Wall clock time and date at job start Wed Apr 1 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31886 * 118.94999 * 2 1 4 4 C 1.32137 * 120.96554 * 179.72612 * 3 2 1 5 5 C 1.39971 * 118.92233 * 0.53131 * 4 3 2 6 6 C 1.47824 * 120.94126 * 179.73767 * 5 4 3 7 7 O 1.21553 * 120.00317 * 176.78421 * 6 5 4 8 8 N 1.34781 * 119.99799 * 356.78735 * 6 5 4 9 9 C 1.46503 * 119.99860 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.24468 * 324.65614 * 9 8 6 11 11 C 1.54841 * 109.35645 * 205.00116 * 9 8 6 12 12 C 1.50126 * 110.81461 * 200.92630 * 11 9 8 13 13 C 1.52529 * 105.41434 * 97.68126 * 12 11 9 14 14 C 1.46238 * 114.28014 * 270.59087 * 13 12 11 15 15 N 1.50172 * 107.52684 * 58.41028 * 14 13 12 16 16 C 1.36930 * 120.53714 * 109.56916 * 15 14 13 17 17 H 1.08003 * 120.00427 * 173.00295 * 16 15 14 18 18 C 1.38808 * 120.00291 * 353.00777 * 16 15 14 19 19 N 1.31629 * 119.99693 * 320.43484 * 18 16 15 20 20 Si 1.86800 * 120.00454 * 140.43525 * 18 16 15 21 21 H 1.48499 * 109.46839 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47143 * 60.00121 * 20 18 16 23 23 H 1.48496 * 109.47058 * 299.99818 * 20 18 16 24 24 C 1.43435 * 118.92384 * 289.83910 * 15 14 13 25 25 C 1.39934 * 118.11620 * 359.46747 * 5 4 3 26 26 C 1.50707 * 120.53286 * 180.25187 * 25 5 4 27 27 C 1.52994 * 117.49771 * 172.64176 * 26 25 5 28 28 C 1.52996 * 60.00115 * 252.51076 * 27 26 25 29 29 N 1.31853 * 118.95422 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46545 * 270.01531 * 1 2 3 31 31 H 1.08995 * 109.47129 * 30.01221 * 1 2 3 32 32 H 1.08998 * 109.46863 * 150.01848 * 1 2 3 33 33 H 1.07993 * 120.54115 * 180.27179 * 4 3 2 34 34 H 0.97003 * 120.00063 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.21191 * 80.57879 * 11 9 8 36 36 H 1.09001 * 109.20768 * 321.26854 * 11 9 8 37 37 H 1.08997 * 110.24866 * 338.71077 * 12 11 9 38 38 H 1.09001 * 110.37035 * 216.71682 * 12 11 9 39 39 H 1.09001 * 108.52272 * 149.35050 * 13 12 11 40 40 H 1.09001 * 108.40150 * 31.75167 * 13 12 11 41 41 H 1.08992 * 109.84387 * 298.90776 * 14 13 12 42 42 H 1.08995 * 109.90493 * 177.94511 * 14 13 12 43 43 H 0.97001 * 119.99724 * 353.85648 * 19 18 16 44 44 H 1.09005 * 108.15598 * 213.03359 * 24 15 14 45 45 H 1.08999 * 108.16193 * 329.60125 * 24 15 14 46 46 H 1.08999 * 115.54837 * 318.35080 * 26 25 5 47 47 H 1.08995 * 117.50213 * 359.97438 * 27 26 25 48 48 H 1.09007 * 117.49832 * 145.02035 * 27 26 25 49 49 H 1.09003 * 117.50055 * 252.50926 * 28 27 26 50 50 H 1.09000 * 117.49796 * 107.49289 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1541 0.0000 4 6 3.4660 1.2005 0.0054 5 6 4.1856 0.0000 -0.0002 6 6 5.6639 0.0000 -0.0003 7 8 6.2717 -1.0513 0.0539 8 7 6.3378 1.1657 -0.0604 9 6 7.8028 1.1656 -0.0610 10 1 8.1623 0.3578 0.5763 11 6 8.3163 2.5195 0.4875 12 6 9.7296 2.7715 0.0482 13 6 9.6190 3.6821 -1.1704 14 6 9.5057 2.9717 -2.4436 15 7 8.2892 2.0947 -2.3654 16 6 7.1726 2.3866 -3.1023 17 1 6.3457 1.6924 -3.1280 18 6 7.1033 3.5749 -3.8164 19 7 7.5784 4.6856 -3.2936 20 14 6.3359 3.5980 -5.5194 21 1 6.3847 4.9780 -6.0655 22 1 4.9231 3.1493 -5.4318 23 1 7.0907 2.6849 -6.4148 24 6 8.3137 0.9496 -1.5020 25 6 3.4661 -1.2002 0.0002 26 6 4.1857 -2.5243 0.0001 27 6 3.3406 -3.7877 0.1743 28 6 4.2347 -3.3019 1.3168 29 7 2.1454 -1.1537 0.0005 30 1 -0.3632 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5140 32 1 -0.3633 -0.8901 -0.5135 33 1 3.9817 2.1494 0.0098 34 1 5.8528 2.0046 -0.1032 35 1 8.2767 2.5034 1.5767 36 1 7.6774 3.3216 0.1180 37 1 10.2129 1.8334 -0.2244 38 1 10.2903 3.2678 0.8404 39 1 10.5021 4.3200 -1.2073 40 1 8.7406 4.3157 -1.0480 41 1 10.3930 2.3599 -2.6062 42 1 9.3948 3.6865 -3.2589 43 1 7.8952 4.6932 -2.3768 44 1 7.7076 0.1670 -1.9584 45 1 9.3404 0.5878 -1.4466 46 1 5.0556 -2.5865 -0.6538 47 1 2.2641 -3.6612 0.2894 48 1 3.6543 -4.6814 -0.3652 49 1 5.1366 -3.8760 1.5291 50 1 3.7463 -2.8558 2.1832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034507409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:58 Heat of formation + Delta-G solvation = 72.112048 kcal Electronic energy + Delta-G solvation = -31503.549005 eV Core-core repulsion = 27532.859379 eV Total energy + Delta-G solvation = -3970.689626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.41956 -39.43319 -38.01388 -37.23496 -34.58032 -33.75516 -33.27218 -33.03710 -31.20564 -30.19390 -28.79032 -26.19216 -25.39839 -24.42073 -23.67590 -22.81580 -22.30469 -21.06743 -20.83108 -20.09629 -19.38315 -17.80424 -17.48261 -17.13301 -16.46306 -15.64966 -15.57836 -15.20932 -15.07293 -14.73693 -14.44771 -14.10111 -13.93134 -13.67527 -13.53777 -13.36967 -12.79858 -12.68602 -12.64645 -12.46853 -12.20403 -12.03625 -11.87056 -11.64957 -11.53356 -11.33427 -11.10709 -10.92154 -10.63503 -10.56226 -10.43138 -10.23881 -10.20281 -10.05981 -9.85722 -9.79339 -9.50854 -9.40815 -9.34261 -9.33650 -8.78160 -8.20571 -7.00602 -6.20724 -3.07494 0.42006 0.94189 2.99387 3.38667 3.48235 3.55596 3.59272 3.71105 3.73014 3.89029 3.96704 4.28383 4.56861 4.73790 4.82087 4.97689 5.00040 5.08520 5.10910 5.14942 5.17231 5.26412 5.33242 5.34847 5.35615 5.62873 5.63858 5.68357 5.75464 5.85687 5.88245 5.92640 5.95452 6.10844 6.18933 6.20403 6.27142 6.29205 6.32647 6.53860 6.62694 6.63532 6.80209 6.84863 6.86281 6.97918 7.19483 7.21778 7.79606 7.94529 7.96384 8.46501 8.48883 9.03292 9.80540 10.24929 11.09592 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003877 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.008277 B = 7220.899631 C = 8506.221741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.332 3.668 3 N -0.525 5.525 4 C 0.191 3.809 5 C -0.237 4.237 6 C 0.566 3.434 7 O -0.536 6.536 8 N -0.696 5.696 9 C 0.115 3.885 10 H 0.078 0.922 11 C -0.112 4.112 12 C -0.110 4.110 13 C -0.135 4.135 14 C 0.128 3.872 15 N -0.587 5.587 16 C -0.351 4.351 17 H 0.062 0.938 18 C -0.015 4.015 19 N -0.903 5.903 20 Si 1.035 2.965 21 H -0.287 1.287 22 H -0.296 1.296 23 H -0.295 1.295 24 C 0.154 3.846 25 C 0.264 3.736 26 C -0.108 4.108 27 C -0.166 4.166 28 C -0.148 4.148 29 N -0.523 5.523 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.173 0.827 34 H 0.397 0.603 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.024 0.976 42 H 0.096 0.904 43 H 0.274 0.726 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.145 0.855 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.102 0.898 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 -8.808 10.308 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 N -0.239 5.239 4 C 0.024 3.976 5 C -0.244 4.244 6 C 0.351 3.649 7 O -0.415 6.415 8 N -0.344 5.344 9 C 0.008 3.992 10 H 0.096 0.904 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.175 4.175 14 C 0.004 3.996 15 N -0.308 5.308 16 C -0.479 4.479 17 H 0.080 0.920 18 C -0.217 4.217 19 N -0.545 5.545 20 Si 0.865 3.135 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.223 1.223 24 C 0.023 3.977 25 C 0.117 3.883 26 C -0.127 4.127 27 C -0.203 4.203 28 C -0.186 4.186 29 N -0.237 5.237 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.232 0.768 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.162 0.838 47 H 0.123 0.877 48 H 0.115 0.885 49 H 0.120 0.880 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.384 -8.553 8.966 14.424 hybrid contribution 0.889 -0.269 1.301 1.598 sum -6.496 -8.822 10.267 15.014 Atomic orbital electron populations 1.20609 0.85440 1.04444 1.03922 1.23457 0.98349 0.83329 0.88231 1.68279 1.09740 1.30029 1.15873 1.23513 0.89564 0.97856 0.86658 1.21640 0.96711 0.95820 1.10269 1.17592 0.85499 0.84509 0.77289 1.90705 1.69240 1.30682 1.50838 1.45918 1.08094 1.07822 1.72611 1.22848 0.78052 0.97333 1.00984 0.90413 1.21675 0.97493 0.97350 0.98511 1.20938 0.95747 1.00235 0.97864 1.21100 1.01300 0.98711 0.96351 1.20635 0.87621 0.94261 0.97126 1.44360 1.11729 1.28274 1.46416 1.19868 0.97625 1.04812 1.25596 0.91988 1.25375 1.01340 0.90704 1.04301 1.70883 1.41140 1.25639 1.16831 0.83959 0.75622 0.75579 0.78324 1.21261 1.22297 1.22295 1.20615 0.97881 0.90810 0.88381 1.20936 0.88330 0.93802 0.85219 1.21104 1.01183 0.86738 1.03662 1.23017 0.98740 0.96664 1.01917 1.22831 1.02069 1.02246 0.91419 1.68067 1.09087 1.30119 1.16466 0.89456 0.89306 0.89457 0.81020 0.76804 0.93568 0.90986 0.91711 0.92578 0.94143 0.91038 0.95802 0.88581 0.91306 0.94059 0.94317 0.83777 0.87701 0.88455 0.87978 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.31 36.01 0.37 -0.42 16 2 C 0.33 4.53 7.64 -157.06 -1.20 3.33 16 3 N -0.52 -7.73 10.32 -10.39 -0.11 -7.84 16 4 C 0.19 2.82 10.81 -16.77 -0.18 2.63 16 5 C -0.24 -3.74 5.91 -104.69 -0.62 -4.36 16 6 C 0.57 9.67 7.58 -12.34 -0.09 9.58 16 7 O -0.54 -10.01 13.34 5.32 0.07 -9.93 16 8 N -0.70 -11.57 5.04 -53.10 -0.27 -11.84 16 9 C 0.12 1.98 2.91 -66.22 -0.19 1.79 16 10 H 0.08 1.32 7.57 -51.93 -0.39 0.93 16 11 C -0.11 -1.79 5.23 -27.19 -0.14 -1.93 16 12 C -0.11 -1.73 5.76 -28.40 -0.16 -1.89 16 13 C -0.14 -2.52 4.93 -30.19 -0.15 -2.67 16 14 C 0.13 2.75 5.22 -5.20 -0.03 2.72 16 15 N -0.59 -13.36 2.62 -175.41 -0.46 -13.82 16 16 C -0.35 -9.04 9.48 -15.06 -0.14 -9.18 16 17 H 0.06 1.68 8.04 -52.48 -0.42 1.26 16 18 C -0.01 -0.40 4.58 -17.43 -0.08 -0.48 16 19 N -0.90 -24.67 11.97 55.49 0.66 -24.01 16 20 Si 1.03 24.49 30.05 -169.99 -5.11 19.38 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.15 3.09 4.75 -4.93 -0.02 3.07 16 25 C 0.26 4.05 6.52 -81.82 -0.53 3.52 16 26 C -0.11 -1.53 4.52 -91.77 -0.41 -1.94 16 27 C -0.17 -1.89 10.04 -26.74 -0.27 -2.16 16 28 C -0.15 -1.75 10.23 -26.73 -0.27 -2.02 16 29 N -0.52 -7.57 9.37 -6.67 -0.06 -7.63 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.17 2.21 6.55 -52.49 -0.34 1.87 16 34 H 0.40 6.31 6.59 -40.82 -0.27 6.04 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 37 H 0.06 1.02 6.28 -51.93 -0.33 0.69 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.50 4.68 -51.93 -0.24 1.25 16 41 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 42 H 0.10 2.38 5.55 -51.93 -0.29 2.09 16 43 H 0.27 7.21 4.82 -40.82 -0.20 7.01 16 44 H 0.04 0.92 7.81 -51.93 -0.41 0.52 16 45 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 46 H 0.14 2.27 6.53 -51.93 -0.34 1.93 16 47 H 0.10 1.20 7.60 -51.93 -0.39 0.80 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -29.54 387.32 -10.91 -40.45 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.34 Total: 9.82 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -4.13 Total: -0.42 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.23 Total: -65.13 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.11 Total: 19.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.54 -10.91 -40.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034507409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.559 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds