Wall clock time and date at job start Wed Apr 1 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31886 * 118.95308 * 2 1 4 4 C 1.32136 * 120.96806 * 179.68344 * 3 2 1 5 5 C 1.39964 * 118.91996 * 0.61281 * 4 3 2 6 6 C 1.47828 * 120.93936 * 179.69565 * 5 4 3 7 7 O 1.21558 * 120.00323 * 126.13687 * 6 5 4 8 8 N 1.34783 * 120.00093 * 306.13483 * 6 5 4 9 9 C 1.46922 * 120.62977 * 354.23093 * 8 6 5 10 10 C 1.53192 * 108.77295 * 233.58640 * 9 8 6 11 11 C 1.53047 * 109.31104 * 305.35907 * 10 9 8 12 12 H 1.08996 * 109.45833 * 301.36298 * 11 10 9 13 13 N 1.46494 * 109.46129 * 181.38820 * 11 10 9 14 14 C 1.36934 * 120.00073 * 85.00033 * 13 11 10 15 15 H 1.07999 * 120.00074 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99955 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47273 * 270.00149 * 18 16 14 20 20 H 1.48499 * 109.47360 * 30.00064 * 18 16 14 21 21 H 1.48496 * 109.47168 * 150.00371 * 18 16 14 22 22 C 1.53040 * 109.53533 * 61.36687 * 11 10 9 23 23 H 1.09003 * 109.49710 * 58.58707 * 22 11 10 24 24 C 1.53005 * 109.49528 * 178.68393 * 22 11 10 25 25 C 1.46926 * 120.62924 * 174.20033 * 8 6 5 26 26 C 1.39930 * 118.12234 * 359.43032 * 5 4 3 27 27 C 1.50703 * 120.53754 * 180.25125 * 26 5 4 28 28 C 1.53003 * 117.49751 * 193.54526 * 27 26 5 29 29 C 1.53002 * 59.99979 * 252.50771 * 28 27 26 30 30 N 1.31851 * 118.95304 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46343 * 269.97369 * 1 2 3 32 32 H 1.09000 * 109.47383 * 29.96732 * 1 2 3 33 33 H 1.08997 * 109.47320 * 149.97587 * 1 2 3 34 34 H 1.08000 * 120.53820 * 180.31650 * 4 3 2 35 35 H 1.08998 * 109.59096 * 113.79251 * 9 8 6 36 36 H 1.09002 * 109.58495 * 353.36256 * 9 8 6 37 37 H 1.09000 * 109.50048 * 185.41598 * 10 9 8 38 38 H 1.08992 * 109.50399 * 65.31247 * 10 9 8 39 39 H 0.97001 * 119.99874 * 265.00052 * 13 11 10 40 40 H 0.96995 * 120.00368 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.46999 * 60.00452 * 24 22 11 42 42 H 1.09010 * 109.46648 * 180.02562 * 24 22 11 43 43 H 1.08991 * 109.47106 * 300.00022 * 24 22 11 44 44 H 1.09002 * 109.58650 * 246.20025 * 25 8 6 45 45 H 1.08993 * 109.59221 * 6.62931 * 25 8 6 46 46 H 1.09003 * 115.54914 * 339.24535 * 27 26 5 47 47 H 1.09000 * 117.49884 * 359.97438 * 28 27 26 48 48 H 1.08996 * 117.50207 * 145.01656 * 28 27 26 49 49 H 1.08998 * 117.49619 * 252.51570 * 29 28 27 50 50 H 1.08992 * 117.50275 * 107.48670 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2005 0.0063 5 6 4.1855 0.0000 -0.0002 6 6 5.6638 -0.0001 -0.0003 7 8 6.2717 -0.6254 0.8465 8 7 6.3377 0.6932 -0.9394 9 6 5.6226 1.3496 -2.0423 10 6 6.2325 0.8876 -3.3695 11 6 7.7400 1.1513 -3.3527 12 1 7.9208 2.2146 -3.1956 13 7 8.3215 0.7412 -4.6332 14 6 8.3150 1.6046 -5.6960 15 1 7.8815 2.5881 -5.5901 16 6 8.8665 1.2162 -6.9092 17 7 9.3953 0.0178 -7.0382 18 14 8.8582 2.3943 -8.3588 19 1 7.6138 2.2018 -9.1461 20 1 8.9177 3.7921 -7.8611 21 1 10.0364 2.1255 -9.2218 22 6 8.3868 0.3516 -2.2195 23 1 8.1853 -0.7101 -2.3623 24 6 9.8981 0.5903 -2.2241 25 6 7.8013 0.8074 -0.8792 26 6 3.4661 -1.2002 -0.0007 27 6 4.1857 -2.5243 -0.0018 28 6 3.3636 -3.7748 -0.3202 29 6 3.8408 -3.5168 1.1104 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3632 -0.0005 1.0278 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3634 -0.8897 -0.5142 34 1 3.9817 2.1494 0.0114 35 1 5.7231 2.4310 -1.9507 36 1 4.5684 1.0743 -2.0094 37 1 5.7760 1.4392 -4.1913 38 1 6.0513 -0.1790 -3.5015 39 1 8.7112 -0.1420 -4.7282 40 1 9.7804 -0.2537 -7.8860 41 1 10.0987 1.6519 -2.0797 42 1 10.3584 0.0201 -1.4170 43 1 10.3139 0.2685 -3.1788 44 1 8.0795 1.8447 -0.6929 45 1 8.1846 0.1746 -0.0789 46 1 5.2181 -2.4980 -0.3506 47 1 2.3023 -3.6399 -0.5285 48 1 3.8550 -4.5715 -0.8787 49 1 4.6462 -4.1436 1.4931 50 1 3.0935 -3.2119 1.8429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036274922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:48 Heat of formation + Delta-G solvation = 48.018917 kcal Electronic energy + Delta-G solvation = -30884.479272 eV Core-core repulsion = 26912.744889 eV Total energy + Delta-G solvation = -3971.734383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70804 -39.90801 -37.84901 -37.38135 -34.78937 -33.86086 -33.36072 -32.65774 -31.54705 -29.56336 -29.13838 -26.58037 -25.62786 -25.17360 -23.75003 -22.74056 -22.49069 -21.75370 -21.30446 -20.26082 -19.32410 -18.14335 -17.37575 -17.08768 -16.60646 -16.24031 -15.63557 -15.33047 -15.02730 -14.80648 -14.27725 -14.23404 -13.94716 -13.83318 -13.65956 -13.38263 -13.10575 -13.00039 -12.76180 -12.49997 -12.37602 -12.23198 -11.94258 -11.78597 -11.74495 -11.66440 -11.49487 -11.23789 -10.98386 -10.85766 -10.72536 -10.67281 -10.47807 -10.41020 -10.23561 -9.91901 -9.79761 -9.67505 -9.55993 -9.42124 -8.94900 -8.60320 -7.01445 -5.81759 -3.10775 0.31673 0.72108 2.47840 2.88091 3.26619 3.39371 3.44916 3.46524 3.51154 3.70050 3.78356 4.00869 4.26551 4.53630 4.59205 4.77360 4.79613 4.81781 4.91427 4.96463 5.16216 5.18216 5.19251 5.20689 5.28007 5.45880 5.47652 5.49788 5.52620 5.56024 5.62547 5.66948 5.70893 5.87090 5.88302 5.99210 6.01418 6.05477 6.08020 6.24046 6.29991 6.37721 6.43897 6.55327 6.63877 6.74600 6.86483 6.98542 7.32254 7.64423 7.75738 8.01167 8.36288 9.47897 10.04722 10.39508 11.40627 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.002896 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.647051 B = 9666.260913 C =10251.189783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.333 3.667 3 N -0.524 5.524 4 C 0.189 3.811 5 C -0.232 4.232 6 C 0.571 3.429 7 O -0.530 6.530 8 N -0.597 5.597 9 C 0.105 3.895 10 C -0.151 4.151 11 C 0.185 3.815 12 H 0.049 0.951 13 N -0.720 5.720 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.282 1.282 21 H -0.292 1.292 22 C -0.110 4.110 23 H 0.070 0.930 24 C -0.136 4.136 25 C 0.120 3.880 26 C 0.260 3.740 27 C -0.126 4.126 28 C -0.154 4.154 29 C -0.144 4.144 30 N -0.519 5.519 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.128 0.872 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.885 -1.536 16.958 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 N -0.238 5.238 4 C 0.022 3.978 5 C -0.240 4.240 6 C 0.357 3.643 7 O -0.407 6.407 8 N -0.329 5.329 9 C -0.018 4.018 10 C -0.192 4.192 11 C 0.074 3.926 12 H 0.067 0.933 13 N -0.360 5.360 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.208 1.208 21 H -0.218 1.218 22 C -0.130 4.130 23 H 0.088 0.912 24 C -0.194 4.194 25 C -0.002 4.002 26 C 0.114 3.886 27 C -0.145 4.145 28 C -0.191 4.191 29 C -0.182 4.182 30 N -0.234 5.234 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.191 0.809 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.146 0.854 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.553 -1.699 17.251 22.633 hybrid contribution 1.057 0.539 -1.097 1.616 sum -13.496 -1.160 16.154 21.081 Atomic orbital electron populations 1.20618 0.85313 1.04510 1.04032 1.23430 0.98361 0.83182 0.88318 1.68299 1.09479 1.30025 1.16000 1.23434 0.89420 0.97518 0.87447 1.21457 0.96331 0.96216 1.09973 1.17785 0.85762 0.79142 0.81661 1.90789 1.69070 1.42524 1.38329 1.48111 1.07995 1.51430 1.25346 1.21970 0.95690 0.97157 0.87028 1.22694 1.00287 1.01744 0.94481 1.20186 0.89596 0.96549 0.86264 0.93309 1.42397 1.69695 1.17262 1.06637 1.19206 1.32149 0.95990 0.89725 0.91230 1.24728 1.01293 0.96823 0.97926 1.69654 1.44535 1.18613 1.25156 0.86229 0.77094 0.80178 0.82906 1.21776 1.20766 1.21804 1.21746 0.96278 1.00878 0.94092 0.91190 1.21657 0.94128 1.01147 1.02434 1.21790 0.77653 1.01777 0.98972 1.20798 0.88514 0.93343 0.85980 1.21019 0.99610 0.86154 1.07684 1.23023 1.00957 0.96840 0.98294 1.22908 1.03216 1.00219 0.91883 1.68019 1.08868 1.30203 1.16265 0.89380 0.89280 0.89381 0.80891 0.90997 0.91138 0.90451 0.92214 0.78196 0.93486 0.92996 0.93763 0.90689 0.91175 0.89100 0.85440 0.87359 0.88075 0.87856 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.31 36.01 0.37 -0.26 16 2 C 0.33 3.74 7.64 -157.07 -1.20 2.54 16 3 N -0.52 -6.14 10.32 -10.39 -0.11 -6.25 16 4 C 0.19 2.15 9.11 -16.77 -0.15 2.00 16 5 C -0.23 -3.02 4.62 -104.69 -0.48 -3.50 16 6 C 0.57 8.13 6.35 -12.33 -0.08 8.05 16 7 O -0.53 -8.84 15.42 5.31 0.08 -8.76 16 8 N -0.60 -8.02 2.97 -173.89 -0.52 -8.54 16 9 C 0.10 1.34 5.63 -3.71 -0.02 1.32 16 10 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 11 C 0.18 3.35 2.19 -67.89 -0.15 3.20 16 12 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 13 N -0.72 -16.85 4.41 -53.39 -0.24 -17.08 16 14 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 18 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 C -0.11 -1.73 2.46 -90.50 -0.22 -1.95 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 24 C -0.14 -2.11 9.03 37.16 0.34 -1.78 16 25 C 0.12 1.63 5.73 -3.71 -0.02 1.61 16 26 C 0.26 3.39 6.50 -81.82 -0.53 2.86 16 27 C -0.13 -1.54 5.28 -91.77 -0.48 -2.02 16 28 C -0.15 -1.54 10.04 -26.73 -0.27 -1.80 16 29 C -0.14 -1.47 10.23 -26.73 -0.27 -1.74 16 30 N -0.52 -6.36 9.43 -6.67 -0.06 -6.42 16 31 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.17 1.56 7.81 -52.49 -0.41 1.15 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.86 5.39 -51.93 -0.28 0.58 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.38 9.75 7.51 -40.82 -0.31 9.45 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 43 H 0.07 1.39 7.36 -51.93 -0.38 1.00 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 46 H 0.13 1.72 6.94 -51.93 -0.36 1.36 16 47 H 0.11 1.09 7.66 -51.93 -0.40 0.69 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -31.13 402.41 -10.61 -41.74 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.96 Total: 10.02 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -3.58 Total: -0.95 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.20 Total: -64.88 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.13 -10.61 -41.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036274922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.757 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds