Wall clock time and date at job start Wed Apr 1 2020 03:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46728 * 2 1 4 4 C 1.50702 * 109.47010 * 120.00061 * 2 1 3 5 5 N 1.32155 * 120.53785 * 305.22944 * 4 2 1 6 6 C 1.31858 * 120.96857 * 180.31654 * 5 4 2 7 7 N 1.31887 * 122.08922 * 359.65096 * 6 5 4 8 8 C 1.32126 * 120.97120 * 0.03131 * 7 6 5 9 9 C 1.39932 * 120.53515 * 124.92463 * 4 2 1 10 10 C 1.47830 * 120.93849 * 359.97438 * 9 4 2 11 11 O 1.21554 * 120.00104 * 305.25669 * 10 9 4 12 12 N 1.34776 * 120.00114 * 125.26304 * 10 9 4 13 13 C 1.46886 * 120.46534 * 174.41323 * 12 10 9 14 14 C 1.53365 * 108.74503 * 124.38293 * 13 12 10 15 15 C 1.52554 * 109.12183 * 52.26219 * 14 13 12 16 16 C 1.52959 * 114.06466 * 75.54267 * 15 14 13 17 17 N 1.47155 * 87.85405 * 139.44090 * 16 15 14 18 18 C 1.36937 * 136.00427 * 153.08298 * 17 16 15 19 19 H 1.08002 * 119.99302 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00392 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00273 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46723 * 60.00234 * 22 20 18 24 24 H 1.48492 * 109.47375 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47216 * 300.00620 * 22 20 18 26 26 C 1.47164 * 87.99970 * 333.33352 * 17 16 15 27 27 C 1.52551 * 113.43279 * 302.66921 * 15 14 13 28 28 C 1.46891 * 120.46178 * 354.42957 * 12 10 9 29 29 H 1.08993 * 109.46961 * 299.99761 * 1 2 3 30 30 H 1.08997 * 109.46847 * 60.00207 * 1 2 3 31 31 H 1.09008 * 109.47090 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47024 * 240.00285 * 2 1 3 33 33 H 1.09000 * 109.46593 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47287 * 299.99523 * 3 2 1 35 35 H 1.08993 * 109.47205 * 60.00388 * 3 2 1 36 36 H 1.08000 * 118.95693 * 179.68231 * 6 5 4 37 37 H 1.07998 * 120.53962 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.59302 * 4.60814 * 13 12 10 39 39 H 1.08997 * 109.59749 * 244.16110 * 13 12 10 40 40 H 1.09001 * 109.52693 * 292.37078 * 14 13 12 41 41 H 1.08998 * 109.58578 * 172.18813 * 14 13 12 42 42 H 1.09004 * 113.48775 * 24.68845 * 16 15 14 43 43 H 1.09004 * 113.48771 * 254.18479 * 16 15 14 44 44 H 0.97003 * 120.00275 * 179.97438 * 21 20 18 45 45 H 1.09007 * 113.49026 * 141.41354 * 26 17 16 46 46 H 1.09001 * 113.49222 * 271.92513 * 26 17 16 47 47 H 1.08996 * 109.53345 * 177.22269 * 27 15 14 48 48 H 1.09002 * 109.52846 * 297.42809 * 27 15 14 49 49 H 1.09000 * 109.58998 * 355.38761 * 28 12 10 50 50 H 1.08994 * 109.58955 * 115.82530 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.6371 -0.3312 2.4332 6 6 2.0760 -0.9428 3.5158 7 7 2.9169 -1.9570 3.4553 8 6 3.3588 -2.4055 2.2937 9 6 2.9199 -1.7864 1.1177 10 6 3.3852 -2.2523 -0.2059 11 8 2.5773 -2.5575 -1.0613 12 7 4.7052 -2.3387 -0.4641 13 6 5.1804 -2.9145 -1.7291 14 6 6.0880 -1.8930 -2.4254 15 6 7.1642 -1.4321 -1.4473 16 6 8.2787 -2.4545 -1.2190 17 7 9.2342 -1.3356 -1.2415 18 6 10.4684 -1.0831 -0.7047 19 1 10.9535 -1.8288 -0.0922 20 6 11.0958 0.1309 -0.9475 21 7 10.5043 1.0398 -1.6934 22 14 12.7791 0.4756 -0.2146 23 1 13.7497 -0.5347 -0.7072 24 1 13.2272 1.8320 -0.6198 25 1 12.6983 0.4034 1.2665 26 6 8.2787 -0.6043 -2.0889 27 6 6.6001 -0.8297 -0.1643 28 6 5.6886 -1.8586 0.5157 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.7358 -0.6027 4.4827 37 1 4.0470 -3.2368 2.2523 38 1 4.3285 -3.1429 -2.3696 39 1 5.7434 -3.8257 -1.5273 40 1 5.4945 -1.0362 -2.7445 41 1 6.5583 -2.3542 -3.2938 42 1 8.4057 -3.1511 -2.0478 43 1 8.2181 -2.9547 -0.2524 44 1 10.9426 1.8884 -1.8629 45 1 8.2182 0.4592 -1.8575 46 1 8.4057 -0.7983 -3.1540 47 1 7.4187 -0.5686 0.5064 48 1 6.0248 0.0646 -0.4039 49 1 5.1715 -1.3914 1.3538 50 1 6.2867 -2.6965 0.8737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035853670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:13 Heat of formation + Delta-G solvation = 67.802808 kcal Electronic energy + Delta-G solvation = -31402.152555 eV Core-core repulsion = 27431.276065 eV Total energy + Delta-G solvation = -3970.876489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.72599 -40.18030 -38.80472 -36.47547 -35.76532 -33.49796 -32.65758 -32.07314 -30.86004 -30.40104 -27.32425 -27.09955 -25.61022 -25.18379 -24.85278 -23.48356 -23.24732 -21.46181 -21.07259 -20.01112 -18.25125 -18.10134 -17.00959 -16.80293 -16.71622 -16.22485 -15.33986 -15.02521 -14.90402 -14.74034 -14.63338 -14.29041 -14.08834 -13.85261 -13.80183 -13.71425 -13.33257 -13.11068 -12.75224 -12.35386 -12.31680 -12.22621 -11.95596 -11.76372 -11.72183 -11.52012 -11.14200 -11.12830 -11.04555 -10.92315 -10.87230 -10.80602 -10.47408 -10.33883 -10.03221 -9.76838 -9.69060 -9.66108 -9.53605 -9.26576 -8.83528 -8.56406 -6.90540 -5.79942 -3.12132 0.31255 0.72517 2.40919 2.84009 3.36483 3.40949 3.42172 3.42188 3.67495 3.81095 4.00125 4.20401 4.42497 4.59204 4.82824 4.87257 4.90568 4.93267 4.96081 5.08032 5.15706 5.24086 5.34310 5.40077 5.42542 5.49535 5.53183 5.56983 5.66992 5.69275 5.73437 5.78059 5.80837 5.89581 5.96396 6.05016 6.07600 6.14635 6.20314 6.28810 6.40338 6.51094 6.55272 6.59806 6.73504 6.75402 7.18152 7.25811 7.30921 7.52673 7.72413 7.93554 7.94497 9.00556 9.67409 10.61767 11.37280 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.002951 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.499050 B = 9487.546779 C = 9842.886037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.141 4.141 4 C 0.232 3.768 5 N -0.514 5.514 6 C 0.309 3.691 7 N -0.523 5.523 8 C 0.184 3.816 9 C -0.230 4.230 10 C 0.570 3.430 11 O -0.532 6.532 12 N -0.594 5.594 13 C 0.115 3.885 14 C -0.114 4.114 15 C -0.116 4.116 16 C 0.128 3.872 17 N -0.608 5.608 18 C -0.218 4.218 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.167 3.833 27 C -0.092 4.092 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.200 0.800 37 H 0.173 0.827 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.254 0.746 45 H 0.070 0.930 46 H 0.024 0.976 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.073 0.927 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.704 -4.354 5.311 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 C -0.199 4.199 4 C 0.085 3.915 5 N -0.228 5.228 6 C 0.022 3.978 7 N -0.236 5.236 8 C 0.017 3.983 9 C -0.237 4.237 10 C 0.356 3.644 11 O -0.410 6.410 12 N -0.326 5.326 13 C -0.007 4.007 14 C -0.153 4.153 15 C -0.117 4.117 16 C 0.001 3.999 17 N -0.333 5.333 18 C -0.346 4.346 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.041 3.959 27 C -0.130 4.130 28 C -0.017 4.017 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.217 0.783 37 H 0.190 0.810 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.102 -3.998 5.835 20.370 hybrid contribution 1.547 -0.150 -0.385 1.601 sum -17.556 -4.149 5.451 18.845 Atomic orbital electron populations 1.21705 0.92761 1.02158 1.02570 1.20425 0.97575 0.96627 0.93277 1.21796 1.01245 0.93976 1.02860 1.21803 0.87062 0.88701 0.93957 1.68268 1.25519 1.30424 0.98545 1.25185 0.88121 0.86855 0.97636 1.68459 1.12819 1.14044 1.28321 1.23454 0.92773 0.95872 0.86189 1.21625 1.03728 1.01856 0.96510 1.17815 0.82509 0.77915 0.86130 1.90776 1.53522 1.50025 1.46702 1.48081 1.04807 1.60084 1.19592 1.21715 0.98609 0.96116 0.84237 1.21734 0.96719 0.98667 0.98137 1.22087 0.93612 1.00310 0.95720 1.22394 0.88010 0.91649 0.97829 1.45553 1.17711 1.13169 1.56883 1.18863 0.91804 0.99586 1.24324 0.90310 1.24766 0.98727 0.96640 1.00180 1.69811 1.38171 1.06985 1.41641 0.86230 0.83814 0.77202 0.78686 1.21215 1.21564 1.21080 1.22029 0.83476 0.97684 0.92679 1.21394 0.98419 0.96460 0.96774 1.21980 0.90488 0.98532 0.90745 0.91585 0.91760 0.92704 0.87890 0.92540 0.91445 0.91611 0.78308 0.80996 0.89126 0.91023 0.91697 0.90516 0.95145 0.94584 0.93622 0.91215 0.95800 0.89155 0.92114 0.90824 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.06 37.16 0.34 -0.96 16 2 C -0.06 -0.66 3.00 -91.77 -0.28 -0.94 16 3 C -0.14 -1.42 9.15 37.16 0.34 -1.08 16 4 C 0.23 2.75 5.52 -81.82 -0.45 2.29 16 5 N -0.51 -5.73 9.99 -10.48 -0.10 -5.84 16 6 C 0.31 3.04 12.27 -92.02 -1.13 1.91 16 7 N -0.52 -5.66 10.42 -14.24 -0.15 -5.81 16 8 C 0.18 1.96 9.08 -16.78 -0.15 1.81 16 9 C -0.23 -2.75 4.61 -104.69 -0.48 -3.23 16 10 C 0.57 7.51 6.39 -12.34 -0.08 7.43 16 11 O -0.53 -8.26 14.88 5.32 0.08 -8.18 16 12 N -0.59 -7.37 2.94 -173.74 -0.51 -7.88 16 13 C 0.11 1.41 6.35 -3.64 -0.02 1.38 16 14 C -0.11 -1.56 5.30 -26.77 -0.14 -1.70 16 15 C -0.12 -1.94 0.84 -155.02 -0.13 -2.07 16 16 C 0.13 2.40 7.63 -8.22 -0.06 2.34 16 17 N -0.61 -14.77 3.55 -184.70 -0.66 -15.43 16 18 C -0.22 -5.92 10.74 -15.06 -0.16 -6.08 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.18 5.50 -17.44 -0.10 -0.27 16 21 N -0.92 -26.64 11.51 55.49 0.64 -26.00 16 22 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.17 3.71 6.54 -8.22 -0.05 3.66 16 27 C -0.09 -1.43 5.27 -26.78 -0.14 -1.58 16 28 C 0.10 1.29 5.60 -3.65 -0.02 1.27 16 29 H 0.07 0.62 7.98 -51.93 -0.41 0.21 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.10 1.30 5.55 -51.93 -0.29 1.02 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.17 1.48 7.84 -52.49 -0.41 1.07 16 38 H 0.09 1.12 6.97 -51.93 -0.36 0.76 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 43 H 0.04 0.64 7.53 -51.93 -0.39 0.25 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.07 1.75 7.12 -51.92 -0.37 1.38 16 46 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 47 H 0.09 1.65 7.95 -51.93 -0.41 1.23 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.85 5.28 -51.93 -0.27 0.57 16 50 H 0.08 0.88 7.60 -51.93 -0.39 0.49 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -31.67 394.43 -10.43 -42.11 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.93 Total: 0.24 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.72 Total: 4.17 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.78 Total: -60.95 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.67 -10.43 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035853670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.909 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds