Wall clock time and date at job start Wed Apr 1 2020 03:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47238 * 2 1 4 4 C 1.53006 * 109.46920 * 240.00054 * 2 1 3 5 5 C 1.50703 * 109.47355 * 120.00185 * 2 1 3 6 6 N 1.31863 * 118.94977 * 59.99484 * 5 2 1 7 7 C 1.32152 * 120.96668 * 180.02562 * 6 5 2 8 8 C 1.39949 * 118.92018 * 359.97438 * 7 6 5 9 9 C 1.47838 * 120.93662 * 180.02562 * 8 7 6 10 10 O 1.21549 * 120.00004 * 211.51212 * 9 8 7 11 11 N 1.34774 * 119.99908 * 31.51711 * 9 8 7 12 12 C 1.47166 * 120.71117 * 5.56270 * 11 9 8 13 13 C 1.54483 * 108.00524 * 132.68113 * 12 11 9 14 14 H 1.09001 * 112.35250 * 181.98825 * 13 12 11 15 15 C 1.54553 * 107.85226 * 306.77014 * 13 12 11 16 16 C 1.53735 * 104.95515 * 88.86193 * 15 13 12 17 17 C 1.54546 * 104.95323 * 359.97438 * 16 15 13 18 18 H 1.08999 * 112.68298 * 146.56713 * 17 16 15 19 19 C 1.47158 * 120.71071 * 185.58976 * 11 9 8 20 20 N 1.48303 * 106.89929 * 58.48985 * 13 12 11 21 21 C 1.36933 * 128.07607 * 106.80227 * 20 13 12 22 22 H 1.08003 * 120.00203 * 164.56093 * 21 20 13 23 23 C 1.38811 * 120.00090 * 344.56404 * 21 20 13 24 24 N 1.31619 * 119.99791 * 349.94108 * 23 21 20 25 25 Si 1.86797 * 120.00276 * 169.94857 * 23 21 20 26 26 H 1.48502 * 109.47095 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.46838 * 299.99413 * 25 23 21 28 28 H 1.48498 * 109.47521 * 59.99606 * 25 23 21 29 29 C 1.39949 * 118.12248 * 0.28206 * 8 7 6 30 30 N 1.31864 * 118.94969 * 240.01930 * 5 2 1 31 31 H 1.09005 * 109.46595 * 300.00030 * 1 2 3 32 32 H 1.09001 * 109.47077 * 59.99838 * 1 2 3 33 33 H 1.08994 * 109.47282 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47175 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46814 * 299.99895 * 3 2 1 36 36 H 1.08997 * 109.47201 * 60.00148 * 3 2 1 37 37 H 1.09002 * 109.46833 * 299.99776 * 4 2 1 38 38 H 1.09004 * 109.46782 * 59.99798 * 4 2 1 39 39 H 1.08996 * 109.47204 * 179.97438 * 4 2 1 40 40 H 1.07994 * 120.54078 * 179.97438 * 7 6 5 41 41 H 1.08999 * 109.75264 * 252.41920 * 12 11 9 42 42 H 1.09006 * 109.74958 * 13.15084 * 12 11 9 43 43 H 1.09009 * 110.36011 * 207.57556 * 15 13 12 44 44 H 1.08999 * 110.36705 * 329.77987 * 15 13 12 45 45 H 1.09002 * 110.41427 * 241.06475 * 16 15 13 46 46 H 1.08999 * 110.20932 * 118.81824 * 16 15 13 47 47 H 1.08998 * 109.75487 * 107.58086 * 19 11 9 48 48 H 1.09007 * 109.78715 * 346.87776 * 19 11 9 49 49 H 0.97003 * 120.00278 * 179.97438 * 24 23 21 50 50 H 1.07997 * 120.53450 * 179.70226 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0325 -0.7105 1.2304 6 7 1.7012 -1.9729 1.4185 7 6 2.1192 -2.6341 2.4837 8 6 2.9250 -1.9730 3.4176 9 6 3.4178 -2.6699 4.6246 10 8 3.5943 -2.0498 5.6550 11 7 3.6715 -3.9929 4.5825 12 6 3.5806 -4.7356 3.3152 13 6 4.8478 -5.6092 3.1818 14 1 4.8701 -6.1669 2.2455 15 6 6.0777 -4.6898 3.3573 16 6 6.3555 -4.6832 4.8693 17 6 5.2694 -5.5985 5.4784 18 1 5.6235 -6.1483 6.3504 19 6 4.0447 -4.7258 5.8027 20 7 4.8833 -6.5009 4.3662 21 6 4.6253 -7.8447 4.4196 22 1 4.9246 -8.4181 5.2845 23 6 3.9792 -8.4699 3.3620 24 7 3.4396 -7.7493 2.4019 25 14 3.8755 -10.3341 3.3015 26 1 3.1399 -10.7495 2.0803 27 1 5.2459 -10.9054 3.2729 28 1 3.1578 -10.8292 4.5036 29 6 3.2465 -0.6319 3.1793 30 7 2.7889 -0.0497 2.0849 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6768 1.9563 0.8900 37 1 1.6767 -1.7490 -1.2492 38 1 1.6766 -0.2074 -2.1393 39 1 3.1300 -0.7209 -1.2496 40 1 1.8434 -3.6678 2.6310 41 1 2.6936 -5.3690 3.3222 42 1 3.5278 -4.0358 2.4811 43 1 6.9343 -5.0955 2.8189 44 1 5.8519 -3.6830 3.0060 45 1 6.2665 -3.6725 5.2678 46 1 7.3481 -5.0856 5.0715 47 1 3.2157 -5.3580 6.1209 48 1 4.2948 -4.0202 6.5951 49 1 2.9884 -8.1862 1.6626 50 1 3.8617 -0.0829 3.8768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029605569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:45 Heat of formation + Delta-G solvation = 41.226172 kcal Electronic energy + Delta-G solvation = -31753.063978 eV Core-core repulsion = 27781.035039 eV Total energy + Delta-G solvation = -3972.028938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.66573 -41.39398 -39.41640 -37.67074 -35.71853 -34.91153 -34.31961 -32.99061 -31.85809 -31.07545 -28.26970 -28.17701 -28.16185 -26.38565 -26.04033 -25.18983 -24.95247 -21.98737 -21.32675 -20.99330 -20.47692 -19.24062 -18.70853 -17.65925 -17.51694 -17.12945 -17.04793 -16.46941 -16.15072 -15.62606 -15.53632 -15.19779 -14.91342 -14.83848 -14.67860 -14.56833 -14.51585 -14.36880 -13.57948 -13.37406 -13.32114 -13.16722 -13.09693 -12.93423 -12.78506 -12.69516 -12.59188 -12.54632 -12.13740 -12.04266 -12.02441 -11.93994 -11.84290 -11.81075 -11.52055 -11.46544 -11.17623 -11.06913 -10.72447 -10.51508 -10.39000 -9.81392 -8.72097 -7.85987 -5.19925 -0.64965 -0.11713 1.51154 1.52747 1.58047 1.60692 1.90890 2.51385 2.58280 2.67806 2.93589 3.28453 3.34641 3.39117 3.46717 3.77956 3.84875 4.01089 4.01253 4.06798 4.09431 4.18543 4.26833 4.29157 4.36835 4.49832 4.59090 4.68279 4.78888 4.79337 4.81095 4.89834 4.90324 4.95921 5.00634 5.01055 5.02487 5.03627 5.06996 5.16296 5.26025 5.32201 5.33428 5.37868 5.50915 5.51353 5.57829 5.74575 5.75999 6.21167 6.38958 6.87763 6.98661 7.07247 7.71961 8.50726 9.25858 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.003458 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.833309 B = 8094.531034 C = 9365.344668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.006 4.006 3 C -0.122 4.122 4 C -0.133 4.133 5 C 0.335 3.665 6 N -0.523 5.523 7 C 0.183 3.817 8 C -0.249 4.249 9 C 0.567 3.433 10 O -0.572 6.572 11 N -0.581 5.581 12 C 0.112 3.888 13 C 0.164 3.836 14 H 0.088 0.912 15 C -0.127 4.127 16 C -0.113 4.113 17 C 0.130 3.870 18 H 0.089 0.911 19 C 0.108 3.892 20 N -0.602 5.602 21 C -0.236 4.236 22 H 0.076 0.924 23 C -0.046 4.046 24 N -0.932 5.932 25 Si 0.967 3.033 26 H -0.296 1.296 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.206 3.794 30 N -0.519 5.519 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.047 0.953 40 H 0.178 0.822 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.089 0.911 49 H 0.250 0.750 50 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 15.444 -4.787 16.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 C -0.180 4.180 4 C -0.191 4.191 5 C 0.069 3.931 6 N -0.236 5.236 7 C 0.017 3.983 8 C -0.256 4.256 9 C 0.354 3.646 10 O -0.453 6.453 11 N -0.311 5.311 12 C -0.012 4.012 13 C 0.056 3.944 14 H 0.106 0.894 15 C -0.166 4.166 16 C -0.152 4.152 17 C 0.023 3.977 18 H 0.107 0.893 19 C -0.016 4.016 20 N -0.323 5.323 21 C -0.365 4.365 22 H 0.094 0.906 23 C -0.241 4.241 24 N -0.579 5.579 25 Si 0.797 3.203 26 H -0.223 1.223 27 H -0.211 1.211 28 H -0.209 1.209 29 C 0.039 3.961 30 N -0.231 5.231 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.195 0.805 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.108 0.892 49 H 0.059 0.941 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.059 15.972 -5.181 16.918 hybrid contribution 0.087 -2.017 0.923 2.220 sum -1.972 13.956 -4.259 14.724 Atomic orbital electron populations 1.21832 0.91432 1.02664 1.03059 1.19674 0.97097 0.95647 0.88350 1.21685 1.01284 0.92384 1.02631 1.21840 1.00655 1.00689 0.95921 1.24044 0.87324 0.86961 0.94814 1.68336 1.24012 1.09868 1.21410 1.23971 0.87900 0.99924 0.86535 1.21641 1.06397 0.98447 0.99119 1.17973 0.77699 0.81697 0.87196 1.90716 1.55507 1.66182 1.32910 1.48068 1.65466 1.06924 1.10684 1.22817 1.01305 0.93798 0.83327 1.21913 0.90552 0.88773 0.93127 0.89383 1.22430 0.98723 0.98691 0.96763 1.22290 0.98635 0.98919 0.95326 1.22162 0.92588 0.90375 0.92589 0.89308 1.22313 0.98470 0.94678 0.86154 1.45323 1.79835 1.03895 1.03288 1.19217 1.30625 0.82813 1.03855 0.90616 1.25403 0.99021 1.01228 0.98456 1.69943 1.40453 1.34519 1.12969 0.85338 0.77236 0.81243 0.76495 1.22252 1.21081 1.20882 1.23653 0.90974 0.89468 0.92021 1.68460 1.12264 1.38741 1.03683 0.93269 0.88910 0.92475 0.92684 0.89863 0.92631 0.92516 0.88919 0.93336 0.80490 0.92002 0.90412 0.92437 0.92340 0.91599 0.91396 0.92980 0.89233 0.94106 0.79173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.37 71.98 0.60 -1.65 16 2 C -0.01 -0.11 0.92 -52.92 -0.05 -0.16 16 3 C -0.12 -1.99 7.66 71.98 0.55 -1.44 16 4 C -0.13 -2.37 8.37 71.98 0.60 -1.77 16 5 C 0.33 8.75 6.25 138.71 0.87 9.62 16 6 N -0.52 -15.17 9.77 -186.80 -1.82 -17.00 16 7 C 0.18 5.54 8.72 85.06 0.74 6.28 16 8 C -0.25 -7.55 5.38 -19.91 -0.11 -7.66 16 9 C 0.57 19.51 7.47 86.78 0.65 20.16 16 10 O -0.57 -21.76 16.28 -3.87 -0.06 -21.82 16 11 N -0.58 -20.77 2.25 -817.31 -1.84 -22.62 16 12 C 0.11 4.25 4.08 86.76 0.35 4.61 16 13 C 0.16 6.91 3.17 45.68 0.14 7.06 16 14 H 0.09 4.32 6.39 -2.39 -0.02 4.31 16 15 C -0.13 -4.49 6.16 31.37 0.19 -4.30 16 16 C -0.11 -3.74 6.16 31.37 0.19 -3.54 16 17 C 0.13 4.86 4.32 45.45 0.20 5.05 16 18 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 19 C 0.11 3.91 5.92 86.54 0.51 4.42 16 20 N -0.60 -27.25 2.80 -635.63 -1.78 -29.03 16 21 C -0.24 -11.95 10.37 84.03 0.87 -11.08 16 22 H 0.08 3.74 7.85 -2.91 -0.02 3.72 16 23 C -0.05 -2.37 5.41 84.86 0.46 -1.91 16 24 N -0.93 -49.26 10.42 21.65 0.23 -49.03 16 25 Si 0.97 42.68 29.57 68.60 2.03 44.70 16 26 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 29 C 0.21 5.59 10.90 85.06 0.93 6.52 16 30 N -0.52 -13.74 8.98 -186.80 -1.68 -15.41 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.12 8.01 -2.39 -0.02 1.10 16 34 H 0.05 0.99 8.04 -2.39 -0.02 0.97 16 35 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 37 H 0.06 1.17 8.01 -2.39 -0.02 1.15 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.18 5.53 5.63 -2.91 -0.02 5.51 16 41 H 0.06 2.73 7.47 -2.39 -0.02 2.71 16 42 H 0.08 2.72 4.73 -2.38 -0.01 2.71 16 43 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.06 1.93 7.85 -2.39 -0.02 1.91 16 45 H 0.07 2.08 7.84 -2.39 -0.02 2.06 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.09 3.05 7.08 -2.38 -0.02 3.04 16 49 H 0.25 13.10 8.31 -92.71 -0.77 12.32 16 50 H 0.19 4.48 8.01 -2.91 -0.02 4.45 16 Total: -1.00 -58.54 387.54 3.71 -54.83 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.94 Total: 25.18 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 7.71 Total: 30.20 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -6.90 Total: -133.09 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -58.54 3.71 -54.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029605569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.054 kcal (2) G-P(sol) polarization free energy of solvation -58.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds