Wall clock time and date at job start Wed Apr 1 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31886 * 118.94999 * 2 1 4 4 C 1.32137 * 120.96554 * 179.72612 * 3 2 1 5 5 C 1.39971 * 118.92233 * 0.53131 * 4 3 2 6 6 C 1.47824 * 120.94126 * 179.73767 * 5 4 3 7 7 O 1.21553 * 120.00317 * 176.78421 * 6 5 4 8 8 N 1.34781 * 119.99799 * 356.78735 * 6 5 4 9 9 C 1.46503 * 119.99860 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.24468 * 324.65614 * 9 8 6 11 11 C 1.54841 * 109.35645 * 205.00116 * 9 8 6 12 12 C 1.50126 * 110.81461 * 200.92630 * 11 9 8 13 13 C 1.52529 * 105.41434 * 97.68126 * 12 11 9 14 14 C 1.46238 * 114.28014 * 270.59087 * 13 12 11 15 15 N 1.50172 * 107.52684 * 58.41028 * 14 13 12 16 16 C 1.36930 * 120.53714 * 109.56916 * 15 14 13 17 17 H 1.08003 * 120.00427 * 173.00295 * 16 15 14 18 18 C 1.38808 * 120.00291 * 353.00777 * 16 15 14 19 19 N 1.31629 * 119.99693 * 320.43484 * 18 16 15 20 20 Si 1.86800 * 120.00454 * 140.43525 * 18 16 15 21 21 H 1.48499 * 109.46839 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47143 * 60.00121 * 20 18 16 23 23 H 1.48496 * 109.47058 * 299.99818 * 20 18 16 24 24 C 1.43435 * 118.92384 * 289.83910 * 15 14 13 25 25 C 1.39934 * 118.11620 * 359.46747 * 5 4 3 26 26 C 1.50707 * 120.53286 * 180.25187 * 25 5 4 27 27 C 1.52994 * 117.49771 * 172.64176 * 26 25 5 28 28 C 1.52996 * 60.00115 * 252.51076 * 27 26 25 29 29 N 1.31853 * 118.95422 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46545 * 270.01531 * 1 2 3 31 31 H 1.08995 * 109.47129 * 30.01221 * 1 2 3 32 32 H 1.08998 * 109.46863 * 150.01848 * 1 2 3 33 33 H 1.07993 * 120.54115 * 180.27179 * 4 3 2 34 34 H 0.97003 * 120.00063 * 0.02562 * 8 6 5 35 35 H 1.09001 * 109.21191 * 80.57879 * 11 9 8 36 36 H 1.09001 * 109.20768 * 321.26854 * 11 9 8 37 37 H 1.08997 * 110.24866 * 338.71077 * 12 11 9 38 38 H 1.09001 * 110.37035 * 216.71682 * 12 11 9 39 39 H 1.09001 * 108.52272 * 149.35050 * 13 12 11 40 40 H 1.09001 * 108.40150 * 31.75167 * 13 12 11 41 41 H 1.08992 * 109.84387 * 298.90776 * 14 13 12 42 42 H 1.08995 * 109.90493 * 177.94511 * 14 13 12 43 43 H 0.97001 * 119.99724 * 353.85648 * 19 18 16 44 44 H 1.09005 * 108.15598 * 213.03359 * 24 15 14 45 45 H 1.08999 * 108.16193 * 329.60125 * 24 15 14 46 46 H 1.08999 * 115.54837 * 318.35080 * 26 25 5 47 47 H 1.08995 * 117.50213 * 359.97438 * 27 26 25 48 48 H 1.09007 * 117.49832 * 145.02035 * 27 26 25 49 49 H 1.09003 * 117.50055 * 252.50926 * 28 27 26 50 50 H 1.09000 * 117.49796 * 107.49289 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1455 1.1541 0.0000 4 6 3.4660 1.2005 0.0054 5 6 4.1856 0.0000 -0.0002 6 6 5.6639 0.0000 -0.0003 7 8 6.2717 -1.0513 0.0539 8 7 6.3378 1.1657 -0.0604 9 6 7.8028 1.1656 -0.0610 10 1 8.1623 0.3578 0.5763 11 6 8.3163 2.5195 0.4875 12 6 9.7296 2.7715 0.0482 13 6 9.6190 3.6821 -1.1704 14 6 9.5057 2.9717 -2.4436 15 7 8.2892 2.0947 -2.3654 16 6 7.1726 2.3866 -3.1023 17 1 6.3457 1.6924 -3.1280 18 6 7.1033 3.5749 -3.8164 19 7 7.5784 4.6856 -3.2936 20 14 6.3359 3.5980 -5.5194 21 1 6.3847 4.9780 -6.0655 22 1 4.9231 3.1493 -5.4318 23 1 7.0907 2.6849 -6.4148 24 6 8.3137 0.9496 -1.5020 25 6 3.4661 -1.2002 0.0002 26 6 4.1857 -2.5243 0.0001 27 6 3.3406 -3.7877 0.1743 28 6 4.2347 -3.3019 1.3168 29 7 2.1454 -1.1537 0.0005 30 1 -0.3632 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5140 32 1 -0.3633 -0.8901 -0.5135 33 1 3.9817 2.1494 0.0098 34 1 5.8528 2.0046 -0.1032 35 1 8.2767 2.5034 1.5767 36 1 7.6774 3.3216 0.1180 37 1 10.2129 1.8334 -0.2244 38 1 10.2903 3.2678 0.8404 39 1 10.5021 4.3200 -1.2073 40 1 8.7406 4.3157 -1.0480 41 1 10.3930 2.3599 -2.6062 42 1 9.3948 3.6865 -3.2589 43 1 7.8952 4.6932 -2.3768 44 1 7.7076 0.1670 -1.9584 45 1 9.3404 0.5878 -1.4466 46 1 5.0556 -2.5865 -0.6538 47 1 2.2641 -3.6612 0.2894 48 1 3.6543 -4.6814 -0.3652 49 1 5.1366 -3.8760 1.5291 50 1 3.7463 -2.8558 2.1832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034507409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:56 Heat of formation + Delta-G solvation = 56.229466 kcal Electronic energy + Delta-G solvation = -31504.237726 eV Core-core repulsion = 27532.859379 eV Total energy + Delta-G solvation = -3971.378347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.55549 -40.82555 -39.49483 -38.28370 -36.12637 -35.08820 -34.62439 -34.13046 -32.96832 -31.67541 -29.83359 -27.85842 -26.59797 -25.81253 -24.97183 -24.41154 -23.26292 -22.34747 -22.12299 -21.50628 -20.89153 -19.12373 -18.86244 -18.73698 -17.51685 -17.06175 -16.81415 -16.56497 -16.32038 -16.15287 -15.84886 -15.62153 -15.46174 -15.07087 -14.98014 -14.45536 -14.32531 -13.98443 -13.77257 -13.57236 -13.46162 -13.35633 -13.04437 -12.81725 -12.75919 -12.54713 -12.48315 -12.46218 -12.33561 -12.16437 -11.96502 -11.75371 -11.59284 -11.50795 -11.28695 -11.25326 -11.17046 -10.68659 -10.54629 -10.46758 -10.34461 -9.98941 -8.85331 -8.26036 -5.07897 -0.72574 -0.20355 1.56169 1.61590 1.72597 1.80572 2.09465 2.50089 2.65577 2.66655 2.82752 2.92157 3.14479 3.22047 3.46146 3.55467 3.69226 3.80939 3.94569 3.98724 4.02119 4.05526 4.17160 4.24340 4.39708 4.44821 4.48734 4.50907 4.66362 4.69161 4.71707 4.74194 4.80581 4.82818 4.93347 4.96880 5.08152 5.10697 5.13453 5.16592 5.25318 5.29010 5.30895 5.40444 5.50719 5.58828 5.63641 5.72611 5.90563 6.45883 6.51359 6.83962 7.10884 7.12222 7.87029 8.31982 9.07041 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010734 B = 0.003877 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.008277 B = 7220.899631 C = 8506.221741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.328 3.672 3 N -0.538 5.538 4 C 0.192 3.808 5 C -0.259 4.259 6 C 0.567 3.433 7 O -0.555 6.555 8 N -0.695 5.695 9 C 0.124 3.876 10 H 0.086 0.914 11 C -0.104 4.104 12 C -0.101 4.101 13 C -0.128 4.128 14 C 0.130 3.870 15 N -0.598 5.598 16 C -0.345 4.345 17 H 0.042 0.958 18 C -0.054 4.054 19 N -0.926 5.926 20 Si 1.074 2.926 21 H -0.292 1.292 22 H -0.289 1.289 23 H -0.294 1.294 24 C 0.157 3.843 25 C 0.259 3.741 26 C -0.134 4.134 27 C -0.146 4.146 28 C -0.138 4.138 29 N -0.527 5.527 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.184 0.816 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.273 0.727 44 H 0.011 0.989 45 H 0.051 0.949 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -9.593 11.749 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 N -0.253 5.253 4 C 0.025 3.975 5 C -0.266 4.266 6 C 0.353 3.647 7 O -0.435 6.435 8 N -0.344 5.344 9 C 0.017 3.983 10 H 0.104 0.896 11 C -0.142 4.142 12 C -0.139 4.139 13 C -0.167 4.167 14 C 0.006 3.994 15 N -0.320 5.320 16 C -0.474 4.474 17 H 0.060 0.940 18 C -0.253 4.253 19 N -0.570 5.570 20 Si 0.903 3.097 21 H -0.218 1.218 22 H -0.216 1.216 23 H -0.221 1.221 24 C 0.027 3.973 25 C 0.112 3.888 26 C -0.153 4.153 27 C -0.183 4.183 28 C -0.176 4.176 29 N -0.242 5.242 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.200 0.800 34 H 0.235 0.765 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.125 0.875 48 H 0.133 0.867 49 H 0.130 0.870 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.915 -9.352 10.424 16.086 hybrid contribution 1.031 -0.106 0.846 1.338 sum -6.884 -9.458 11.270 16.243 Atomic orbital electron populations 1.20795 0.82315 1.05498 1.05534 1.24363 1.00191 0.82809 0.86392 1.68385 1.09523 1.30647 1.16698 1.23721 0.89906 0.98022 0.85863 1.21582 0.95948 0.96656 1.12443 1.17798 0.86134 0.84200 0.76574 1.90686 1.69828 1.31258 1.51722 1.45899 1.07976 1.07951 1.72595 1.22637 0.78372 0.98611 0.98708 0.89616 1.21603 0.97190 0.95363 1.00033 1.20925 0.95886 0.99942 0.97163 1.20939 1.00768 0.98811 0.96184 1.20578 0.87355 0.93742 0.97686 1.44385 1.11252 1.29022 1.47362 1.19794 0.97876 1.03699 1.26004 0.94045 1.26098 1.02329 0.90718 1.06137 1.70905 1.42853 1.26057 1.17186 0.83385 0.75425 0.75095 0.75821 1.21789 1.21628 1.22114 1.20613 0.98153 0.88943 0.89547 1.21199 0.88896 0.94146 0.84557 1.21030 1.01589 0.87520 1.05200 1.23085 0.98534 0.95631 1.01004 1.22893 1.02607 1.01324 0.90758 1.68181 1.08512 1.30429 1.17035 0.87328 0.88447 0.88142 0.79963 0.76480 0.90789 0.93119 0.91296 0.89517 0.92643 0.93508 0.94470 0.91975 0.91387 0.97086 0.93088 0.85934 0.87477 0.86694 0.87029 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.31 71.24 0.73 -0.62 16 2 C 0.33 8.54 7.64 138.71 1.06 9.60 16 3 N -0.54 -15.50 10.32 -186.78 -1.93 -17.42 16 4 C 0.19 5.67 10.81 85.07 0.92 6.59 16 5 C -0.26 -8.29 5.91 -19.91 -0.12 -8.40 16 6 C 0.57 19.69 7.58 86.78 0.66 20.35 16 7 O -0.55 -21.07 13.34 -3.88 -0.05 -21.12 16 8 N -0.70 -23.28 5.04 -440.19 -2.22 -25.49 16 9 C 0.12 4.17 2.91 46.10 0.13 4.30 16 10 H 0.09 2.79 7.57 -2.39 -0.02 2.77 16 11 C -0.10 -3.12 5.23 30.30 0.16 -2.96 16 12 C -0.10 -2.93 5.76 29.51 0.17 -2.76 16 13 C -0.13 -4.64 4.93 28.36 0.14 -4.50 16 14 C 0.13 5.60 5.22 83.58 0.44 6.04 16 15 N -0.60 -27.54 2.62 -708.86 -1.86 -29.40 16 16 C -0.34 -18.15 9.48 84.03 0.80 -17.35 16 17 H 0.04 2.32 8.04 -2.91 -0.02 2.30 16 18 C -0.05 -2.89 4.58 84.86 0.39 -2.50 16 19 N -0.93 -51.56 11.97 21.65 0.26 -51.30 16 20 Si 1.07 50.49 30.05 68.60 2.06 52.55 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 C 0.16 6.32 4.75 87.42 0.41 6.74 16 25 C 0.26 7.94 6.52 42.92 0.28 8.22 16 26 C -0.13 -3.78 4.52 -11.54 -0.05 -3.83 16 27 C -0.15 -3.09 10.04 30.59 0.31 -2.78 16 28 C -0.14 -3.11 10.23 30.59 0.31 -2.80 16 29 N -0.53 -14.78 9.37 -175.01 -1.64 -16.42 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.18 4.77 6.55 -2.91 -0.02 4.75 16 34 H 0.40 12.88 6.59 -92.71 -0.61 12.27 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.78 6.58 -2.39 -0.02 1.76 16 37 H 0.07 1.97 6.28 -2.39 -0.02 1.95 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.05 1.96 4.68 -2.39 -0.01 1.94 16 41 H 0.04 1.48 8.13 -2.39 -0.02 1.46 16 42 H 0.06 3.13 5.55 -2.39 -0.01 3.11 16 43 H 0.27 14.71 4.82 -92.71 -0.45 14.26 16 44 H 0.01 0.50 7.81 -2.38 -0.02 0.48 16 45 H 0.05 1.91 6.89 -2.39 -0.02 1.89 16 46 H 0.12 3.99 6.53 -2.39 -0.02 3.97 16 47 H 0.11 2.25 7.60 -2.39 -0.02 2.23 16 48 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 49 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.70 387.32 2.05 -62.65 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.68 Total: 32.64 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.74 Total: 13.32 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -7.38 Total: -140.04 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.05 Total: -21.12 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.06 Total: 52.55 kcal Total: -64.70 2.05 -62.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034507409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.879 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds