Wall clock time and date at job start Wed Apr 1 2020 03:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.53006 * 109.46920 * 240.00054 * 2 1 3 5 5 C 1.50703 * 109.47355 * 120.00185 * 2 1 3 6 6 N 1.31863 * 118.94977 * 59.99484 * 5 2 1 7 7 C 1.32152 * 120.96668 * 180.02562 * 6 5 2 8 8 C 1.39949 * 118.92018 * 359.97438 * 7 6 5 9 9 C 1.47838 * 120.93662 * 180.02562 * 8 7 6 10 10 O 1.21549 * 120.00004 * 211.51212 * 9 8 7 11 11 N 1.34774 * 119.99908 * 31.51711 * 9 8 7 12 12 C 1.47166 * 120.71117 * 5.56270 * 11 9 8 13 13 C 1.54483 * 108.00524 * 132.68113 * 12 11 9 14 14 H 1.09001 * 112.35250 * 181.98825 * 13 12 11 15 15 C 1.54553 * 107.85226 * 306.77014 * 13 12 11 16 16 C 1.53735 * 104.95515 * 88.86193 * 15 13 12 17 17 C 1.54546 * 104.95323 * 359.97438 * 16 15 13 18 18 H 1.08999 * 112.68298 * 146.56713 * 17 16 15 19 19 C 1.47158 * 120.71071 * 185.58976 * 11 9 8 20 20 N 1.48303 * 106.89929 * 58.48985 * 13 12 11 21 21 C 1.36933 * 128.07607 * 106.80227 * 20 13 12 22 22 H 1.08003 * 120.00203 * 164.56093 * 21 20 13 23 23 C 1.38811 * 120.00090 * 344.56404 * 21 20 13 24 24 N 1.31619 * 119.99791 * 349.94108 * 23 21 20 25 25 Si 1.86797 * 120.00276 * 169.94857 * 23 21 20 26 26 H 1.48502 * 109.47095 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.46838 * 299.99413 * 25 23 21 28 28 H 1.48498 * 109.47521 * 59.99606 * 25 23 21 29 29 C 1.39949 * 118.12248 * 0.28206 * 8 7 6 30 30 N 1.31864 * 118.94969 * 240.01930 * 5 2 1 31 31 H 1.09005 * 109.46595 * 300.00030 * 1 2 3 32 32 H 1.09001 * 109.47077 * 59.99838 * 1 2 3 33 33 H 1.08994 * 109.47282 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47175 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46814 * 299.99895 * 3 2 1 36 36 H 1.08997 * 109.47201 * 60.00148 * 3 2 1 37 37 H 1.09002 * 109.46833 * 299.99776 * 4 2 1 38 38 H 1.09004 * 109.46782 * 59.99798 * 4 2 1 39 39 H 1.08996 * 109.47204 * 179.97438 * 4 2 1 40 40 H 1.07994 * 120.54078 * 179.97438 * 7 6 5 41 41 H 1.08999 * 109.75264 * 252.41920 * 12 11 9 42 42 H 1.09006 * 109.74958 * 13.15084 * 12 11 9 43 43 H 1.09009 * 110.36011 * 207.57556 * 15 13 12 44 44 H 1.08999 * 110.36705 * 329.77987 * 15 13 12 45 45 H 1.09002 * 110.41427 * 241.06475 * 16 15 13 46 46 H 1.08999 * 110.20932 * 118.81824 * 16 15 13 47 47 H 1.08998 * 109.75487 * 107.58086 * 19 11 9 48 48 H 1.09007 * 109.78715 * 346.87776 * 19 11 9 49 49 H 0.97003 * 120.00278 * 179.97438 * 24 23 21 50 50 H 1.07997 * 120.53450 * 179.70226 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0325 -0.7105 1.2304 6 7 1.7012 -1.9729 1.4185 7 6 2.1192 -2.6341 2.4837 8 6 2.9250 -1.9730 3.4176 9 6 3.4178 -2.6699 4.6246 10 8 3.5943 -2.0498 5.6550 11 7 3.6715 -3.9929 4.5825 12 6 3.5806 -4.7356 3.3152 13 6 4.8478 -5.6092 3.1818 14 1 4.8701 -6.1669 2.2455 15 6 6.0777 -4.6898 3.3573 16 6 6.3555 -4.6832 4.8693 17 6 5.2694 -5.5985 5.4784 18 1 5.6235 -6.1483 6.3504 19 6 4.0447 -4.7258 5.8027 20 7 4.8833 -6.5009 4.3662 21 6 4.6253 -7.8447 4.4196 22 1 4.9246 -8.4181 5.2845 23 6 3.9792 -8.4699 3.3620 24 7 3.4396 -7.7493 2.4019 25 14 3.8755 -10.3341 3.3015 26 1 3.1399 -10.7495 2.0803 27 1 5.2459 -10.9054 3.2729 28 1 3.1578 -10.8292 4.5036 29 6 3.2465 -0.6319 3.1793 30 7 2.7889 -0.0497 2.0849 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6768 1.9563 0.8900 37 1 1.6767 -1.7490 -1.2492 38 1 1.6766 -0.2074 -2.1393 39 1 3.1300 -0.7209 -1.2496 40 1 1.8434 -3.6678 2.6310 41 1 2.6936 -5.3690 3.3222 42 1 3.5278 -4.0358 2.4811 43 1 6.9343 -5.0955 2.8189 44 1 5.8519 -3.6830 3.0060 45 1 6.2665 -3.6725 5.2678 46 1 7.3481 -5.0856 5.0715 47 1 3.2157 -5.3580 6.1209 48 1 4.2948 -4.0202 6.5951 49 1 2.9884 -8.1862 1.6626 50 1 3.8617 -0.0829 3.8768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029605569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:46 Heat of formation + Delta-G solvation = 54.296880 kcal Electronic energy + Delta-G solvation = -31752.497189 eV Core-core repulsion = 27781.035039 eV Total energy + Delta-G solvation = -3971.462150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.46467 -39.96386 -37.93692 -36.72960 -34.29542 -33.56383 -32.64435 -31.66117 -30.40257 -29.35740 -27.48518 -27.41274 -26.65955 -25.00693 -24.73344 -23.60904 -23.58557 -20.62223 -19.97169 -19.75876 -18.87183 -17.89893 -17.28247 -16.61664 -15.97412 -15.66955 -15.55480 -15.05732 -14.67679 -14.55301 -14.10500 -13.90566 -13.82796 -13.61923 -13.41111 -13.24910 -13.00225 -12.88617 -12.38461 -12.33938 -11.95976 -11.87480 -11.82916 -11.76425 -11.63249 -11.25092 -11.15212 -11.14226 -11.03766 -10.96435 -10.85843 -10.72950 -10.47091 -10.15270 -9.95064 -9.73310 -9.69065 -9.63441 -9.34354 -9.23838 -8.86108 -8.21976 -6.94787 -5.94753 -3.28891 0.53509 1.04982 2.97396 3.31165 3.32384 3.37217 3.37834 3.68189 3.77883 4.04027 4.34662 4.51355 4.70695 4.77830 4.81924 4.83796 4.99313 5.09159 5.23890 5.28043 5.48275 5.49953 5.58936 5.63308 5.67564 5.69895 5.70641 5.76185 5.78423 5.79390 5.81259 5.86446 5.97899 6.00517 6.14821 6.19290 6.27347 6.28944 6.31948 6.44823 6.49264 6.52284 6.59015 6.78400 6.80005 6.89793 7.09470 7.34474 7.55923 7.85381 8.01376 8.03055 8.43234 8.95969 9.58289 10.34147 11.19087 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003458 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.833309 B = 8094.531034 C = 9365.344668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.128 4.128 4 C -0.137 4.137 5 C 0.337 3.663 6 N -0.514 5.514 7 C 0.184 3.816 8 C -0.236 4.236 9 C 0.559 3.441 10 O -0.554 6.554 11 N -0.581 5.581 12 C 0.091 3.909 13 C 0.169 3.831 14 H 0.121 0.879 15 C -0.135 4.135 16 C -0.124 4.124 17 C 0.134 3.866 18 H 0.081 0.919 19 C 0.102 3.898 20 N -0.583 5.583 21 C -0.227 4.227 22 H 0.077 0.923 23 C -0.001 4.001 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.285 1.285 28 H -0.284 1.284 29 C 0.199 3.801 30 N -0.519 5.519 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.185 0.815 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.256 0.744 50 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 13.671 -4.286 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 C -0.186 4.186 4 C -0.195 4.195 5 C 0.070 3.930 6 N -0.227 5.227 7 C 0.017 3.983 8 C -0.243 4.243 9 C 0.346 3.654 10 O -0.434 6.434 11 N -0.311 5.311 12 C -0.032 4.032 13 C 0.061 3.939 14 H 0.138 0.862 15 C -0.175 4.175 16 C -0.163 4.163 17 C 0.025 3.975 18 H 0.099 0.901 19 C -0.022 4.022 20 N -0.304 5.304 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.198 4.198 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.212 1.212 28 H -0.211 1.211 29 C 0.032 3.968 30 N -0.232 5.232 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.201 0.799 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.355 14.180 -4.689 15.120 hybrid contribution 0.204 -1.529 0.778 1.727 sum -2.152 12.651 -3.911 13.415 Atomic orbital electron populations 1.21846 0.92457 1.03130 1.01961 1.19428 0.96325 0.95074 0.89494 1.21715 1.01808 0.93357 1.01671 1.21853 1.01112 1.01229 0.95282 1.23301 0.88296 0.87242 0.94128 1.68266 1.23599 1.09184 1.21620 1.24052 0.87884 1.00013 0.86305 1.21820 1.05152 0.97852 0.99524 1.17811 0.78544 0.82186 0.86889 1.90729 1.54684 1.65955 1.32039 1.48122 1.65159 1.06664 1.11160 1.23200 1.03505 0.94118 0.82415 1.21984 0.88513 0.88543 0.94827 0.86152 1.22525 1.00059 0.98907 0.95967 1.22379 0.98736 0.98836 0.96322 1.21988 0.91918 0.90510 0.93037 0.90139 1.22432 0.99276 0.94710 0.85762 1.45170 1.79594 1.04035 1.01618 1.18974 1.31224 0.81314 1.04013 0.90541 1.24804 0.98529 0.98206 0.98277 1.69790 1.39772 1.33827 1.12803 0.86195 0.77625 0.84836 0.77053 1.21545 1.21164 1.21074 1.23365 0.91500 0.90049 0.91841 1.68333 1.12111 1.38988 1.03720 0.92803 0.91562 0.91227 0.91930 0.92404 0.91993 0.91124 0.91595 0.92657 0.79870 0.89164 0.91892 0.92624 0.93428 0.92542 0.92593 0.91524 0.90362 0.93348 0.80784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.37 37.16 0.31 -0.99 16 2 C 0.00 -0.01 0.92 -155.65 -0.14 -0.16 16 3 C -0.13 -1.21 7.66 37.16 0.28 -0.92 16 4 C -0.14 -1.35 8.37 37.16 0.31 -1.04 16 5 C 0.34 4.62 6.25 -157.07 -0.98 3.63 16 6 N -0.51 -7.57 9.77 -10.40 -0.10 -7.68 16 7 C 0.18 2.79 8.72 -16.77 -0.15 2.65 16 8 C -0.24 -3.68 5.38 -104.69 -0.56 -4.25 16 9 C 0.56 9.87 7.47 -12.33 -0.09 9.78 16 10 O -0.55 -10.90 16.28 5.32 0.09 -10.81 16 11 N -0.58 -10.47 2.25 -172.30 -0.39 -10.86 16 12 C 0.09 1.71 4.08 -2.90 -0.01 1.70 16 13 C 0.17 3.53 3.17 -65.34 -0.21 3.32 16 14 H 0.12 2.87 6.39 -51.93 -0.33 2.53 16 15 C -0.14 -2.47 6.16 -25.53 -0.16 -2.63 16 16 C -0.12 -2.16 6.16 -25.54 -0.16 -2.32 16 17 C 0.13 2.55 4.32 -65.67 -0.28 2.26 16 18 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 19 C 0.10 1.88 5.92 -3.25 -0.02 1.86 16 20 N -0.58 -13.13 2.80 -152.26 -0.43 -13.55 16 21 C -0.23 -5.69 10.37 -15.06 -0.16 -5.84 16 22 H 0.08 1.88 7.85 -52.48 -0.41 1.47 16 23 C 0.00 -0.03 5.41 -17.43 -0.09 -0.12 16 24 N -0.92 -23.56 10.42 55.49 0.58 -22.99 16 25 Si 0.91 20.48 29.57 -169.99 -5.03 15.45 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 C 0.20 2.85 10.90 -16.78 -0.18 2.67 16 30 N -0.52 -7.27 8.98 -10.40 -0.09 -7.36 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.73 8.01 -51.93 -0.42 0.31 16 34 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.07 0.77 8.01 -51.93 -0.42 0.35 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.18 2.78 5.63 -52.49 -0.30 2.49 16 41 H 0.09 1.92 7.47 -51.93 -0.39 1.53 16 42 H 0.06 1.09 4.73 -51.93 -0.25 0.84 16 43 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 45 H 0.06 0.96 7.84 -51.93 -0.41 0.56 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.08 1.38 7.08 -51.92 -0.37 1.01 16 49 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 50 H 0.18 2.23 8.01 -52.49 -0.42 1.81 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -27.50 387.54 -9.70 -37.20 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.88 Total: 5.14 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -2.29 Total: 9.62 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.43 Total: -62.43 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.50 -9.70 -37.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029605569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.496 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds