Wall clock time and date at job start Wed Apr 1 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.47438 * 2 1 4 4 N 1.32142 * 120.53952 * 270.24554 * 3 2 1 5 5 C 1.31879 * 120.96708 * 180.24204 * 4 3 2 6 6 N 1.31871 * 122.09431 * 359.76746 * 5 4 3 7 7 C 1.32148 * 120.96481 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.53451 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47104 * 295.44063 * 8 7 6 10 10 C 1.39948 * 118.92685 * 359.97438 * 7 6 5 11 11 C 1.47831 * 120.93749 * 179.97438 * 10 7 6 12 12 O 1.21551 * 119.99982 * 77.98347 * 11 10 7 13 13 N 1.34775 * 119.99919 * 257.70510 * 11 10 7 14 14 C 1.47164 * 120.70821 * 3.63087 * 13 11 10 15 15 C 1.54327 * 107.80301 * 132.67919 * 14 13 11 16 16 H 1.09001 * 112.53348 * 182.37426 * 15 14 13 17 17 C 1.54545 * 107.98505 * 306.74181 * 15 14 13 18 18 C 1.55860 * 105.00161 * 89.00378 * 17 15 14 19 19 C 1.54552 * 104.09107 * 0.02562 * 18 17 15 20 20 H 1.09007 * 112.17795 * 146.81337 * 19 18 17 21 21 C 1.47165 * 120.71027 * 183.90676 * 13 11 10 22 22 N 1.48306 * 104.90877 * 24.75657 * 19 18 17 23 23 C 1.36932 * 128.07641 * 138.83279 * 22 19 18 24 24 H 1.08002 * 120.00356 * 346.94325 * 23 22 19 25 25 C 1.38818 * 120.00134 * 166.94731 * 23 22 19 26 26 N 1.31617 * 119.99953 * 350.31857 * 25 23 22 27 27 Si 1.86797 * 120.00064 * 170.30906 * 25 23 22 28 28 H 1.48497 * 109.47229 * 60.00410 * 27 25 23 29 29 H 1.48502 * 109.47042 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47580 * 300.00388 * 27 25 23 31 31 H 1.08997 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46816 * 299.99707 * 1 2 3 33 33 H 1.08994 * 109.47162 * 59.99562 * 1 2 3 34 34 H 1.09004 * 109.47257 * 240.00439 * 2 1 3 35 35 H 1.09004 * 109.47674 * 120.00507 * 2 1 3 36 36 H 1.07996 * 118.95074 * 179.74867 * 5 4 3 37 37 H 1.09004 * 109.47655 * 55.44288 * 8 7 6 38 38 H 1.09005 * 109.47185 * 175.44433 * 8 7 6 39 39 H 1.08995 * 109.47425 * 186.97285 * 9 8 7 40 40 H 1.09005 * 109.47393 * 306.97916 * 9 8 7 41 41 H 1.09004 * 109.46796 * 66.97457 * 9 8 7 42 42 H 1.08998 * 109.75044 * 252.38338 * 14 13 11 43 43 H 1.09002 * 109.75325 * 13.12051 * 14 13 11 44 44 H 1.09001 * 110.35997 * 207.85696 * 17 15 14 45 45 H 1.08998 * 110.36152 * 330.06272 * 17 15 14 46 46 H 1.08997 * 110.89892 * 241.33506 * 18 17 15 47 47 H 1.08997 * 110.55007 * 118.51798 * 18 17 15 48 48 H 1.08993 * 109.74827 * 346.88164 * 21 13 11 49 49 H 1.09001 * 109.75149 * 107.56681 * 21 13 11 50 50 H 0.97003 * 120.00458 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2516 2.0554 -1.1381 5 6 2.6957 3.2971 -1.1480 6 7 2.9370 3.9638 -0.0361 7 6 2.7405 3.4076 1.1464 8 6 3.0199 4.1783 2.4110 9 6 4.5155 4.4891 2.4988 10 6 2.2687 2.0914 1.2054 11 6 2.0338 1.4257 2.5043 12 8 1.0334 1.6807 3.1458 13 7 2.9262 0.5319 2.9745 14 6 4.1776 0.2655 2.2473 15 6 5.3340 0.3027 3.2686 16 1 6.3080 0.1546 2.8024 17 6 5.2512 1.6424 4.0346 18 6 4.3195 1.3551 5.2505 19 6 3.9380 -0.1338 5.0887 20 1 3.8073 -0.6319 6.0495 21 6 2.6674 -0.2030 4.2230 22 7 5.0424 -0.7267 4.2959 23 6 5.6505 -1.9410 4.4712 24 1 5.4864 -2.5009 5.3801 25 6 6.4779 -2.4523 3.4808 26 7 6.5302 -1.8702 2.3016 27 14 7.5173 -3.9665 3.8219 28 1 6.6320 -5.1058 4.1732 29 1 8.3071 -4.3076 2.6114 30 1 8.4397 -3.6895 4.9523 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.8676 3.7833 -2.0969 37 1 2.4551 5.1105 2.4008 38 1 2.7216 3.5820 3.2733 39 1 4.7374 4.9358 3.4679 40 1 5.0856 3.5671 2.3845 41 1 4.7888 5.1859 1.7064 42 1 4.1286 -0.7167 1.7773 43 1 4.3319 1.0311 1.4869 44 1 6.2404 1.9440 4.3790 45 1 4.8191 2.4161 3.3999 46 1 3.4282 1.9813 5.2139 47 1 4.8546 1.5097 6.1875 48 1 1.8340 0.2561 4.7545 49 1 2.4316 -1.2428 3.9962 50 1 7.1086 -2.2272 1.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029478749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:49 Heat of formation + Delta-G solvation = 30.735941 kcal Electronic energy + Delta-G solvation = -33202.412047 eV Core-core repulsion = 29229.928218 eV Total energy + Delta-G solvation = -3972.483829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.70001 -41.22629 -39.31312 -36.87755 -35.59781 -35.17340 -34.21765 -32.65563 -32.23580 -31.71248 -30.95300 -28.10633 -26.59602 -26.28813 -25.48767 -25.24964 -24.14605 -21.92893 -21.79683 -21.26365 -20.37789 -19.13716 -19.05721 -17.78043 -17.54228 -17.23338 -16.86160 -16.54838 -16.09507 -15.65412 -15.44053 -15.26106 -14.94134 -14.86412 -14.79187 -14.66143 -14.56039 -14.39420 -13.88449 -13.54289 -13.36440 -13.29715 -13.22682 -12.95899 -12.83070 -12.73848 -12.66666 -12.61096 -12.48245 -12.19991 -12.13340 -11.89214 -11.79825 -11.50861 -11.42329 -11.28828 -11.12771 -11.07490 -10.72428 -10.47564 -10.37949 -9.81380 -8.73881 -7.83903 -5.18095 -0.42791 -0.14518 1.37797 1.50827 1.52349 1.57457 1.93565 2.51665 2.55072 2.84873 2.92852 3.11126 3.30168 3.36033 3.48807 3.76906 3.95423 4.04354 4.07031 4.13029 4.15840 4.19777 4.22506 4.24128 4.30867 4.32703 4.40545 4.51480 4.55114 4.66467 4.72654 4.79859 4.84850 4.88297 4.91474 4.96656 4.99691 5.03040 5.05122 5.09949 5.11623 5.22594 5.29461 5.31899 5.46302 5.54114 5.59069 5.77855 5.79759 6.22347 6.38732 6.92455 6.99036 7.08002 7.73621 8.51388 9.26684 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.004541 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.558317 B = 6164.220582 C = 6665.283436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C 0.210 3.790 4 N -0.531 5.531 5 C 0.308 3.692 6 N -0.524 5.524 7 C 0.212 3.788 8 C -0.079 4.079 9 C -0.143 4.143 10 C -0.239 4.239 11 C 0.578 3.422 12 O -0.569 6.569 13 N -0.577 5.577 14 C 0.133 3.867 15 C 0.164 3.836 16 H 0.088 0.912 17 C -0.141 4.141 18 C -0.113 4.113 19 C 0.130 3.870 20 H 0.088 0.912 21 C 0.105 3.895 22 N -0.600 5.600 23 C -0.230 4.230 24 H 0.078 0.922 25 C -0.050 4.050 26 N -0.935 5.935 27 Si 0.967 3.033 28 H -0.282 1.282 29 H -0.298 1.298 30 H -0.284 1.284 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.238 0.762 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.051 0.949 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 10.676 -2.946 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 C 0.064 3.936 4 N -0.245 5.245 5 C 0.021 3.979 6 N -0.238 5.238 7 C 0.066 3.934 8 C -0.117 4.117 9 C -0.200 4.200 10 C -0.246 4.246 11 C 0.364 3.636 12 O -0.449 6.449 13 N -0.307 5.307 14 C 0.008 3.992 15 C 0.056 3.944 16 H 0.106 0.894 17 C -0.180 4.180 18 C -0.152 4.152 19 C 0.023 3.977 20 H 0.106 0.894 21 C -0.019 4.019 22 N -0.322 5.322 23 C -0.359 4.359 24 H 0.096 0.904 25 C -0.245 4.245 26 N -0.583 5.583 27 Si 0.797 3.203 28 H -0.208 1.208 29 H -0.225 1.225 30 H -0.210 1.210 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.070 0.930 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.306 11.033 -3.569 13.706 hybrid contribution 0.555 -1.646 0.536 1.817 sum -6.751 9.388 -3.033 11.954 Atomic orbital electron populations 1.21617 0.91897 1.03634 1.01962 1.20708 0.98267 0.89063 1.04334 1.21979 0.88127 0.96587 0.86945 1.68335 1.15636 1.11557 1.29001 1.25898 0.87306 0.86556 0.98107 1.68324 1.18805 1.38364 0.98335 1.22095 0.86767 0.89101 0.95475 1.20701 0.99955 1.00439 0.90579 1.21833 0.92306 1.01972 1.03885 1.21448 1.09195 0.98221 0.95750 1.17835 0.82500 0.78904 0.84333 1.90728 1.29133 1.65302 1.59769 1.48136 1.19330 1.38863 1.24360 1.22203 0.83687 0.98968 0.94325 1.21895 0.96463 0.86724 0.89308 0.89423 1.23151 0.99228 0.97875 0.97711 1.22670 0.98849 0.95528 0.98154 1.22145 0.87150 0.94062 0.94391 0.89416 1.22377 0.99462 0.95046 0.84994 1.45318 1.37318 1.15703 1.33834 1.19237 1.21741 0.94552 1.00389 0.90411 1.25390 1.02645 1.01228 0.95222 1.69957 1.42003 1.42969 1.03324 0.85329 0.78758 0.79940 0.76256 1.20845 1.22470 1.21002 0.89693 0.93872 0.91330 0.88064 0.91148 0.74618 0.87437 0.90964 0.89693 0.93106 0.90939 0.93252 0.92649 0.92536 0.90148 0.91402 0.91283 0.89196 0.93042 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.89 71.98 0.71 -2.58 16 2 C -0.09 -2.46 5.91 29.85 0.18 -2.28 16 3 C 0.21 6.45 5.95 42.93 0.26 6.70 16 4 N -0.53 -14.87 10.36 -187.06 -1.94 -16.81 16 5 C 0.31 7.37 12.27 180.84 2.22 9.59 16 6 N -0.52 -13.85 10.32 -187.05 -1.93 -15.78 16 7 C 0.21 6.13 6.14 42.93 0.26 6.39 16 8 C -0.08 -1.95 5.98 29.85 0.18 -1.77 16 9 C -0.14 -3.10 8.93 71.98 0.64 -2.46 16 10 C -0.24 -7.66 3.74 -19.91 -0.07 -7.73 16 11 C 0.58 20.17 4.40 86.78 0.38 20.55 16 12 O -0.57 -22.01 16.37 -3.88 -0.06 -22.08 16 13 N -0.58 -20.70 1.82 -817.50 -1.49 -22.19 16 14 C 0.13 5.25 5.21 86.70 0.45 5.71 16 15 C 0.16 6.94 3.15 45.62 0.14 7.09 16 16 H 0.09 4.38 6.23 -2.39 -0.01 4.37 16 17 C -0.14 -4.84 6.22 32.11 0.20 -4.64 16 18 C -0.11 -3.62 6.31 32.11 0.20 -3.42 16 19 C 0.13 4.78 4.27 45.48 0.19 4.97 16 20 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 21 C 0.11 3.78 5.90 86.56 0.51 4.29 16 22 N -0.60 -27.08 2.81 -635.79 -1.79 -28.87 16 23 C -0.23 -11.63 10.38 84.04 0.87 -10.76 16 24 H 0.08 3.82 7.85 -2.91 -0.02 3.80 16 25 C -0.05 -2.61 5.42 84.86 0.46 -2.15 16 26 N -0.93 -50.24 10.52 21.65 0.23 -50.01 16 27 Si 0.97 42.94 29.56 68.60 2.03 44.97 16 28 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 29 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 30 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 35 H 0.07 2.30 6.35 -2.38 -0.02 2.28 16 36 H 0.24 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.00 6.44 -2.38 -0.02 1.98 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.29 5.74 -2.38 -0.01 1.28 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.05 2.30 8.00 -2.39 -0.02 2.28 16 43 H 0.06 2.12 6.43 -2.39 -0.02 2.11 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.08 2.49 3.69 -2.39 -0.01 2.48 16 46 H 0.07 2.04 7.84 -2.39 -0.02 2.02 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.09 3.03 7.09 -2.39 -0.02 3.01 16 49 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.25 13.24 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -60.28 384.77 3.78 -56.49 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.95 Total: 26.77 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 7.79 Total: 27.50 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.92 Total: -133.66 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.06 Total: -22.08 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -60.28 3.78 -56.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029478749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.228 kcal (2) G-P(sol) polarization free energy of solvation -60.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds