Wall clock time and date at job start Wed Apr 1 2020 03:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47357 * 2 1 4 4 N 1.31797 * 119.11863 * 89.99592 * 3 2 1 5 5 C 1.32338 * 120.81248 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.44474 * 179.97438 * 5 4 3 7 7 C 1.38595 * 119.10532 * 0.02562 * 5 4 3 8 8 C 1.50700 * 120.79897 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47373 * 90.00248 * 8 7 5 10 10 O 1.21287 * 119.99604 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00366 * 180.02562 * 9 8 7 12 12 C 1.47869 * 126.93872 * 0.02562 * 11 9 8 13 13 C 1.56027 * 105.09884 * 181.98173 * 12 11 9 14 14 H 1.09006 * 116.24602 * 158.83511 * 13 12 11 15 15 C 1.57081 * 99.60883 * 32.80010 * 13 12 11 16 16 C 1.49290 * 126.94652 * 179.70404 * 11 9 8 17 17 H 1.09000 * 116.14899 * 16.72874 * 16 11 9 18 18 C 1.56014 * 104.09419 * 246.71921 * 16 11 9 19 19 N 1.49257 * 105.36773 * 288.93851 * 18 16 11 20 20 C 1.36937 * 127.74882 * 182.18498 * 19 18 16 21 21 H 1.08002 * 119.99853 * 173.16712 * 20 19 18 22 22 C 1.38810 * 120.00135 * 353.16814 * 20 19 18 23 23 N 1.31617 * 120.00118 * 6.24107 * 22 20 19 24 24 Si 1.86799 * 119.99900 * 186.24338 * 22 20 19 25 25 H 1.48501 * 109.47079 * 94.98387 * 24 22 20 26 26 H 1.48502 * 109.47148 * 214.98544 * 24 22 20 27 27 H 1.48499 * 109.47025 * 334.98605 * 24 22 20 28 28 C 1.38593 * 118.40089 * 0.27523 * 7 5 4 29 29 C 1.50704 * 120.45103 * 179.72704 * 28 7 5 30 30 N 1.31787 * 119.12111 * 269.97583 * 3 2 1 31 31 H 1.08997 * 109.47027 * 300.00625 * 1 2 3 32 32 H 1.09003 * 109.46944 * 59.99388 * 1 2 3 33 33 H 1.09000 * 109.47319 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47027 * 239.99375 * 2 1 3 35 35 H 1.09006 * 109.46352 * 120.00172 * 2 1 3 36 36 H 1.08998 * 109.47289 * 270.02007 * 6 5 4 37 37 H 1.09006 * 109.47057 * 30.02561 * 6 5 4 38 38 H 1.09003 * 109.46904 * 150.02317 * 6 5 4 39 39 H 1.09000 * 109.47043 * 210.00280 * 8 7 5 40 40 H 1.09001 * 109.46935 * 330.00098 * 8 7 5 41 41 H 1.09005 * 110.31649 * 300.88138 * 12 11 9 42 42 H 1.08990 * 110.32212 * 62.97338 * 12 11 9 43 43 H 1.09001 * 112.36596 * 64.27650 * 15 13 12 44 44 H 1.09001 * 112.36982 * 191.62246 * 15 13 12 45 45 H 1.09004 * 110.31585 * 47.67724 * 18 16 11 46 46 H 1.09000 * 110.31616 * 169.75889 * 18 16 11 47 47 H 0.96998 * 120.00197 * 180.02562 * 23 22 20 48 48 H 1.08993 * 109.47458 * 89.99409 * 29 28 7 49 49 H 1.09001 * 109.47370 * 210.00322 * 29 28 7 50 50 H 1.09002 * 109.46329 * 329.99367 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2462 2.0255 1.1514 5 6 2.6876 3.2725 1.1905 6 6 2.9286 3.9561 2.5117 7 6 2.9243 3.9415 0.0000 8 6 3.4278 5.3619 0.0000 9 6 4.9348 5.3608 -0.0006 10 8 5.5403 4.3099 -0.0005 11 7 5.6096 6.5274 -0.0002 12 6 5.0315 7.8884 0.0014 13 6 6.2582 8.8511 -0.0509 14 1 6.0631 9.8614 -0.4105 15 6 7.2403 7.9779 -0.9113 16 6 7.0917 6.7067 0.0055 17 1 7.6822 5.8336 -0.2720 18 6 7.3913 7.3489 1.3954 19 7 6.8637 8.7424 1.3094 20 6 6.9246 9.7223 2.2639 21 1 6.5989 10.7251 2.0300 22 6 7.4051 9.4269 3.5323 23 7 7.9159 8.2399 3.7825 24 14 7.3266 10.7138 4.8840 25 1 6.0955 10.5113 5.6893 26 1 8.5184 10.5844 5.7605 27 1 7.3036 12.0687 4.2767 28 6 2.6818 3.2745 -1.1904 29 6 2.9174 3.9601 -2.5117 30 7 2.2467 2.0253 -1.1513 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8901 36 1 2.0179 4.4636 2.8297 37 1 3.2109 3.2140 3.2586 38 1 3.7316 4.6851 2.4024 39 1 3.0645 5.8761 -0.8897 40 1 3.0652 5.8759 0.8902 41 1 4.3999 8.0323 -0.8753 42 1 4.4567 8.0545 0.9125 43 1 6.8686 7.8097 -1.9221 44 1 8.2559 8.3736 -0.9111 45 1 6.8749 6.8019 2.1843 46 1 8.4649 7.3597 1.5838 47 1 8.2513 8.0333 4.6689 48 1 3.9429 3.7825 -2.8354 49 1 2.2273 3.5621 -3.2557 50 1 2.7522 5.0316 -2.3994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032528344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:25 Heat of formation + Delta-G solvation = 37.962996 kcal Electronic energy + Delta-G solvation = -30982.920712 eV Core-core repulsion = 27010.750271 eV Total energy + Delta-G solvation = -3972.170440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.45677 -41.43475 -39.40628 -36.36776 -35.86431 -35.39336 -33.66428 -33.05270 -30.97771 -30.47679 -30.20062 -29.80795 -27.79559 -26.94675 -25.59454 -24.79771 -22.79056 -22.57380 -21.72476 -21.37806 -19.97242 -19.16323 -18.84480 -17.97845 -17.38687 -16.83765 -16.54111 -16.39196 -16.19160 -15.65429 -15.44315 -15.16107 -14.82819 -14.65533 -14.57949 -14.44832 -14.14935 -13.95217 -13.77053 -13.58604 -13.55118 -13.35005 -13.28582 -13.11857 -12.96178 -12.81927 -12.73699 -12.63409 -12.63078 -12.31833 -12.09853 -12.02548 -12.02017 -11.83220 -11.70787 -11.51090 -11.27292 -11.04683 -10.72365 -10.25863 -10.07054 -9.51714 -8.87528 -7.84976 -5.18553 -0.18189 0.03567 1.48045 1.48637 1.57538 1.62547 1.99991 2.49400 2.63571 2.86498 3.00326 3.34475 3.36407 3.38503 3.58539 3.66323 3.73360 3.88164 3.93608 4.03766 4.08315 4.18769 4.23755 4.29837 4.33645 4.37271 4.48248 4.53452 4.59531 4.63817 4.67144 4.68765 4.75379 4.86939 4.89060 4.93277 4.97055 4.98145 5.04527 5.05363 5.14028 5.17290 5.25870 5.27854 5.45760 5.50703 5.55518 5.65462 6.01653 6.09605 6.68700 7.01709 7.09239 7.17386 7.71653 8.44785 9.27730 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.002815 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.257121 B = 9945.345333 C =10913.422653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C 0.307 3.693 4 N -0.543 5.543 5 C 0.176 3.824 6 C -0.105 4.105 7 C -0.184 4.184 8 C -0.080 4.080 9 C 0.529 3.471 10 O -0.593 6.593 11 N -0.606 5.606 12 C 0.088 3.912 13 C 0.133 3.867 14 H 0.135 0.865 15 C -0.130 4.130 16 C 0.102 3.898 17 H 0.109 0.891 18 C 0.184 3.816 19 N -0.617 5.617 20 C -0.224 4.224 21 H 0.097 0.903 22 C -0.071 4.071 23 N -0.956 5.956 24 Si 0.972 3.028 25 H -0.291 1.291 26 H -0.305 1.305 27 H -0.261 1.261 28 C 0.181 3.819 29 C -0.105 4.105 30 N -0.537 5.537 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.002 0.998 46 H 0.010 0.990 47 H 0.242 0.758 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.124 -6.305 -13.788 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C 0.039 3.961 4 N -0.258 5.258 5 C 0.031 3.969 6 C -0.162 4.162 7 C -0.188 4.188 8 C -0.120 4.120 9 C 0.319 3.681 10 O -0.475 6.475 11 N -0.339 5.339 12 C -0.035 4.035 13 C 0.027 3.973 14 H 0.152 0.848 15 C -0.169 4.169 16 C -0.002 4.002 17 H 0.127 0.873 18 C 0.059 3.941 19 N -0.342 5.342 20 C -0.353 4.353 21 H 0.115 0.885 22 C -0.263 4.263 23 N -0.605 5.605 24 Si 0.802 3.198 25 H -0.219 1.219 26 H -0.233 1.233 27 H -0.185 1.185 28 C 0.035 3.965 29 C -0.162 4.162 30 N -0.252 5.252 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.161 0.839 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.095 0.905 45 H 0.020 0.980 46 H 0.028 0.972 47 H 0.051 0.949 48 H 0.100 0.900 49 H 0.114 0.886 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.120 -7.773 -13.536 21.732 hybrid contribution 1.088 1.021 1.737 2.290 sum -14.032 -6.751 -11.799 19.537 Atomic orbital electron populations 1.21623 0.92199 1.03675 1.01616 1.20454 0.97788 0.86377 1.04615 1.23797 0.90799 0.98299 0.83184 1.68111 1.16345 1.10210 1.31166 1.21871 0.88992 0.89504 0.96492 1.20800 1.03465 1.00231 0.91727 1.20860 1.04613 0.98807 0.94562 1.20547 0.90241 0.93328 1.07911 1.20516 0.90203 0.81837 0.75563 1.90681 1.71451 1.32180 1.53145 1.49281 1.07346 1.06322 1.70966 1.23302 0.97588 0.80515 1.02133 1.23586 0.91069 0.97993 0.84640 0.84790 1.24130 1.00791 0.93912 0.98044 1.24147 0.81386 0.97873 0.96759 0.87319 1.21748 0.95386 0.85042 0.91973 1.45780 1.66427 1.09184 1.12779 1.19514 1.35201 0.90729 0.89873 0.88509 1.25635 1.01959 0.98703 1.00030 1.70150 1.46995 1.22651 1.20711 0.85137 0.76167 0.79194 0.79337 1.21889 1.23272 1.18486 1.22086 0.88407 0.89276 0.96723 1.20916 1.03603 1.00974 0.90678 1.68142 1.16321 1.10225 1.30562 0.93269 0.92830 0.89103 0.88459 0.88991 0.87176 0.90251 0.91511 0.83915 0.86505 0.87184 0.92417 0.87493 0.90513 0.97951 0.97223 0.94853 0.89994 0.88642 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.90 71.98 0.71 -1.44 16 2 C -0.05 -1.09 6.37 29.85 0.19 -0.90 16 3 C 0.31 8.72 6.90 138.75 0.96 9.68 16 4 N -0.54 -16.85 10.27 -176.03 -1.81 -18.66 16 5 C 0.18 5.33 6.82 42.57 0.29 5.62 16 6 C -0.11 -2.83 9.46 71.24 0.67 -2.15 16 7 C -0.18 -5.10 4.41 -19.69 -0.09 -5.19 16 8 C -0.08 -1.88 4.10 29.10 0.12 -1.77 16 9 C 0.53 17.25 7.59 87.66 0.66 17.91 16 10 O -0.59 -24.72 16.38 -3.05 -0.05 -24.77 16 11 N -0.61 -19.49 2.95 -767.63 -2.26 -21.75 16 12 C 0.09 2.38 6.00 87.17 0.52 2.90 16 13 C 0.13 4.15 5.47 46.93 0.26 4.41 16 14 H 0.13 3.43 8.14 -2.38 -0.02 3.41 16 15 C -0.13 -3.70 6.84 33.59 0.23 -3.47 16 16 C 0.10 3.71 5.25 47.06 0.25 3.96 16 17 H 0.11 4.04 8.06 -2.39 -0.02 4.02 16 18 C 0.18 8.85 4.83 86.89 0.42 9.27 16 19 N -0.62 -28.06 3.07 -644.97 -1.98 -30.04 16 20 C -0.22 -11.41 10.37 84.03 0.87 -10.54 16 21 H 0.10 4.52 7.84 -2.91 -0.02 4.50 16 22 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 23 N -0.96 -57.31 10.74 21.65 0.23 -57.08 16 24 Si 0.97 44.22 29.56 68.60 2.03 46.25 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.31 -14.44 7.11 99.48 0.71 -13.73 16 27 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 28 C 0.18 4.80 6.82 42.57 0.29 5.09 16 29 C -0.10 -1.91 9.84 71.24 0.70 -1.21 16 30 N -0.54 -15.36 10.27 -176.02 -1.81 -17.17 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 2.00 6.56 -2.39 -0.02 1.98 16 39 H 0.14 2.20 6.08 -2.39 -0.01 2.18 16 40 H 0.12 2.53 6.82 -2.39 -0.02 2.52 16 41 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.00 0.13 7.57 -2.39 -0.02 0.11 16 46 H 0.01 0.53 7.71 -2.39 -0.02 0.51 16 47 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.10 1.33 6.08 -2.39 -0.01 1.31 16 Total: -1.00 -77.52 400.02 2.81 -74.70 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.94 Total: 19.73 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 7.53 Total: 28.78 kcal Atomic # 7 Polarization: -137.07 SS G_CDS: -7.63 Total: -144.70 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.52 2.81 -74.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032528344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.665 kcal (2) G-P(sol) polarization free energy of solvation -77.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds