Wall clock time and date at job start Wed Apr 1 2020 03:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47357 * 2 1 4 4 N 1.31797 * 119.11863 * 89.99592 * 3 2 1 5 5 C 1.32338 * 120.81248 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.44474 * 179.97438 * 5 4 3 7 7 C 1.38595 * 119.10532 * 0.02562 * 5 4 3 8 8 C 1.50700 * 120.79897 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47373 * 90.00248 * 8 7 5 10 10 O 1.21287 * 119.99604 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00366 * 180.02562 * 9 8 7 12 12 C 1.47869 * 126.93872 * 0.02562 * 11 9 8 13 13 C 1.56027 * 105.09884 * 181.98173 * 12 11 9 14 14 H 1.09006 * 116.24602 * 158.83511 * 13 12 11 15 15 C 1.57081 * 99.60883 * 32.80010 * 13 12 11 16 16 C 1.49290 * 126.94652 * 179.70404 * 11 9 8 17 17 H 1.09000 * 116.14899 * 16.72874 * 16 11 9 18 18 C 1.56014 * 104.09419 * 246.71921 * 16 11 9 19 19 N 1.49257 * 105.36773 * 288.93851 * 18 16 11 20 20 C 1.36937 * 127.74882 * 182.18498 * 19 18 16 21 21 H 1.08002 * 119.99853 * 173.16712 * 20 19 18 22 22 C 1.38810 * 120.00135 * 353.16814 * 20 19 18 23 23 N 1.31617 * 120.00118 * 6.24107 * 22 20 19 24 24 Si 1.86799 * 119.99900 * 186.24338 * 22 20 19 25 25 H 1.48501 * 109.47079 * 94.98387 * 24 22 20 26 26 H 1.48502 * 109.47148 * 214.98544 * 24 22 20 27 27 H 1.48499 * 109.47025 * 334.98605 * 24 22 20 28 28 C 1.38593 * 118.40089 * 0.27523 * 7 5 4 29 29 C 1.50704 * 120.45103 * 179.72704 * 28 7 5 30 30 N 1.31787 * 119.12111 * 269.97583 * 3 2 1 31 31 H 1.08997 * 109.47027 * 300.00625 * 1 2 3 32 32 H 1.09003 * 109.46944 * 59.99388 * 1 2 3 33 33 H 1.09000 * 109.47319 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47027 * 239.99375 * 2 1 3 35 35 H 1.09006 * 109.46352 * 120.00172 * 2 1 3 36 36 H 1.08998 * 109.47289 * 270.02007 * 6 5 4 37 37 H 1.09006 * 109.47057 * 30.02561 * 6 5 4 38 38 H 1.09003 * 109.46904 * 150.02317 * 6 5 4 39 39 H 1.09000 * 109.47043 * 210.00280 * 8 7 5 40 40 H 1.09001 * 109.46935 * 330.00098 * 8 7 5 41 41 H 1.09005 * 110.31649 * 300.88138 * 12 11 9 42 42 H 1.08990 * 110.32212 * 62.97338 * 12 11 9 43 43 H 1.09001 * 112.36596 * 64.27650 * 15 13 12 44 44 H 1.09001 * 112.36982 * 191.62246 * 15 13 12 45 45 H 1.09004 * 110.31585 * 47.67724 * 18 16 11 46 46 H 1.09000 * 110.31616 * 169.75889 * 18 16 11 47 47 H 0.96998 * 120.00197 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.47458 * 89.99409 * 29 28 7 49 49 H 1.09001 * 109.47370 * 210.00322 * 29 28 7 50 50 H 1.09002 * 109.46329 * 329.99367 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2462 2.0255 1.1514 5 6 2.6876 3.2725 1.1905 6 6 2.9286 3.9561 2.5117 7 6 2.9243 3.9415 0.0000 8 6 3.4278 5.3619 0.0000 9 6 4.9348 5.3608 -0.0006 10 8 5.5403 4.3099 -0.0005 11 7 5.6096 6.5274 -0.0002 12 6 5.0315 7.8884 0.0014 13 6 6.2582 8.8511 -0.0509 14 1 6.0631 9.8614 -0.4105 15 6 7.2403 7.9779 -0.9113 16 6 7.0917 6.7067 0.0055 17 1 7.6822 5.8336 -0.2720 18 6 7.3913 7.3489 1.3954 19 7 6.8637 8.7424 1.3094 20 6 6.9246 9.7223 2.2639 21 1 6.5989 10.7251 2.0300 22 6 7.4051 9.4269 3.5323 23 7 7.9159 8.2399 3.7825 24 14 7.3266 10.7138 4.8840 25 1 6.0955 10.5113 5.6893 26 1 8.5184 10.5844 5.7605 27 1 7.3036 12.0687 4.2767 28 6 2.6818 3.2745 -1.1904 29 6 2.9174 3.9601 -2.5117 30 7 2.2467 2.0253 -1.1513 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.0179 4.4636 2.8297 37 1 3.2109 3.2140 3.2586 38 1 3.7316 4.6851 2.4024 39 1 3.0645 5.8761 -0.8897 40 1 3.0652 5.8759 0.8902 41 1 4.3999 8.0323 -0.8753 42 1 4.4567 8.0545 0.9125 43 1 6.8686 7.8097 -1.9221 44 1 8.2559 8.3736 -0.9111 45 1 6.8749 6.8019 2.1843 46 1 8.4649 7.3597 1.5838 47 1 8.2513 8.0333 4.6689 48 1 3.9429 3.7825 -2.8354 49 1 2.2273 3.5621 -3.2557 50 1 2.7522 5.0316 -2.3994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032528344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:26 Heat of formation + Delta-G solvation = 57.838401 kcal Electronic energy + Delta-G solvation = -30982.058849 eV Core-core repulsion = 27010.750271 eV Total energy + Delta-G solvation = -3971.308578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.38622 -40.03070 -37.99192 -35.34902 -34.82255 -33.64122 -32.56413 -31.56554 -29.53997 -29.46156 -28.76014 -28.49396 -26.79670 -25.26936 -24.45986 -23.35606 -21.76579 -21.42106 -20.41341 -19.89334 -18.48068 -18.10760 -17.32170 -16.43037 -15.94156 -15.72833 -15.26687 -15.20807 -14.69133 -14.27575 -14.19484 -13.97069 -13.68659 -13.57561 -13.50613 -13.20247 -13.05718 -12.99285 -12.64969 -12.32357 -12.25027 -12.08899 -11.99787 -11.84571 -11.73149 -11.62595 -11.40778 -11.26258 -11.08519 -10.94417 -10.85211 -10.71386 -10.62175 -10.32471 -10.20662 -10.12355 -9.72322 -9.62105 -9.17319 -9.00503 -8.74996 -8.08455 -6.98375 -5.84235 -3.17695 0.88958 1.11176 2.93799 3.28218 3.33213 3.38237 3.41233 3.71666 3.80649 4.00717 4.36138 4.36418 4.65405 4.74538 4.77057 4.93400 4.99175 5.09514 5.11039 5.13389 5.23706 5.27125 5.31110 5.40746 5.45127 5.49752 5.51997 5.54628 5.56749 5.61647 5.66438 5.68388 5.74923 5.81669 5.85042 5.96542 6.01371 6.06593 6.10842 6.21040 6.33818 6.41145 6.50332 6.52376 6.61286 7.07995 7.31004 7.41998 7.63948 7.99227 8.02724 8.16166 8.50276 9.01364 9.64490 10.34970 11.29137 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002815 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.257121 B = 9945.345333 C =10913.422653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C 0.320 3.680 4 N -0.522 5.522 5 C 0.196 3.804 6 C -0.110 4.110 7 C -0.170 4.170 8 C -0.093 4.093 9 C 0.530 3.470 10 O -0.549 6.549 11 N -0.605 5.605 12 C 0.082 3.918 13 C 0.140 3.860 14 H 0.105 0.895 15 C -0.152 4.152 16 C 0.100 3.900 17 H 0.113 0.887 18 C 0.172 3.828 19 N -0.597 5.597 20 C -0.232 4.232 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.190 3.810 29 C -0.108 4.108 30 N -0.524 5.524 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.254 0.746 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.744 -7.840 -10.993 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.092 4.092 3 C 0.052 3.948 4 N -0.237 5.237 5 C 0.051 3.949 6 C -0.168 4.168 7 C -0.175 4.175 8 C -0.133 4.133 9 C 0.318 3.682 10 O -0.428 6.428 11 N -0.339 5.339 12 C -0.043 4.043 13 C 0.031 3.969 14 H 0.123 0.877 15 C -0.192 4.192 16 C -0.002 4.002 17 H 0.131 0.869 18 C 0.047 3.953 19 N -0.321 5.321 20 C -0.360 4.360 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.562 5.562 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.044 3.956 29 C -0.165 4.165 30 N -0.239 5.239 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.698 -9.356 -10.689 19.053 hybrid contribution 0.335 1.534 0.914 1.817 sum -12.362 -7.822 -9.775 17.595 Atomic orbital electron populations 1.21674 0.93740 1.02255 1.02313 1.20301 0.96573 0.88291 1.04031 1.23084 0.91351 0.96997 0.83373 1.68072 1.15356 1.09845 1.30457 1.21534 0.88710 0.89159 0.95528 1.20831 1.02964 1.00743 0.92225 1.20690 1.04169 0.98004 0.94620 1.20550 0.93659 0.93539 1.05589 1.19849 0.88665 0.82738 0.76920 1.90698 1.70187 1.30595 1.51277 1.49223 1.08164 1.05316 1.71206 1.23347 0.98314 0.82394 1.00284 1.23147 0.90354 0.95711 0.87661 0.87737 1.24227 1.01185 0.96801 0.96993 1.24380 0.79892 0.96911 0.99065 0.86901 1.22143 0.98541 0.84312 0.90319 1.45532 1.65932 1.10011 1.10638 1.19025 1.37882 0.89594 0.89507 0.90081 1.24837 1.00797 0.96962 0.97495 1.69912 1.44658 1.20460 1.21207 0.86131 0.77240 0.80441 0.82109 1.21590 1.21763 1.20568 1.21452 0.89416 0.89335 0.95354 1.20808 1.03690 0.99720 0.92265 1.68035 1.15653 1.09684 1.30518 0.92373 0.92436 0.91591 0.89376 0.89324 0.89610 0.89703 0.89862 0.87774 0.87586 0.92798 0.90917 0.91548 0.89846 0.93007 0.93040 0.93541 0.89458 0.90022 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.90 37.16 0.37 -0.87 16 2 C -0.05 -0.56 6.37 -27.88 -0.18 -0.74 16 3 C 0.32 4.60 6.90 -157.20 -1.08 3.51 16 4 N -0.52 -8.06 10.27 -6.99 -0.07 -8.13 16 5 C 0.20 2.97 6.82 -82.24 -0.56 2.41 16 6 C -0.11 -1.46 9.46 36.00 0.34 -1.12 16 7 C -0.17 -2.47 4.41 -104.36 -0.46 -2.93 16 8 C -0.09 -1.21 4.10 -29.03 -0.12 -1.33 16 9 C 0.53 9.00 7.59 -10.99 -0.08 8.91 16 10 O -0.55 -11.35 16.38 5.55 0.09 -11.26 16 11 N -0.61 -10.29 2.95 -156.56 -0.46 -10.75 16 12 C 0.08 1.26 6.00 -1.67 -0.01 1.25 16 13 C 0.14 2.42 5.47 -62.55 -0.34 2.07 16 14 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 15 C -0.15 -2.41 6.84 -22.10 -0.15 -2.56 16 16 C 0.10 1.84 5.25 -62.35 -0.33 1.51 16 17 H 0.11 2.06 8.06 -51.93 -0.42 1.64 16 18 C 0.17 3.94 4.83 -0.90 0.00 3.94 16 19 N -0.60 -13.66 3.07 -155.21 -0.48 -14.13 16 20 C -0.23 -5.94 10.37 -15.06 -0.16 -6.10 16 21 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -26.02 10.74 55.49 0.60 -25.43 16 24 Si 0.91 21.12 29.56 -169.99 -5.02 16.10 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.19 2.68 6.82 -82.24 -0.56 2.12 16 29 C -0.11 -1.15 9.84 36.01 0.35 -0.79 16 30 N -0.52 -7.73 10.27 -6.99 -0.07 -7.80 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.21 6.56 -51.93 -0.34 0.87 16 39 H 0.10 1.07 6.08 -51.93 -0.32 0.75 16 40 H 0.11 1.28 6.82 -51.93 -0.35 0.92 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.05 1.37 7.57 -51.93 -0.39 0.98 16 46 H 0.05 1.31 7.71 -51.93 -0.40 0.91 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.69 6.08 -51.93 -0.32 0.38 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -32.96 400.02 -10.46 -43.42 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.00 Total: 2.86 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -3.07 Total: 9.09 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.49 Total: -66.24 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.96 -10.46 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032528344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.261 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds