08002 * 120.00356 * 346.94325 * 23 22 19 25 25 C 1.38818 * 120.00134 * 166.94731 * 23 22 19 26 26 N 1.31617 * 119.99953 * 350.31857 * 25 23 22 27 27 Si 1.86797 * 120.00064 * 170.30906 * 25 23 22 28 28 H 1.48497 * 109.47229 * 60.00410 * 27 25 23 29 29 H 1.48502 * 109.47042 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47580 * 300.00388 * 27 25 23 31 31 H 1.08997 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46816 * 299.99707 * 1 2 3 33 33 H 1.08994 * 109.47162 * 59.99562 * 1 2 3 34 34 H 1.09004 * 109.47257 * 240.00439 * 2 1 3 35 35 H 1.09004 * 109.47674 * 120.00507 * 2 1 3 36 36 H 1.07996 * 118.95074 * 179.74867 * 5 4 3 37 37 H 1.09004 * 109.47655 * 55.44288 * 8 7 6 38 38 H 1.09005 * 109.47185 * 175.44433 * 8 7 6 39 39 H 1.08995 * 109.47425 * 186.97285 * 9 8 7 40 40 H 1.09005 * 109.47393 * 306.97916 * 9 8 7 41 41 H 1.09004 * 109.46796 * 66.97457 * 9 8 7 42 42 H 1.08998 * 109.75044 * 252.38338 * 14 13 11 43 43 H 1.09002 * 109.75325 * 13.12051 * 14 13 11 44 44 H 1.09001 * 110.35997 * 207.85696 * 17 15 14 45 45 H 1.08998 * 110.36152 * 330.06272 * 17 15 14 46 46 H 1.08997 * 110.89892 * 241.33506 * 18 17 15 47 47 H 1.08997 * 110.55007 * 118.51798 * 18 17 15 48 48 H 1.08993 * 109.74827 * 346.88164 * 21 13 11 49 49 H 1.09001 * 109.75149 * 107.56681 * 21 13 11 50 50 H 0.97003 * 120.00458 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2516 2.0554 -1.1381 5 6 2.6957 3.2971 -1.1480 6 7 2.9370 3.9638 -0.0361 7 6 2.7405 3.4076 1.1464 8 6 3.0199 4.1783 2.4110 9 6 4.5155 4.4891 2.4988 10 6 2.2687 2.0914 1.2054 11 6 2.0338 1.4257 2.5043 12 8 1.0334 1.6807 3.1458 13 7 2.9262 0.5319 2.9745 14 6 4.1776 0.2655 2.2473 15 6 5.3340 0.3027 3.2686 16 1 6.3080 0.1546 2.8024 17 6 5.2512 1.6424 4.0346 18 6 4.3195 1.3551 5.2505 19 6 3.9380 -0.1338 5.0887 20 1 3.8073 -0.6319 6.0495 21 6 2.6674 -0.2030 4.2230 22 7 5.0424 -0.7267 4.2959 23 6 5.6505 -1.9410 4.4712 24 1 5.4864 -2.5009 5.3801 25 6 6.4779 -2.4523 3.4808 26 7 6.5302 -1.8702 2.3016 27 14 7.5173 -3.9665 3.8219 28 1 6.6320 -5.1058 4.1732 29 1 8.3071 -4.3076 2.6114 30 1 8.4397 -3.6895 4.9523 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.8676 3.7833 -2.0969 37 1 2.4551 5.1105 2.4008 38 1 2.7216 3.5820 3.2733 39 1 4.7374 4.9358 3.4679 40 1 5.0856 3.5671 2.3845 41 1 4.7888 5.1859 1.7064 42 1 4.1286 -0.7167 1.7773 43 1 4.3319 1.0311 1.4869 44 1 6.2404 1.9440 4.3790 45 1 4.8191 2.4161 3.3999 46 1 3.4282 1.9813 5.2139 47 1 4.8546 1.5097 6.1875 48 1 1.8340 0.2561 4.7545 49 1 2.4316 -1.2428 3.9962 50 1 7.1086 -2.2272 1.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029478749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:50 Heat of formation + Delta-G solvation = 43.585093 kcal Electronic energy + Delta-G solvation = -33201.854866 eV Core-core repulsion = 29229.928218 eV Total energy + Delta-G solvation = -3971.926648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48149 -39.79501 -37.80748 -35.76393 -34.29872 -33.70522 -32.52368 -31.52634 -30.82377 -30.41744 -29.26625 -26.60597 -25.46577 -24.95196 -23.97208 -23.65772 -23.03576 -20.80220 -20.33189 -19.75622 -18.74733 -17.96143 -17.54659 -16.51633 -16.08107 -15.76641 -15.43777 -14.98635 -14.69145 -14.40104 -14.17217 -13.87041 -13.76245 -13.68041 -13.31659 -13.24024 -13.08240 -12.87541 -12.76547 -12.25189 -11.88377 -11.84124 -11.79451 -11.64038 -11.58076 -11.54008 -11.22337 -11.04510 -10.96450 -10.91253 -10.82293 -10.36645 -10.26802 -10.13543 -9.86412 -9.69794 -9.67022 -9.64117 -9.27230 -9.22963 -8.88075 -8.21025 -6.95594 -5.91795 -3.26344 0.72571 1.01723 2.78549 3.31521 3.35021 3.37652 3.38433 3.68814 3.96051 3.97845 4.23122 4.35380 4.66774 4.92078 5.04743 5.07974 5.14119 5.22363 5.26069 5.27544 5.30696 5.48382 5.55857 5.56959 5.64225 5.73193 5.75724 5.80546 5.87739 5.89594 5.91721 5.96523 6.00414 6.03145 6.12451 6.18324 6.24051 6.33314 6.36752 6.46349 6.53497 6.54930 6.65950 6.82135 6.82441 6.94851 7.13928 7.37401 7.57091 7.86279 8.04483 8.04972 8.43406 8.97750 9.60216 10.35278 11.20815 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.004541 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.558317 B = 6164.220582 C = 6665.283436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C 0.216 3.784 4 N -0.522 5.522 5 C 0.304 3.696 6 N -0.521 5.521 7 C 0.214 3.786 8 C -0.080 4.080 9 C -0.150 4.150 10 C -0.213 4.213 11 C 0.566 3.434 12 O -0.550 6.550 13 N -0.579 5.579 14 C 0.107 3.893 15 C 0.168 3.832 16 H 0.123 0.877 17 C -0.150 4.150 18 C -0.124 4.124 19 C 0.134 3.866 20 H 0.079 0.921 21 C 0.100 3.900 22 N -0.582 5.582 23 C -0.225 4.225 24 H 0.077 0.923 25 C -0.003 4.003 26 N -0.917 5.917 27 Si 0.913 3.087 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.198 0.802 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 9.093 -2.939 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C 0.069 3.931 4 N -0.236 5.236 5 C 0.016 3.984 6 N -0.236 5.236 7 C 0.068 3.932 8 C -0.118 4.118 9 C -0.207 4.207 10 C -0.220 4.220 11 C 0.351 3.649 12 O -0.429 6.429 13 N -0.310 5.310 14 C -0.016 4.016 15 C 0.060 3.940 16 H 0.141 0.859 17 C -0.188 4.188 18 C -0.163 4.163 19 C 0.026 3.974 20 H 0.097 0.903 21 C -0.024 4.024 22 N -0.303 5.303 23 C -0.352 4.352 24 H 0.095 0.905 25 C -0.200 4.200 26 N -0.563 5.563 27 Si 0.743 3.257 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.214 0.786 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.789 9.434 -3.577 12.161 hybrid contribution 0.443 -1.192 0.578 1.396 sum -6.347 8.242 -2.999 10.826 Atomic orbital electron populations 1.21678 0.93252 1.02638 1.02453 1.20697 0.97157 0.89509 1.04975 1.21803 0.88398 0.96160 0.86724 1.68249 1.14952 1.10766 1.29637 1.25032 0.89315 0.87104 0.96901 1.68209 1.18489 1.38474 0.98389 1.21768 0.87608 0.89497 0.94369 1.20644 0.98883 1.00215 0.92029 1.21884 0.93679 1.02665 1.02470 1.21499 1.06780 0.97328 0.96386 1.17754 0.83327 0.79651 0.84174 1.90748 1.28526 1.64722 1.58941 1.48240 1.19654 1.38607 1.24452 1.22690 0.83426 1.00746 0.94772 1.21998 0.97705 0.85278 0.89005 0.85938 1.23233 0.98632 0.99453 0.97525 1.22749 0.98530 0.97015 0.98048 1.21955 0.88061 0.92964 0.94446 0.90301 1.22477 0.99389 0.95609 0.84924 1.45158 1.36173 1.15979 1.32995 1.18977 1.22024 0.93657 1.00586 0.90480 1.24779 1.01252 0.98861 0.95094 1.69783 1.41530 1.42038 1.02942 0.86196 0.80201 0.82330 0.76995 1.21108 1.21606 1.21188 0.91373 0.92120 0.92293 0.88877 0.89125 0.78558 0.89174 0.89577 0.91552 0.91300 0.91712 0.89848 0.93127 0.92709 0.91796 0.92586 0.92576 0.90411 0.91598 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.89 37.16 0.37 -1.44 16 2 C -0.09 -1.23 5.91 -27.89 -0.16 -1.39 16 3 C 0.22 3.37 5.95 -81.82 -0.49 2.89 16 4 N -0.52 -7.71 10.36 -10.48 -0.11 -7.82 16 5 C 0.30 4.01 12.27 -92.02 -1.13 2.88 16 6 N -0.52 -7.46 10.32 -10.47 -0.11 -7.57 16 7 C 0.21 3.25 6.14 -81.82 -0.50 2.75 16 8 C -0.08 -1.07 5.98 -27.88 -0.17 -1.23 16 9 C -0.15 -1.80 8.93 37.16 0.33 -1.47 16 10 C -0.21 -3.48 3.74 -104.69 -0.39 -3.87 16 11 C 0.57 9.98 4.40 -12.34 -0.05 9.92 16 12 O -0.55 -10.81 16.37 5.32 0.09 -10.73 16 13 N -0.58 -10.36 1.82 -172.36 -0.31 -10.68 16 14 C 0.11 2.08 5.21 -2.98 -0.02 2.06 16 15 C 0.17 3.51 3.15 -65.42 -0.21 3.30 16 16 H 0.12 2.96 6.23 -51.93 -0.32 2.63 16 17 C -0.15 -2.64 6.22 -24.39 -0.15 -2.79 16 18 C -0.12 -2.10 6.31 -24.39 -0.15 -2.25 16 19 C 0.13 2.51 4.27 -65.65 -0.28 2.23 16 20 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 21 C 0.10 1.81 5.90 -3.20 -0.02 1.79 16 22 N -0.58 -13.01 2.81 -152.31 -0.43 -13.44 16 23 C -0.22 -5.60 10.38 -15.06 -0.16 -5.76 16 24 H 0.08 1.89 7.85 -52.49 -0.41 1.47 16 25 C 0.00 -0.08 5.42 -17.43 -0.09 -0.17 16 26 N -0.92 -23.87 10.52 55.49 0.58 -23.28 16 27 Si 0.91 20.56 29.56 -169.99 -5.03 15.54 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.44 6.35 -51.93 -0.33 1.11 16 36 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.27 6.44 -51.93 -0.33 0.94 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.94 5.74 -51.93 -0.30 0.64 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.85 8.00 -51.93 -0.42 1.44 16 43 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.03 3.69 -51.93 -0.19 0.84 16 46 H 0.06 0.91 7.84 -51.93 -0.41 0.50 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.08 1.35 7.09 -51.93 -0.37 0.98 16 49 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -27.87 384.77 -10.41 -38.28 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -7.62 Total: 6.45 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.27 Total: 7.45 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.38 Total: -62.79 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.87 -10.41 -38.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029478749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.866 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds