Wall clock time and date at job start Wed Apr 1 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31884 * 118.95277 * 2 1 4 4 C 1.32139 * 120.96999 * 179.97438 * 3 2 1 5 5 C 1.39970 * 118.91664 * 359.74492 * 4 3 2 6 6 C 1.47833 * 120.93589 * 180.25279 * 5 4 3 7 7 O 1.21552 * 120.00061 * 186.65597 * 6 5 4 8 8 N 1.34777 * 120.00310 * 6.65543 * 6 5 4 9 9 C 1.46501 * 120.00089 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.32707 * 35.00590 * 9 8 6 11 11 C 1.47094 * 109.32412 * 154.65276 * 9 8 6 12 12 C 1.52574 * 114.32637 * 183.05809 * 11 9 8 13 13 C 1.50883 * 109.35617 * 274.98697 * 12 11 9 14 14 C 1.53951 * 110.09384 * 91.88655 * 13 12 11 15 15 N 1.47599 * 112.14393 * 319.43630 * 14 13 12 16 16 C 1.36936 * 118.64597 * 137.86267 * 15 14 13 17 17 H 1.07996 * 120.00345 * 210.89618 * 16 15 14 18 18 C 1.38814 * 119.99962 * 30.90581 * 16 15 14 19 19 N 1.31624 * 119.99848 * 10.86987 * 18 16 15 20 20 Si 1.86793 * 120.00142 * 190.87334 * 18 16 15 21 21 H 1.48503 * 109.47283 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47042 * 119.99949 * 20 18 16 23 23 H 1.48500 * 109.47512 * 239.99710 * 20 18 16 24 24 C 1.44660 * 122.54103 * 317.85784 * 15 14 13 25 25 C 1.39933 * 118.12468 * 0.49035 * 5 4 3 26 26 C 1.50703 * 120.53643 * 179.78522 * 25 5 4 27 27 C 1.52994 * 117.51360 * 178.41654 * 26 25 5 28 28 C 1.53001 * 60.00210 * 107.47973 * 27 26 25 29 29 N 1.31849 * 118.95279 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47466 * 270.02913 * 1 2 3 31 31 H 1.09004 * 109.46801 * 30.02645 * 1 2 3 32 32 H 1.09003 * 109.46733 * 150.02432 * 1 2 3 33 33 H 1.07993 * 120.53984 * 179.97438 * 4 3 2 34 34 H 0.97008 * 119.99653 * 0.02562 * 8 6 5 35 35 H 1.08993 * 108.51899 * 304.31614 * 11 9 8 36 36 H 1.09006 * 108.51289 * 61.96897 * 11 9 8 37 37 H 1.09002 * 109.48494 * 34.94815 * 12 11 9 38 38 H 1.08999 * 109.49178 * 155.01772 * 12 11 9 39 39 H 1.08993 * 109.36206 * 212.07846 * 13 12 11 40 40 H 1.08999 * 109.36734 * 331.82329 * 13 12 11 41 41 H 1.09007 * 108.94586 * 80.11876 * 14 13 12 42 42 H 1.08996 * 108.94583 * 198.74724 * 14 13 12 43 43 H 0.96999 * 119.99782 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.61736 * 330.83665 * 24 15 14 45 45 H 1.09008 * 109.32652 * 210.89866 * 24 15 14 46 46 H 1.08993 * 115.54965 * 32.71344 * 26 25 5 47 47 H 1.08997 * 117.49875 * 214.96593 * 27 26 25 48 48 H 1.08997 * 117.50574 * 359.97438 * 27 26 25 49 49 H 1.09003 * 117.49843 * 252.50957 * 28 27 26 50 50 H 1.09002 * 117.50043 * 107.48519 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2005 0.0005 5 6 4.1855 -0.0001 0.0065 6 6 5.6638 -0.0001 0.0129 7 8 6.2721 -1.0460 -0.1040 8 7 6.3372 1.1595 0.1483 9 6 7.8022 1.1594 0.1552 10 1 8.1661 0.3891 -0.5248 11 6 8.2912 2.4730 -0.2908 12 6 9.8098 2.5754 -0.3970 13 6 10.3831 2.9251 0.9541 14 6 10.7448 1.6416 1.7235 15 7 9.7281 0.5854 1.5526 16 6 10.1470 -0.7030 1.3532 17 1 9.5508 -1.3788 0.7580 18 6 11.3380 -1.1405 1.9162 19 7 11.9556 -0.3973 2.8099 20 14 12.0643 -2.7839 1.4054 21 1 11.1837 -3.4214 0.3937 22 1 13.4135 -2.5693 0.8232 23 1 12.1730 -3.6679 2.5937 24 6 8.3080 0.8592 1.5878 25 6 3.4661 -1.2003 0.0011 26 6 4.1857 -2.5244 0.0023 27 6 3.3313 -3.7931 0.0337 28 6 4.0638 -3.3957 -1.2494 29 7 2.1452 -1.1537 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 3.9817 2.1494 0.0001 34 1 5.8518 1.9941 0.2420 35 1 7.8606 2.6890 -1.2684 36 1 7.9441 3.2289 0.4137 37 1 10.2163 1.6199 -0.7283 38 1 10.0726 3.3517 -1.1156 39 1 11.2792 3.5311 0.8206 40 1 9.6460 3.4905 1.5243 41 1 11.7042 1.2710 1.3625 42 1 10.8347 1.8780 2.7837 43 1 12.7876 -0.7033 3.2036 44 1 8.1172 1.7204 2.2281 45 1 7.7827 -0.0102 1.9835 46 1 5.1346 -2.5432 0.5382 47 1 3.7181 -4.6468 0.5902 48 1 2.2484 -3.6704 0.0540 49 1 3.4628 -3.0114 -2.0736 50 1 4.9326 -3.9878 -1.5370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034507407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:54 Heat of formation + Delta-G solvation = 61.082814 kcal Electronic energy + Delta-G solvation = -30913.186873 eV Core-core repulsion = 26942.018983 eV Total energy + Delta-G solvation = -3971.167890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56733 -39.53006 -37.78161 -37.20376 -34.65503 -33.84406 -33.25251 -33.10344 -30.93712 -30.30905 -28.84442 -26.08067 -25.50871 -24.46186 -23.81069 -22.97791 -22.31963 -21.16280 -20.65570 -20.19134 -19.18746 -17.95964 -17.61490 -16.58795 -16.51701 -15.79882 -15.72493 -15.24528 -15.01164 -14.77099 -14.35878 -14.14756 -13.99819 -13.59634 -13.56792 -13.15845 -12.89442 -12.78380 -12.67760 -12.53958 -12.11741 -12.03792 -11.77426 -11.59967 -11.57385 -11.42340 -11.05006 -10.93892 -10.81519 -10.58700 -10.55159 -10.29734 -10.14687 -10.12526 -9.75012 -9.64508 -9.58526 -9.49547 -9.45607 -9.41038 -8.86092 -8.35290 -6.57316 -5.74388 -3.23521 0.27572 0.78203 2.87859 3.19823 3.40188 3.48288 3.49989 3.52893 3.58692 3.72817 3.91601 4.15708 4.53415 4.58289 4.72354 4.85629 4.97513 5.00302 5.07819 5.21090 5.22001 5.24607 5.34256 5.44134 5.51864 5.53954 5.63302 5.66835 5.73203 5.84658 5.96673 6.00652 6.10040 6.11945 6.13485 6.24172 6.29855 6.36669 6.58171 6.60049 6.66219 6.68987 6.75286 6.81955 6.91405 7.07938 7.45027 7.65601 7.73477 7.80715 7.92073 8.37953 8.54830 9.29342 9.92468 10.38704 11.32954 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.003284 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.981620 B = 8524.960541 C =10249.088282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.334 3.666 3 N -0.528 5.528 4 C 0.185 3.815 5 C -0.239 4.239 6 C 0.562 3.438 7 O -0.510 6.510 8 N -0.716 5.716 9 C 0.115 3.885 10 H 0.091 0.909 11 C -0.113 4.113 12 C -0.100 4.100 13 C -0.144 4.144 14 C 0.177 3.823 15 N -0.583 5.583 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.007 3.993 19 N -0.906 5.906 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.158 3.842 25 C 0.269 3.731 26 C -0.122 4.122 27 C -0.164 4.164 28 C -0.147 4.147 29 N -0.522 5.522 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.171 0.829 34 H 0.389 0.611 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.252 0.748 44 H 0.031 0.969 45 H 0.048 0.952 46 H 0.153 0.847 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.089 0.911 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 4.539 -6.914 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 N -0.243 5.243 4 C 0.018 3.982 5 C -0.246 4.246 6 C 0.346 3.654 7 O -0.385 6.385 8 N -0.367 5.367 9 C 0.009 3.991 10 H 0.109 0.891 11 C -0.151 4.151 12 C -0.138 4.138 13 C -0.183 4.183 14 C 0.052 3.948 15 N -0.303 5.303 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.191 4.191 19 N -0.550 5.550 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.028 3.972 25 C 0.123 3.877 26 C -0.140 4.140 27 C -0.201 4.201 28 C -0.185 4.185 29 N -0.236 5.236 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.188 0.812 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.171 0.829 47 H 0.117 0.883 48 H 0.123 0.877 49 H 0.108 0.892 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.368 3.770 -6.883 20.898 hybrid contribution 1.180 -0.118 -0.113 1.191 sum -18.188 3.652 -6.996 19.827 Atomic orbital electron populations 1.20615 0.85409 1.04323 1.04122 1.23451 0.98352 0.83307 0.88114 1.68257 1.09669 1.30139 1.16232 1.23435 0.89622 0.97613 0.87515 1.21680 0.96722 0.95860 1.10382 1.17653 0.85387 0.84646 0.77670 1.90795 1.68927 1.30460 1.48356 1.46095 1.08497 1.08157 1.73912 1.21335 0.76152 0.98479 1.03143 0.89121 1.20590 0.97649 0.96801 1.00047 1.20824 0.93544 1.02015 0.97436 1.22091 0.99564 1.00259 0.96391 1.21039 0.92787 0.84791 0.96167 1.43561 0.98613 1.04560 1.83605 1.19313 1.05618 0.88248 1.25430 0.91396 1.25148 0.99853 0.97676 0.96444 1.70047 1.18422 1.37978 1.28588 0.86242 0.78836 0.83907 0.77987 1.20062 1.21666 1.21719 1.20934 0.86630 0.98292 0.91333 1.21003 0.88222 0.93969 0.84519 1.21400 1.01290 0.85900 1.05441 1.23013 0.99456 0.97002 1.00625 1.22862 1.02853 1.01653 0.91087 1.68089 1.09166 1.30062 1.16316 0.89290 0.89411 0.89445 0.81165 0.77731 0.93377 0.92781 0.90443 0.93374 0.92914 0.93687 0.90964 0.95644 0.93802 0.95062 0.93323 0.82941 0.88304 0.87703 0.89221 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.31 36.00 0.37 -0.26 16 2 C 0.33 3.80 7.64 -157.07 -1.20 2.60 16 3 N -0.53 -6.13 10.32 -10.39 -0.11 -6.24 16 4 C 0.19 2.05 10.80 -16.77 -0.18 1.87 16 5 C -0.24 -3.21 5.91 -104.69 -0.62 -3.83 16 6 C 0.56 8.74 7.70 -12.33 -0.09 8.65 16 7 O -0.51 -9.79 13.20 5.32 0.07 -9.72 16 8 N -0.72 -9.89 5.01 -56.57 -0.28 -10.18 16 9 C 0.11 1.96 2.34 -69.78 -0.16 1.80 16 10 H 0.09 1.86 7.57 -51.93 -0.39 1.47 16 11 C -0.11 -1.65 4.55 -29.78 -0.14 -1.79 16 12 C -0.10 -1.64 5.51 -28.01 -0.15 -1.79 16 13 C -0.14 -2.56 5.71 -27.30 -0.16 -2.72 16 14 C 0.18 4.09 4.64 -2.94 -0.01 4.08 16 15 N -0.58 -14.13 2.26 -172.03 -0.39 -14.52 16 16 C -0.26 -7.01 9.42 -15.06 -0.14 -7.15 16 17 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 18 C 0.01 0.20 4.97 -17.43 -0.09 0.12 16 19 N -0.91 -26.13 11.03 55.49 0.61 -25.51 16 20 Si 0.90 22.09 29.57 -169.99 -5.03 17.06 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.16 3.27 5.24 -4.04 -0.02 3.25 16 25 C 0.27 3.75 6.53 -81.81 -0.53 3.21 16 26 C -0.12 -1.69 4.81 -91.77 -0.44 -2.14 16 27 C -0.16 -1.87 10.04 -26.73 -0.27 -2.14 16 28 C -0.15 -1.77 10.23 -26.73 -0.27 -2.04 16 29 N -0.52 -6.67 9.34 -6.67 -0.06 -6.74 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.17 1.30 6.59 -52.49 -0.35 0.96 16 34 H 0.39 3.98 6.76 -40.82 -0.28 3.70 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.72 7.34 -51.93 -0.38 0.34 16 37 H 0.08 1.50 7.48 -51.93 -0.39 1.11 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.75 7.31 -51.93 -0.38 0.37 16 41 H 0.07 1.87 6.52 -51.92 -0.34 1.53 16 42 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 45 H 0.05 1.12 7.98 -51.92 -0.41 0.70 16 46 H 0.15 2.48 6.06 -51.93 -0.31 2.16 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -31.78 395.04 -11.16 -42.94 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.81 Total: 5.25 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -4.11 Total: 1.71 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.23 Total: -63.19 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.78 -11.16 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034507407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.018 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds