Wall clock time and date at job start Wed Apr 1 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31886 * 118.95308 * 2 1 4 4 C 1.32136 * 120.96806 * 179.68344 * 3 2 1 5 5 C 1.39964 * 118.91996 * 0.61281 * 4 3 2 6 6 C 1.47828 * 120.93936 * 179.69565 * 5 4 3 7 7 O 1.21558 * 120.00323 * 126.13687 * 6 5 4 8 8 N 1.34783 * 120.00093 * 306.13483 * 6 5 4 9 9 C 1.46922 * 120.62977 * 354.23093 * 8 6 5 10 10 C 1.53192 * 108.77295 * 233.58640 * 9 8 6 11 11 C 1.53047 * 109.31104 * 305.35907 * 10 9 8 12 12 H 1.08996 * 109.45833 * 301.36298 * 11 10 9 13 13 N 1.46494 * 109.46129 * 181.38820 * 11 10 9 14 14 C 1.36934 * 120.00073 * 85.00033 * 13 11 10 15 15 H 1.07999 * 120.00074 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99955 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47273 * 270.00149 * 18 16 14 20 20 H 1.48499 * 109.47360 * 30.00064 * 18 16 14 21 21 H 1.48496 * 109.47168 * 150.00371 * 18 16 14 22 22 C 1.53040 * 109.53533 * 61.36687 * 11 10 9 23 23 H 1.09003 * 109.49710 * 58.58707 * 22 11 10 24 24 C 1.53005 * 109.49528 * 178.68393 * 22 11 10 25 25 C 1.46926 * 120.62924 * 174.20033 * 8 6 5 26 26 C 1.39930 * 118.12234 * 359.43032 * 5 4 3 27 27 C 1.50703 * 120.53754 * 180.25125 * 26 5 4 28 28 C 1.53003 * 117.49751 * 193.54526 * 27 26 5 29 29 C 1.53002 * 59.99979 * 252.50771 * 28 27 26 30 30 N 1.31851 * 118.95304 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46343 * 269.97369 * 1 2 3 32 32 H 1.09000 * 109.47383 * 29.96732 * 1 2 3 33 33 H 1.08997 * 109.47320 * 149.97587 * 1 2 3 34 34 H 1.08000 * 120.53820 * 180.31650 * 4 3 2 35 35 H 1.08998 * 109.59096 * 113.79251 * 9 8 6 36 36 H 1.09002 * 109.58495 * 353.36256 * 9 8 6 37 37 H 1.09000 * 109.50048 * 185.41598 * 10 9 8 38 38 H 1.08992 * 109.50399 * 65.31247 * 10 9 8 39 39 H 0.97001 * 119.99874 * 265.00052 * 13 11 10 40 40 H 0.96995 * 120.00368 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.46999 * 60.00452 * 24 22 11 42 42 H 1.09010 * 109.46648 * 180.02562 * 24 22 11 43 43 H 1.08991 * 109.47106 * 300.00022 * 24 22 11 44 44 H 1.09002 * 109.58650 * 246.20025 * 25 8 6 45 45 H 1.08993 * 109.59221 * 6.62931 * 25 8 6 46 46 H 1.09003 * 115.54914 * 339.24535 * 27 26 5 47 47 H 1.09000 * 117.49884 * 359.97438 * 28 27 26 48 48 H 1.08996 * 117.50207 * 145.01656 * 28 27 26 49 49 H 1.08998 * 117.49619 * 252.51570 * 29 28 27 50 50 H 1.08992 * 117.50275 * 107.48670 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2005 0.0063 5 6 4.1855 0.0000 -0.0002 6 6 5.6638 -0.0001 -0.0003 7 8 6.2717 -0.6254 0.8465 8 7 6.3377 0.6932 -0.9394 9 6 5.6226 1.3496 -2.0423 10 6 6.2325 0.8876 -3.3695 11 6 7.7400 1.1513 -3.3527 12 1 7.9208 2.2146 -3.1956 13 7 8.3215 0.7412 -4.6332 14 6 8.3150 1.6046 -5.6960 15 1 7.8815 2.5881 -5.5901 16 6 8.8665 1.2162 -6.9092 17 7 9.3953 0.0178 -7.0382 18 14 8.8582 2.3943 -8.3588 19 1 7.6138 2.2018 -9.1461 20 1 8.9177 3.7921 -7.8611 21 1 10.0364 2.1255 -9.2218 22 6 8.3868 0.3516 -2.2195 23 1 8.1853 -0.7101 -2.3623 24 6 9.8981 0.5903 -2.2241 25 6 7.8013 0.8074 -0.8792 26 6 3.4661 -1.2002 -0.0007 27 6 4.1857 -2.5243 -0.0018 28 6 3.3636 -3.7748 -0.3202 29 6 3.8408 -3.5168 1.1104 30 7 2.1453 -1.1537 -0.0005 31 1 -0.3632 -0.0005 1.0278 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3634 -0.8897 -0.5142 34 1 3.9817 2.1494 0.0114 35 1 5.7231 2.4310 -1.9507 36 1 4.5684 1.0743 -2.0094 37 1 5.7760 1.4392 -4.1913 38 1 6.0513 -0.1790 -3.5015 39 1 8.7112 -0.1420 -4.7282 40 1 9.7804 -0.2537 -7.8860 41 1 10.0987 1.6519 -2.0797 42 1 10.3584 0.0201 -1.4170 43 1 10.3139 0.2685 -3.1788 44 1 8.0795 1.8447 -0.6929 45 1 8.1846 0.1746 -0.0789 46 1 5.2181 -2.4980 -0.3506 47 1 2.3023 -3.6399 -0.5285 48 1 3.8550 -4.5715 -0.8787 49 1 4.6462 -4.1436 1.4931 50 1 3.0935 -3.2119 1.8429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036274922.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:47 Heat of formation + Delta-G solvation = 30.296036 kcal Electronic energy + Delta-G solvation = -30885.247793 eV Core-core repulsion = 26912.744889 eV Total energy + Delta-G solvation = -3972.502905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.62829 -41.03427 -39.08541 -38.31533 -36.25256 -34.97675 -34.37909 -33.89273 -33.06507 -31.11164 -30.06621 -27.71754 -26.79085 -26.49515 -24.99845 -24.00403 -23.31364 -23.13132 -22.21973 -21.47616 -20.58264 -19.07914 -19.05643 -18.38548 -17.47208 -17.36541 -16.78022 -16.51527 -16.15248 -15.98278 -15.70467 -15.48075 -15.25656 -15.06953 -14.91976 -14.49638 -14.33933 -13.99827 -13.76332 -13.56776 -13.36304 -13.23940 -13.08376 -12.98077 -12.85224 -12.81878 -12.72188 -12.57279 -12.48044 -12.37160 -12.15423 -12.08908 -11.85018 -11.68125 -11.54218 -11.30497 -11.17237 -11.02650 -10.85256 -10.45601 -10.32540 -9.76631 -8.97274 -7.91359 -5.18989 -0.58695 -0.17113 1.38981 1.48805 1.49142 1.57422 1.81740 2.39152 2.57716 2.68463 2.89098 2.92141 3.15909 3.24714 3.42023 3.69450 3.77004 3.78538 3.89263 3.92847 3.99151 4.01554 4.03786 4.10768 4.26304 4.33646 4.46687 4.49381 4.62474 4.68750 4.70047 4.74139 4.76761 4.79736 4.80750 4.84206 4.91818 4.93166 5.00503 5.03419 5.17136 5.20319 5.27695 5.31495 5.38552 5.47522 5.55536 5.59984 5.74295 6.21282 6.30135 6.88125 6.91300 7.36714 8.12701 8.35485 9.32208 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.002896 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.647051 B = 9666.260913 C =10251.189783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.327 3.673 3 N -0.532 5.532 4 C 0.195 3.805 5 C -0.252 4.252 6 C 0.576 3.424 7 O -0.558 6.558 8 N -0.595 5.595 9 C 0.116 3.884 10 C -0.142 4.142 11 C 0.181 3.819 12 H 0.054 0.946 13 N -0.731 5.731 14 C -0.230 4.230 15 H 0.079 0.921 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.966 3.034 19 H -0.291 1.291 20 H -0.267 1.267 21 H -0.301 1.301 22 C -0.100 4.100 23 H 0.050 0.950 24 C -0.129 4.129 25 C 0.127 3.873 26 C 0.250 3.750 27 C -0.149 4.149 28 C -0.141 4.141 29 C -0.135 4.135 30 N -0.527 5.527 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.198 0.802 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 0.086 18.324 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 N -0.246 5.246 4 C 0.028 3.972 5 C -0.259 4.259 6 C 0.363 3.637 7 O -0.437 6.437 8 N -0.326 5.326 9 C -0.007 4.007 10 C -0.183 4.183 11 C 0.072 3.928 12 H 0.072 0.928 13 N -0.370 5.370 14 C -0.362 4.362 15 H 0.097 0.903 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.796 3.204 19 H -0.218 1.218 20 H -0.192 1.192 21 H -0.228 1.228 22 C -0.120 4.120 23 H 0.069 0.931 24 C -0.187 4.187 25 C 0.005 3.995 26 C 0.104 3.896 27 C -0.168 4.168 28 C -0.178 4.178 29 C -0.173 4.173 30 N -0.242 5.242 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.215 0.785 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.131 0.869 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.353 -0.039 18.653 24.807 hybrid contribution 1.545 0.011 -1.444 2.115 sum -14.809 -0.029 17.209 22.704 Atomic orbital electron populations 1.20773 0.82695 1.05466 1.05310 1.24219 0.99976 0.82827 0.86840 1.68420 1.09494 1.30152 1.16546 1.23820 0.89465 0.97843 0.86050 1.21395 0.95485 0.97011 1.12048 1.17927 0.86284 0.78300 0.81187 1.90768 1.69815 1.43600 1.39551 1.48112 1.07936 1.51305 1.25291 1.21919 0.95708 0.98516 0.84521 1.22480 0.98900 1.00371 0.96513 1.20420 0.90535 0.97008 0.84814 0.92752 1.42590 1.70063 1.16323 1.08018 1.19601 1.29971 0.96357 0.90257 0.90321 1.25478 1.02339 0.98360 1.00651 1.69816 1.46586 1.20565 1.25257 0.85235 0.76356 0.79000 0.79765 1.21838 1.19196 1.22777 1.21611 0.96486 0.99339 0.94590 0.93150 1.21570 0.93859 1.02015 1.01276 1.21723 0.77690 1.03035 0.97035 1.20981 0.89101 0.93670 0.85872 1.20995 0.99035 0.86992 1.09761 1.23069 1.00716 0.95761 0.98262 1.22968 1.03329 0.99171 0.91804 1.68100 1.08389 1.30760 1.16990 0.87744 0.88182 0.88524 0.78488 0.88104 0.90105 0.91504 0.94320 0.79833 0.94302 0.91973 0.91623 0.94199 0.88754 0.89233 0.87400 0.87269 0.86947 0.86852 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.31 71.24 0.73 -0.29 16 2 C 0.33 6.70 7.64 138.71 1.06 7.76 16 3 N -0.53 -11.28 10.32 -186.79 -1.93 -13.21 16 4 C 0.20 4.02 9.11 85.07 0.77 4.80 16 5 C -0.25 -6.25 4.62 -19.91 -0.09 -6.34 16 6 C 0.58 15.85 6.35 86.78 0.55 16.40 16 7 O -0.56 -18.43 15.42 -3.90 -0.06 -18.49 16 8 N -0.60 -15.01 2.97 -822.33 -2.44 -17.46 16 9 C 0.12 2.72 5.63 86.36 0.49 3.20 16 10 C -0.14 -4.54 5.66 30.67 0.17 -4.37 16 11 C 0.18 6.47 2.19 45.02 0.10 6.57 16 12 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 13 N -0.73 -34.77 4.41 -322.82 -1.42 -36.19 16 14 C -0.23 -12.10 9.93 84.03 0.83 -11.26 16 15 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 16 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 18 Si 0.97 45.13 29.55 68.60 2.03 47.16 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 C -0.10 -3.11 2.46 -10.71 -0.03 -3.14 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 C -0.13 -3.96 9.03 71.98 0.65 -3.31 16 25 C 0.13 3.23 5.73 86.36 0.49 3.73 16 26 C 0.25 6.36 6.50 42.92 0.28 6.64 16 27 C -0.15 -3.62 5.28 -11.54 -0.06 -3.68 16 28 C -0.14 -2.71 10.04 30.60 0.31 -2.40 16 29 C -0.13 -2.64 10.23 30.60 0.31 -2.33 16 30 N -0.53 -12.27 9.43 -175.02 -1.65 -13.92 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.20 2.91 7.81 -2.91 -0.02 2.89 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.79 5.39 -2.39 -0.01 1.78 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.37 19.53 7.51 -92.71 -0.70 18.83 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.04 1.50 7.36 -2.39 -0.02 1.48 16 44 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 2.37 7.00 -2.39 -0.02 2.36 16 46 H 0.11 3.02 6.94 -2.39 -0.02 3.01 16 47 H 0.11 2.08 7.66 -2.39 -0.02 2.06 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.44 402.41 2.10 -66.33 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.25 Total: 35.90 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 7.04 Total: 8.18 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -7.16 Total: -139.08 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.44 2.10 -66.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036274922.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.631 kcal (2) G-P(sol) polarization free energy of solvation -68.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds