Wall clock time and date at job start Wed Apr 1 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50690 * 109.47324 * 2 1 4 4 N 1.31928 * 120.17097 * 275.39016 * 3 2 1 5 5 N 1.28278 * 122.32371 * 180.27688 * 4 3 2 6 6 C 1.31913 * 122.51996 * 359.72308 * 5 4 3 7 7 C 1.50704 * 120.01958 * 179.97438 * 6 5 4 8 8 C 1.38502 * 119.96524 * 359.97438 * 6 5 4 9 9 C 1.39728 * 120.17669 * 95.12870 * 3 2 1 10 10 C 1.48134 * 121.14146 * 0.02562 * 9 3 2 11 11 O 1.21513 * 120.00088 * 305.90501 * 10 9 3 12 12 N 1.34783 * 120.00149 * 125.90537 * 10 9 3 13 13 C 1.46590 * 119.67846 * 354.21319 * 12 10 9 14 14 C 1.53957 * 110.58321 * 227.81269 * 13 12 10 15 15 C 1.51523 * 107.34568 * 308.95736 * 14 13 12 16 16 H 1.09001 * 108.81451 * 306.54904 * 15 14 13 17 17 C 1.55358 * 107.78404 * 64.85582 * 15 14 13 18 18 H 1.08997 * 111.50726 * 51.15949 * 17 15 14 19 19 C 1.53735 * 100.22837 * 169.06377 * 17 15 14 20 20 C 1.55294 * 101.83965 * 320.90600 * 19 17 15 21 21 N 1.45465 * 117.34110 * 181.89041 * 15 14 13 22 22 C 1.36938 * 126.40677 * 30.62981 * 21 15 14 23 23 H 1.08006 * 119.99721 * 359.97438 * 22 21 15 24 24 C 1.38810 * 120.00444 * 179.97438 * 22 21 15 25 25 N 1.31619 * 119.99819 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00296 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47262 * 89.99449 * 26 24 22 28 28 H 1.48503 * 109.47128 * 210.00200 * 26 24 22 29 29 H 1.48505 * 109.46879 * 329.99842 * 26 24 22 30 30 C 1.47716 * 119.68531 * 174.21620 * 12 10 9 31 31 H 1.09003 * 109.46831 * 59.99721 * 1 2 3 32 32 H 1.08999 * 109.47566 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46812 * 300.00441 * 1 2 3 34 34 H 1.09001 * 109.46965 * 239.99117 * 2 1 3 35 35 H 1.09003 * 109.46831 * 120.00279 * 2 1 3 36 36 H 1.08996 * 109.46901 * 270.02010 * 7 6 5 37 37 H 1.08997 * 109.46739 * 30.02063 * 7 6 5 38 38 H 1.08998 * 109.47492 * 150.02081 * 7 6 5 39 39 H 1.08009 * 121.08877 * 179.97438 * 8 6 5 40 40 H 1.09002 * 109.25296 * 107.53376 * 13 12 10 41 41 H 1.08998 * 109.25854 * 348.09612 * 13 12 10 42 42 H 1.09000 * 109.88591 * 189.49339 * 14 13 12 43 43 H 1.09000 * 109.94058 * 68.44715 * 14 13 12 44 44 H 1.09003 * 110.96094 * 79.04265 * 19 17 15 45 45 H 1.09001 * 110.96076 * 202.77465 * 19 17 15 46 46 H 1.09005 * 109.91839 * 141.82387 * 20 19 17 47 47 H 1.08992 * 109.92430 * 262.93154 * 20 19 17 48 48 H 0.97003 * 120.00139 * 180.02562 * 25 24 22 49 49 H 1.09007 * 110.06829 * 8.73613 * 30 12 10 50 50 H 1.08997 * 110.06696 * 247.15847 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.1524 2.0815 -1.1355 5 7 2.5804 3.2898 -1.1840 6 6 2.9270 3.9633 -0.1040 7 6 3.4233 5.3809 -0.2263 8 6 2.8345 3.3667 1.1426 9 6 2.3683 2.0469 1.2031 10 6 2.2414 1.3377 2.4974 11 8 1.1835 0.8278 2.8097 12 7 3.2992 1.2579 3.3288 13 6 4.6046 1.7626 2.8928 14 6 5.7092 0.7310 3.1861 15 6 5.5739 0.3252 4.6397 16 1 5.5774 1.2234 5.2572 17 6 4.2113 -0.4027 4.8043 18 1 4.0909 -1.1967 4.0673 19 6 4.3774 -0.9759 6.2211 20 6 5.8682 -1.4108 6.2161 21 7 6.5474 -0.6207 5.1627 22 6 7.8483 -0.7561 4.7570 23 1 8.2386 -0.1221 3.9745 24 6 8.6653 -1.7080 5.3513 25 7 8.1897 -2.4802 6.3051 26 14 10.4400 -1.8921 4.7983 27 1 11.3067 -1.0015 5.6112 28 1 10.8710 -3.3017 4.9787 29 1 10.5532 -1.5194 3.3652 30 6 3.1321 0.6627 4.6703 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5140 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.5063 5.3773 -0.3500 37 1 2.9603 5.8545 -1.0920 38 1 3.1624 5.9363 0.6745 39 1 3.1138 3.9011 2.0387 40 1 4.8275 2.6884 3.4233 41 1 4.5738 1.9613 1.8216 42 1 6.6887 1.1780 3.0156 43 1 5.5832 -0.1411 2.5446 44 1 4.1974 -0.2098 6.9753 45 1 3.7219 -1.8332 6.3742 46 1 6.3193 -1.2017 7.1861 47 1 5.9439 -2.4750 5.9932 48 1 8.7607 -3.1452 6.7207 49 1 2.1450 0.2084 4.7577 50 1 3.2629 1.4262 5.4372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036752699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:57 Heat of formation + Delta-G solvation = 28.673297 kcal Electronic energy + Delta-G solvation = -31319.237266 eV Core-core repulsion = 27346.663994 eV Total energy + Delta-G solvation = -3972.573272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63732 -41.27900 -39.73615 -37.01629 -36.15920 -35.02444 -34.35853 -33.09481 -32.75008 -31.25969 -29.74470 -28.90341 -27.02185 -26.43668 -25.64671 -24.32078 -23.86231 -23.00945 -21.90400 -21.36262 -20.50194 -18.90975 -18.81704 -17.99100 -17.32747 -17.14012 -16.90364 -16.36715 -16.20801 -15.94853 -15.64924 -15.45648 -15.17205 -14.92303 -14.71039 -14.67140 -14.28774 -14.14390 -14.03043 -13.87619 -13.34693 -13.27858 -13.23263 -13.17306 -13.10332 -12.83897 -12.71252 -12.51603 -12.21543 -12.13639 -12.02444 -11.94621 -11.77938 -11.64356 -11.54373 -11.48200 -11.20920 -10.96520 -10.70791 -10.63739 -10.57759 -9.83802 -8.87095 -7.83682 -5.17804 -0.67330 -0.26181 1.31392 1.45957 1.46952 1.55060 1.70365 2.33063 2.50078 2.80147 3.00648 3.21410 3.35378 3.39436 3.46216 3.69736 3.75064 3.84855 3.95147 3.99227 4.10992 4.14581 4.17710 4.25511 4.29686 4.35919 4.45542 4.51574 4.63526 4.65982 4.68439 4.72884 4.79448 4.80053 4.85470 4.88982 4.92958 4.96484 5.01048 5.08532 5.13349 5.18956 5.24847 5.31066 5.39369 5.51119 5.53794 5.66876 5.77884 6.13081 6.21137 6.83033 7.09686 7.55463 7.80153 8.48171 9.28030 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.003096 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.294290 B = 9042.392859 C = 9857.774212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C 0.098 3.902 4 N -0.260 5.260 5 N -0.257 5.257 6 C 0.065 3.935 7 C -0.099 4.099 8 C -0.071 4.071 9 C -0.128 4.128 10 C 0.567 3.433 11 O -0.546 6.546 12 N -0.594 5.594 13 C 0.117 3.883 14 C -0.124 4.124 15 C 0.158 3.842 16 H 0.031 0.969 17 C -0.111 4.111 18 H 0.059 0.941 19 C -0.120 4.120 20 C 0.181 3.819 21 N -0.616 5.616 22 C -0.229 4.229 23 H 0.087 0.913 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.971 3.029 27 H -0.286 1.286 28 H -0.300 1.300 29 H -0.268 1.268 30 C 0.136 3.864 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.190 0.810 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.005 0.995 47 H 0.014 0.986 48 H 0.244 0.756 49 H 0.094 0.906 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 15.299 -9.128 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 C -0.047 4.047 4 N -0.100 5.100 5 N -0.100 5.100 6 C -0.080 4.080 7 C -0.157 4.157 8 C -0.100 4.100 9 C -0.142 4.142 10 C 0.354 3.646 11 O -0.425 6.425 12 N -0.326 5.326 13 C -0.005 4.005 14 C -0.164 4.164 15 C 0.051 3.949 16 H 0.049 0.951 17 C -0.131 4.131 18 H 0.078 0.922 19 C -0.159 4.159 20 C 0.057 3.943 21 N -0.341 5.341 22 C -0.358 4.358 23 H 0.105 0.895 24 C -0.261 4.261 25 N -0.603 5.603 26 Si 0.800 3.200 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.193 1.193 30 C 0.015 3.985 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.126 0.874 39 H 0.207 0.793 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.023 0.977 47 H 0.032 0.968 48 H 0.054 0.946 49 H 0.112 0.888 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.451 14.912 -10.575 22.696 hybrid contribution 1.521 -0.990 1.516 2.364 sum -11.931 13.922 -9.059 20.451 Atomic orbital electron populations 1.21612 0.92491 1.03240 1.01826 1.20488 0.98102 0.88617 1.03782 1.23093 0.93630 0.98991 0.89035 1.72964 1.10609 1.02100 1.24329 1.72764 1.07361 1.01134 1.28698 1.23457 0.95085 1.00203 0.89265 1.20875 1.02897 0.86323 1.05611 1.22895 0.93213 0.92817 1.01080 1.21071 1.01470 0.96960 0.94673 1.18098 0.84019 0.79488 0.83042 1.90784 1.28785 1.47340 1.75542 1.48262 1.09091 1.59657 1.15545 1.21937 0.80433 0.97143 1.01002 1.21817 0.98918 0.98817 0.96804 1.20884 0.88281 0.92061 0.93644 0.95131 1.22475 0.95779 0.97321 0.97531 0.92208 1.22577 0.96099 1.01135 0.96060 1.21299 0.88829 0.93918 0.90299 1.44487 1.07791 1.40279 1.41500 1.19389 0.86216 1.14722 1.15492 0.89518 1.25589 1.02206 0.98969 0.99380 1.70160 1.35856 1.25065 1.29185 0.85177 0.80324 0.76280 0.78187 1.21329 1.22662 1.19301 1.21624 0.99369 0.95233 0.82275 0.92333 0.90349 0.92951 0.88745 0.90870 0.88084 0.89712 0.87384 0.79251 0.87893 0.89407 0.90445 0.93463 0.89862 0.90517 0.97714 0.96801 0.94646 0.88755 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.82 71.98 0.71 -2.16 16 2 C -0.07 -1.65 5.62 29.85 0.17 -1.48 16 3 C 0.10 2.43 6.16 42.90 0.26 2.70 16 4 N -0.26 -6.92 11.42 -46.95 -0.54 -7.45 16 5 N -0.26 -6.18 11.41 -47.70 -0.54 -6.72 16 6 C 0.06 1.09 6.86 42.61 0.29 1.38 16 7 C -0.10 -0.81 10.19 71.24 0.73 -0.08 16 8 C -0.07 -1.11 7.75 22.79 0.18 -0.94 16 9 C -0.13 -2.82 4.52 -19.84 -0.09 -2.91 16 10 C 0.57 13.98 6.17 86.87 0.54 14.52 16 11 O -0.55 -16.34 14.43 -3.76 -0.05 -16.39 16 12 N -0.59 -13.61 3.00 -821.10 -2.46 -16.07 16 13 C 0.12 2.39 5.39 86.69 0.47 2.86 16 14 C -0.12 -3.71 5.48 30.43 0.17 -3.54 16 15 C 0.16 5.65 2.57 45.51 0.12 5.76 16 16 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 17 C -0.11 -3.50 2.86 -9.99 -0.03 -3.53 16 18 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 19 C -0.12 -4.07 6.54 31.63 0.21 -3.86 16 20 C 0.18 8.65 5.45 86.85 0.47 9.12 16 21 N -0.62 -29.72 3.35 -669.90 -2.24 -31.96 16 22 C -0.23 -12.18 9.88 84.03 0.83 -11.35 16 23 H 0.09 4.33 7.21 -2.91 -0.02 4.31 16 24 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 25 N -0.95 -56.76 10.44 21.65 0.23 -56.53 16 26 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 27 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 30 C 0.14 3.31 5.97 85.90 0.51 3.82 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.28 7.18 -2.38 -0.02 1.26 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.86 6.66 -2.39 -0.02 1.84 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.33 8.09 -2.39 -0.02 0.31 16 39 H 0.19 1.60 7.82 -2.91 -0.02 1.58 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.61 5.52 -2.39 -0.01 1.59 16 42 H 0.08 2.33 7.62 -2.39 -0.02 2.31 16 43 H 0.05 1.60 8.12 -2.39 -0.02 1.58 16 44 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.00 0.25 7.77 -2.38 -0.02 0.23 16 47 H 0.01 0.75 7.21 -2.39 -0.02 0.74 16 48 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.09 2.36 6.98 -2.38 -0.02 2.34 16 50 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -72.37 389.36 3.34 -69.03 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.94 Total: 12.24 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.99 Total: 6.95 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -5.56 Total: -118.74 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.05 Total: -16.39 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.37 3.34 -69.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.706 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds