Wall clock time and date at job start Wed Apr 1 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50690 * 109.47324 * 2 1 4 4 N 1.31928 * 120.17097 * 275.39016 * 3 2 1 5 5 N 1.28278 * 122.32371 * 180.27688 * 4 3 2 6 6 C 1.31913 * 122.51996 * 359.72308 * 5 4 3 7 7 C 1.50704 * 120.01958 * 179.97438 * 6 5 4 8 8 C 1.38502 * 119.96524 * 359.97438 * 6 5 4 9 9 C 1.39728 * 120.17669 * 95.12870 * 3 2 1 10 10 C 1.48134 * 121.14146 * 0.02562 * 9 3 2 11 11 O 1.21513 * 120.00088 * 305.90501 * 10 9 3 12 12 N 1.34783 * 120.00149 * 125.90537 * 10 9 3 13 13 C 1.46590 * 119.67846 * 354.21319 * 12 10 9 14 14 C 1.53957 * 110.58321 * 227.81269 * 13 12 10 15 15 C 1.51523 * 107.34568 * 308.95736 * 14 13 12 16 16 H 1.09001 * 108.81451 * 306.54904 * 15 14 13 17 17 C 1.55358 * 107.78404 * 64.85582 * 15 14 13 18 18 H 1.08997 * 111.50726 * 51.15949 * 17 15 14 19 19 C 1.53735 * 100.22837 * 169.06377 * 17 15 14 20 20 C 1.55294 * 101.83965 * 320.90600 * 19 17 15 21 21 N 1.45465 * 117.34110 * 181.89041 * 15 14 13 22 22 C 1.36938 * 126.40677 * 30.62981 * 21 15 14 23 23 H 1.08006 * 119.99721 * 359.97438 * 22 21 15 24 24 C 1.38810 * 120.00444 * 179.97438 * 22 21 15 25 25 N 1.31619 * 119.99819 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00296 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47262 * 89.99449 * 26 24 22 28 28 H 1.48503 * 109.47128 * 210.00200 * 26 24 22 29 29 H 1.48505 * 109.46879 * 329.99842 * 26 24 22 30 30 C 1.47716 * 119.68531 * 174.21620 * 12 10 9 31 31 H 1.09003 * 109.46831 * 59.99721 * 1 2 3 32 32 H 1.08999 * 109.47566 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46812 * 300.00441 * 1 2 3 34 34 H 1.09001 * 109.46965 * 239.99117 * 2 1 3 35 35 H 1.09003 * 109.46831 * 120.00279 * 2 1 3 36 36 H 1.08996 * 109.46901 * 270.02010 * 7 6 5 37 37 H 1.08997 * 109.46739 * 30.02063 * 7 6 5 38 38 H 1.08998 * 109.47492 * 150.02081 * 7 6 5 39 39 H 1.08009 * 121.08877 * 179.97438 * 8 6 5 40 40 H 1.09002 * 109.25296 * 107.53376 * 13 12 10 41 41 H 1.08998 * 109.25854 * 348.09612 * 13 12 10 42 42 H 1.09000 * 109.88591 * 189.49339 * 14 13 12 43 43 H 1.09000 * 109.94058 * 68.44715 * 14 13 12 44 44 H 1.09003 * 110.96094 * 79.04265 * 19 17 15 45 45 H 1.09001 * 110.96076 * 202.77465 * 19 17 15 46 46 H 1.09005 * 109.91839 * 141.82387 * 20 19 17 47 47 H 1.08992 * 109.92430 * 262.93154 * 20 19 17 48 48 H 0.97003 * 120.00139 * 180.02562 * 25 24 22 49 49 H 1.09007 * 110.06829 * 8.73613 * 30 12 10 50 50 H 1.08997 * 110.06696 * 247.15847 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1524 2.0815 -1.1355 5 7 2.5804 3.2898 -1.1840 6 6 2.9270 3.9633 -0.1040 7 6 3.4233 5.3809 -0.2263 8 6 2.8345 3.3667 1.1426 9 6 2.3683 2.0469 1.2031 10 6 2.2414 1.3377 2.4974 11 8 1.1835 0.8278 2.8097 12 7 3.2992 1.2579 3.3288 13 6 4.6046 1.7626 2.8928 14 6 5.7092 0.7310 3.1861 15 6 5.5739 0.3252 4.6397 16 1 5.5774 1.2234 5.2572 17 6 4.2113 -0.4027 4.8043 18 1 4.0909 -1.1967 4.0673 19 6 4.3774 -0.9759 6.2211 20 6 5.8682 -1.4108 6.2161 21 7 6.5474 -0.6207 5.1627 22 6 7.8483 -0.7561 4.7570 23 1 8.2386 -0.1221 3.9745 24 6 8.6653 -1.7080 5.3513 25 7 8.1897 -2.4802 6.3051 26 14 10.4400 -1.8921 4.7983 27 1 11.3067 -1.0015 5.6112 28 1 10.8710 -3.3017 4.9787 29 1 10.5532 -1.5194 3.3652 30 6 3.1321 0.6627 4.6703 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5140 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.5063 5.3773 -0.3500 37 1 2.9603 5.8545 -1.0920 38 1 3.1624 5.9363 0.6745 39 1 3.1138 3.9011 2.0387 40 1 4.8275 2.6884 3.4233 41 1 4.5738 1.9613 1.8216 42 1 6.6887 1.1780 3.0156 43 1 5.5832 -0.1411 2.5446 44 1 4.1974 -0.2098 6.9753 45 1 3.7219 -1.8332 6.3742 46 1 6.3193 -1.2017 7.1861 47 1 5.9439 -2.4750 5.9932 48 1 8.7607 -3.1452 6.7207 49 1 2.1450 0.2084 4.7577 50 1 3.2629 1.4262 5.4372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036752699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:58 Heat of formation + Delta-G solvation = 47.585910 kcal Electronic energy + Delta-G solvation = -31318.417154 eV Core-core repulsion = 27346.663994 eV Total energy + Delta-G solvation = -3971.753160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73271 -40.14708 -38.41108 -35.75915 -35.24640 -34.00684 -32.77597 -31.85982 -31.70262 -29.67828 -28.39639 -28.08464 -25.92105 -24.99482 -24.50789 -23.17793 -22.57205 -22.09938 -20.31348 -20.01740 -19.31042 -18.02802 -17.49186 -16.42975 -16.30093 -16.22631 -15.47079 -15.24489 -14.96763 -14.67413 -14.35043 -14.27191 -14.02602 -13.93001 -13.70917 -13.39979 -13.25543 -13.10021 -12.79649 -12.69821 -12.57440 -12.52206 -11.99641 -11.77585 -11.61691 -11.53420 -11.23860 -11.05621 -10.97293 -10.86699 -10.83881 -10.59356 -10.33489 -10.19541 -10.14016 -9.97392 -9.77803 -9.70974 -9.68855 -9.55691 -8.74865 -8.69050 -6.91627 -5.78361 -3.12111 0.19259 0.54853 2.33384 2.71394 3.19247 3.34912 3.40061 3.42125 3.60773 3.93156 4.04004 4.17022 4.42565 4.45769 4.68987 4.81722 4.88685 4.95816 5.03446 5.09618 5.16066 5.18551 5.20774 5.30238 5.33414 5.37920 5.45484 5.48310 5.60343 5.61866 5.67700 5.76054 5.78959 5.86126 5.89003 5.98603 6.01390 6.04959 6.10977 6.14943 6.21440 6.34822 6.50460 6.53387 6.68986 6.95120 7.17110 7.47977 7.53882 7.74321 7.85954 8.17108 8.41362 9.12207 9.75765 10.43058 11.34022 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.003096 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.294290 B = 9042.392859 C = 9857.774212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C 0.109 3.891 4 N -0.234 5.234 5 N -0.230 5.230 6 C 0.061 3.939 7 C -0.100 4.100 8 C -0.085 4.085 9 C -0.113 4.113 10 C 0.561 3.439 11 O -0.522 6.522 12 N -0.595 5.595 13 C 0.108 3.892 14 C -0.130 4.130 15 C 0.168 3.832 16 H 0.020 0.980 17 C -0.125 4.125 18 H 0.081 0.919 19 C -0.135 4.135 20 C 0.177 3.823 21 N -0.594 5.594 22 C -0.229 4.229 23 H 0.078 0.922 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.127 3.873 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.156 0.844 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.039 0.961 47 H 0.055 0.945 48 H 0.253 0.747 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 12.170 -8.506 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.035 4.035 4 N -0.076 5.076 5 N -0.073 5.073 6 C -0.084 4.084 7 C -0.158 4.158 8 C -0.115 4.115 9 C -0.127 4.127 10 C 0.347 3.653 11 O -0.398 6.398 12 N -0.327 5.327 13 C -0.015 4.015 14 C -0.169 4.169 15 C 0.060 3.940 16 H 0.037 0.963 17 C -0.145 4.145 18 H 0.099 0.901 19 C -0.174 4.174 20 C 0.053 3.947 21 N -0.318 5.318 22 C -0.357 4.357 23 H 0.096 0.904 24 C -0.203 4.203 25 N -0.567 5.567 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 C 0.006 3.994 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.173 0.827 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.112 0.888 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.941 11.743 -9.907 20.087 hybrid contribution 1.369 -0.072 1.340 1.917 sum -11.572 11.670 -8.567 18.534 Atomic orbital electron populations 1.21679 0.93000 1.02636 1.02584 1.20499 0.97664 0.88689 1.04164 1.23005 0.93149 0.98676 0.88689 1.73014 1.09473 1.01297 1.23788 1.72834 1.06323 1.01153 1.26998 1.22848 0.96616 0.98947 0.89947 1.20696 1.02227 0.88736 1.04154 1.22498 0.95159 0.93979 0.99863 1.21130 1.00007 0.95797 0.95762 1.17990 0.84444 0.79989 0.82915 1.90792 1.27724 1.46282 1.75014 1.48274 1.08812 1.59792 1.15827 1.21926 0.82441 0.97599 0.99573 1.21899 0.97218 0.98444 0.99307 1.20622 0.88714 0.92705 0.91977 0.96276 1.22644 0.95662 0.97264 0.98967 0.90059 1.22716 1.00274 0.99823 0.94609 1.21532 0.85234 0.95946 0.92011 1.44195 1.07457 1.39213 1.40977 1.18976 0.84929 1.15545 1.16247 0.90415 1.24790 0.98381 0.98459 0.98629 1.69934 1.34964 1.24216 1.27613 0.86160 0.84686 0.77114 0.78035 1.21583 1.21649 1.20707 1.21723 1.00810 0.95652 0.81239 0.92538 0.91598 0.91422 0.89347 0.89642 0.89498 0.89743 0.90107 0.82685 0.91179 0.90818 0.90298 0.91313 0.92273 0.91942 0.94311 0.92679 0.93687 0.88836 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.82 37.16 0.36 -1.17 16 2 C -0.07 -0.83 5.62 -27.89 -0.16 -0.99 16 3 C 0.11 1.41 6.16 -82.00 -0.51 0.90 16 4 N -0.23 -3.21 11.42 33.81 0.39 -2.83 16 5 N -0.23 -2.94 11.41 33.57 0.38 -2.56 16 6 C 0.06 0.60 6.86 -82.46 -0.57 0.04 16 7 C -0.10 -0.61 10.19 36.01 0.37 -0.24 16 8 C -0.09 -0.84 7.75 -38.78 -0.30 -1.14 16 9 C -0.11 -1.37 4.52 -104.58 -0.47 -1.84 16 10 C 0.56 7.56 6.17 -12.19 -0.08 7.48 16 11 O -0.52 -8.18 14.43 5.35 0.08 -8.10 16 12 N -0.59 -7.73 3.00 -173.49 -0.52 -8.25 16 13 C 0.11 1.30 5.39 -3.49 -0.02 1.28 16 14 C -0.13 -2.05 5.48 -26.98 -0.15 -2.20 16 15 C 0.17 3.13 2.57 -67.98 -0.17 2.95 16 16 H 0.02 0.37 7.92 -51.93 -0.41 -0.04 16 17 C -0.12 -2.06 2.86 -89.37 -0.26 -2.32 16 18 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 19 C -0.14 -2.35 6.54 -25.13 -0.16 -2.52 16 20 C 0.18 4.08 5.45 -1.91 -0.01 4.07 16 21 N -0.59 -14.18 3.35 -163.09 -0.55 -14.72 16 22 C -0.23 -6.02 9.88 -15.06 -0.15 -6.17 16 23 H 0.08 1.96 7.21 -52.48 -0.38 1.58 16 24 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -26.26 10.44 55.49 0.58 -25.68 16 26 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 C 0.13 1.73 5.97 -3.76 -0.02 1.71 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.83 7.18 -51.93 -0.37 0.46 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.08 6.66 -51.93 -0.35 0.73 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 39 H 0.16 1.11 7.82 -52.48 -0.41 0.70 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.82 5.52 -51.93 -0.29 0.53 16 42 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 43 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 44 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 47 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 1.30 6.98 -51.92 -0.36 0.93 16 50 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -31.44 389.36 -9.12 -40.56 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.94 Total: -0.31 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.28 Total: -54.04 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.44 -9.12 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.143 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds