Wall clock time and date at job start Wed Apr 1 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46728 * 2 1 4 4 C 1.50702 * 109.47010 * 120.00061 * 2 1 3 5 5 N 1.32155 * 120.53785 * 305.22944 * 4 2 1 6 6 C 1.31858 * 120.96857 * 180.31654 * 5 4 2 7 7 N 1.31887 * 122.08922 * 359.65096 * 6 5 4 8 8 C 1.32126 * 120.97120 * 0.03131 * 7 6 5 9 9 C 1.39932 * 120.53515 * 124.92463 * 4 2 1 10 10 C 1.47830 * 120.93849 * 359.97438 * 9 4 2 11 11 O 1.21554 * 120.00104 * 305.25669 * 10 9 4 12 12 N 1.34776 * 120.00114 * 125.26304 * 10 9 4 13 13 C 1.46886 * 120.46534 * 174.41323 * 12 10 9 14 14 C 1.53365 * 108.74503 * 124.38293 * 13 12 10 15 15 C 1.52554 * 109.12183 * 52.26219 * 14 13 12 16 16 C 1.52959 * 114.06466 * 75.54267 * 15 14 13 17 17 N 1.47155 * 87.85405 * 139.44090 * 16 15 14 18 18 C 1.36937 * 136.00427 * 153.08298 * 17 16 15 19 19 H 1.08002 * 119.99302 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00392 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00273 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46723 * 60.00234 * 22 20 18 24 24 H 1.48492 * 109.47375 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47216 * 300.00620 * 22 20 18 26 26 C 1.47164 * 87.99970 * 333.33352 * 17 16 15 27 27 C 1.52551 * 113.43279 * 302.66921 * 15 14 13 28 28 C 1.46891 * 120.46178 * 354.42957 * 12 10 9 29 29 H 1.08993 * 109.46961 * 299.99761 * 1 2 3 30 30 H 1.08997 * 109.46847 * 60.00207 * 1 2 3 31 31 H 1.09008 * 109.47090 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47024 * 240.00285 * 2 1 3 33 33 H 1.09000 * 109.46593 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47287 * 299.99523 * 3 2 1 35 35 H 1.08993 * 109.47205 * 60.00388 * 3 2 1 36 36 H 1.08000 * 118.95693 * 179.68231 * 6 5 4 37 37 H 1.07998 * 120.53962 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.59302 * 4.60814 * 13 12 10 39 39 H 1.08997 * 109.59749 * 244.16110 * 13 12 10 40 40 H 1.09001 * 109.52693 * 292.37078 * 14 13 12 41 41 H 1.08998 * 109.58578 * 172.18813 * 14 13 12 42 42 H 1.09004 * 113.48775 * 24.68845 * 16 15 14 43 43 H 1.09004 * 113.48771 * 254.18479 * 16 15 14 44 44 H 0.97003 * 120.00275 * 179.97438 * 21 20 18 45 45 H 1.09007 * 113.49026 * 141.41354 * 26 17 16 46 46 H 1.09001 * 113.49222 * 271.92513 * 26 17 16 47 47 H 1.08996 * 109.53345 * 177.22269 * 27 15 14 48 48 H 1.09002 * 109.52846 * 297.42809 * 27 15 14 49 49 H 1.09000 * 109.58998 * 355.38761 * 28 12 10 50 50 H 1.08994 * 109.58955 * 115.82530 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.6371 -0.3312 2.4332 6 6 2.0760 -0.9428 3.5158 7 7 2.9169 -1.9570 3.4553 8 6 3.3588 -2.4055 2.2937 9 6 2.9199 -1.7864 1.1177 10 6 3.3852 -2.2523 -0.2059 11 8 2.5773 -2.5575 -1.0613 12 7 4.7052 -2.3387 -0.4641 13 6 5.1804 -2.9145 -1.7291 14 6 6.0880 -1.8930 -2.4254 15 6 7.1642 -1.4321 -1.4473 16 6 8.2787 -2.4545 -1.2190 17 7 9.2342 -1.3356 -1.2415 18 6 10.4684 -1.0831 -0.7047 19 1 10.9535 -1.8288 -0.0922 20 6 11.0958 0.1309 -0.9475 21 7 10.5043 1.0398 -1.6934 22 14 12.7791 0.4756 -0.2146 23 1 13.7497 -0.5347 -0.7072 24 1 13.2272 1.8320 -0.6198 25 1 12.6983 0.4034 1.2665 26 6 8.2787 -0.6043 -2.0889 27 6 6.6001 -0.8297 -0.1643 28 6 5.6886 -1.8586 0.5157 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.7358 -0.6027 4.4827 37 1 4.0470 -3.2368 2.2523 38 1 4.3285 -3.1429 -2.3696 39 1 5.7434 -3.8257 -1.5273 40 1 5.4945 -1.0362 -2.7445 41 1 6.5583 -2.3542 -3.2938 42 1 8.4057 -3.1511 -2.0478 43 1 8.2181 -2.9547 -0.2524 44 1 10.9426 1.8884 -1.8629 45 1 8.2182 0.4592 -1.8575 46 1 8.4057 -0.7983 -3.1540 47 1 7.4187 -0.5686 0.5064 48 1 6.0248 0.0646 -0.4039 49 1 5.1715 -1.3914 1.3538 50 1 6.2867 -2.6965 0.8737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035853670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:12 Heat of formation + Delta-G solvation = 50.159863 kcal Electronic energy + Delta-G solvation = -31402.917610 eV Core-core repulsion = 27431.276065 eV Total energy + Delta-G solvation = -3971.641545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.60401 -41.39606 -40.07583 -37.46380 -36.86704 -34.60176 -34.16407 -33.15265 -31.95610 -31.83395 -28.79713 -28.10896 -26.77273 -26.35083 -26.02131 -24.84588 -24.39576 -22.99982 -21.89756 -21.17013 -19.33173 -19.04975 -18.67028 -18.00500 -17.73074 -17.28983 -16.85421 -16.30970 -16.11178 -15.85850 -15.64899 -15.57467 -15.17270 -15.12504 -15.05270 -14.57583 -14.38047 -14.21467 -14.08577 -13.74890 -13.63611 -13.14734 -13.10351 -12.95243 -12.80316 -12.76793 -12.59752 -12.54720 -12.33879 -12.23375 -12.16800 -11.96664 -11.77472 -11.64747 -11.54847 -11.15228 -11.00639 -10.90621 -10.80015 -10.58534 -10.35968 -9.68375 -8.87523 -7.88342 -5.20498 -0.51580 -0.10489 1.40826 1.45702 1.48263 1.54339 1.85283 2.48520 2.60437 2.88026 3.06792 3.19772 3.26975 3.33267 3.46910 3.58971 3.76206 3.78103 4.02408 4.04260 4.10094 4.11701 4.18473 4.29737 4.35906 4.40641 4.51564 4.59280 4.64751 4.73286 4.75031 4.83349 4.85161 4.86234 4.89696 4.91920 5.03673 5.06054 5.13823 5.17298 5.20477 5.25862 5.28888 5.32333 5.35075 5.45921 5.58018 5.73643 5.77484 5.96123 6.23261 6.91754 6.93065 6.93168 7.63471 8.65312 9.28919 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.002951 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.499050 B = 9487.546779 C = 9842.886037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.135 4.135 4 C 0.223 3.777 5 N -0.523 5.523 6 C 0.310 3.690 7 N -0.532 5.532 8 C 0.189 3.811 9 C -0.247 4.247 10 C 0.576 3.424 11 O -0.558 6.558 12 N -0.592 5.592 13 C 0.120 3.880 14 C -0.106 4.106 15 C -0.086 4.086 16 C 0.131 3.869 17 N -0.637 5.637 18 C -0.224 4.224 19 H 0.085 0.915 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.974 3.026 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.275 1.275 26 C 0.161 3.839 27 C -0.088 4.088 28 C 0.119 3.881 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.246 0.754 45 H 0.031 0.969 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.667 -5.843 6.755 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C -0.193 4.193 4 C 0.076 3.924 5 N -0.237 5.237 6 C 0.024 3.976 7 N -0.246 5.246 8 C 0.022 3.978 9 C -0.254 4.254 10 C 0.363 3.637 11 O -0.437 6.437 12 N -0.323 5.323 13 C -0.002 4.002 14 C -0.145 4.145 15 C -0.087 4.087 16 C 0.006 3.994 17 N -0.363 5.363 18 C -0.352 4.352 19 H 0.103 0.897 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.803 3.197 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.201 1.201 26 C 0.035 3.965 27 C -0.126 4.126 28 C -0.004 4.004 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.249 0.751 37 H 0.210 0.790 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.103 0.897 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.080 -5.525 7.294 22.067 hybrid contribution 1.806 0.308 -0.827 2.010 sum -18.274 -5.217 6.467 20.074 Atomic orbital electron populations 1.21660 0.91734 1.01791 1.03384 1.20414 0.98416 0.96754 0.92466 1.21752 1.00314 0.93643 1.03595 1.21965 0.87053 0.88855 0.94510 1.68332 1.25923 1.30840 0.98572 1.25898 0.87116 0.86061 0.98517 1.68558 1.13303 1.14505 1.28210 1.23789 0.92495 0.95884 0.85667 1.21576 1.04810 1.02728 0.96327 1.17925 0.82290 0.77191 0.86279 1.90763 1.54114 1.51146 1.47693 1.48074 1.04691 1.59860 1.19656 1.21718 0.98433 0.95972 0.84051 1.21670 0.95902 0.99210 0.97718 1.21833 0.93106 0.97630 0.96169 1.22553 0.86695 0.91051 0.99102 1.45888 1.17606 1.15786 1.57026 1.19275 0.92797 0.99510 1.23652 0.89736 1.25567 1.02298 0.96793 1.01334 1.70014 1.39489 1.07125 1.43588 0.85214 0.79781 0.76458 0.78272 1.20525 1.22392 1.20069 1.22018 0.86031 0.96278 0.92189 1.21292 0.98060 0.97444 0.95850 1.21863 0.89988 0.98077 0.90450 0.91242 0.90451 0.93603 0.89629 0.93860 0.90245 0.91321 0.75094 0.78977 0.88836 0.89077 0.92027 0.89617 0.93793 0.92809 0.94517 0.95035 0.97055 0.91979 0.92687 0.89704 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.06 71.98 0.65 -1.69 16 2 C -0.06 -1.31 3.00 -11.54 -0.03 -1.35 16 3 C -0.14 -2.63 9.15 71.98 0.66 -1.97 16 4 C 0.22 5.02 5.52 42.92 0.24 5.26 16 5 N -0.52 -10.78 9.99 -187.06 -1.87 -12.65 16 6 C 0.31 5.37 12.27 180.84 2.22 7.59 16 7 N -0.53 -10.21 10.42 -198.98 -2.07 -12.29 16 8 C 0.19 3.57 9.08 85.07 0.77 4.35 16 9 C -0.25 -5.51 4.61 -19.91 -0.09 -5.61 16 10 C 0.58 14.27 6.39 86.78 0.55 14.82 16 11 O -0.56 -16.69 14.88 -3.88 -0.06 -16.75 16 12 N -0.59 -13.42 2.94 -821.88 -2.42 -15.84 16 13 C 0.12 2.63 6.35 86.43 0.55 3.18 16 14 C -0.11 -2.76 5.30 30.57 0.16 -2.60 16 15 C -0.09 -2.83 0.84 -52.51 -0.04 -2.88 16 16 C 0.13 4.72 7.63 83.32 0.64 5.36 16 17 N -0.64 -31.21 3.55 -738.25 -2.62 -33.83 16 18 C -0.22 -12.22 10.74 84.03 0.90 -11.32 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 21 N -0.95 -57.22 11.51 21.65 0.25 -56.98 16 22 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.16 7.36 6.54 83.31 0.55 7.90 16 27 C -0.09 -2.70 5.27 30.56 0.16 -2.54 16 28 C 0.12 2.65 5.60 86.42 0.48 3.13 16 29 H 0.07 1.21 7.98 -2.39 -0.02 1.19 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.09 2.15 5.55 -2.39 -0.01 2.14 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.23 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.19 2.70 7.84 -2.91 -0.02 2.68 16 38 H 0.09 2.10 6.97 -2.38 -0.02 2.08 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 42 H 0.04 1.52 8.06 -2.38 -0.02 1.50 16 43 H 0.05 1.77 7.53 -2.38 -0.02 1.75 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.03 1.66 7.12 -2.38 -0.02 1.65 16 46 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 47 H 0.06 2.28 7.95 -2.39 -0.02 2.26 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.08 1.76 5.28 -2.39 -0.01 1.75 16 50 H 0.09 1.84 7.60 -2.39 -0.02 1.82 16 Total: -1.00 -70.12 394.43 3.00 -67.12 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.93 Total: 15.66 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 8.83 Total: 18.34 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -8.73 Total: -131.58 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.06 Total: -16.75 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.12 3.00 -67.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035853670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.277 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds