Wall clock time and date at job start Wed Apr 1 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47093 * 2 1 4 4 N 1.31932 * 120.16940 * 275.13178 * 3 2 1 5 5 N 1.28267 * 122.32338 * 179.97438 * 4 3 2 6 6 C 1.31919 * 122.52130 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.02102 * 179.97438 * 6 5 4 8 8 C 1.38511 * 119.96514 * 359.72184 * 6 5 4 9 9 C 1.39725 * 120.17610 * 95.11567 * 3 2 1 10 10 C 1.48139 * 121.14257 * 0.02562 * 9 3 2 11 11 O 1.21517 * 119.99734 * 306.21805 * 10 9 3 12 12 N 1.34777 * 120.00074 * 126.22020 * 10 9 3 13 13 C 1.46823 * 120.30253 * 354.25504 * 12 10 9 14 14 C 1.52967 * 107.39100 * 235.04190 * 13 12 10 15 15 C 1.53546 * 109.95400 * 298.40514 * 14 13 12 16 16 H 1.09002 * 110.98230 * 289.24570 * 15 14 13 17 17 C 1.51781 * 112.12106 * 53.07459 * 15 14 13 18 18 H 1.08995 * 104.98801 * 206.70164 * 17 15 14 19 19 C 1.53387 * 105.83089 * 95.17971 * 17 15 14 20 20 C 1.54465 * 102.54498 * 29.49190 * 19 17 15 21 21 N 1.46870 * 106.65435 * 332.26370 * 20 19 17 22 22 C 1.36939 * 125.33659 * 195.40936 * 21 20 19 23 23 H 1.08000 * 119.99926 * 180.02562 * 22 21 20 24 24 C 1.38807 * 119.99806 * 0.02562 * 22 21 20 25 25 N 1.31617 * 120.00012 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99867 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46929 * 89.99698 * 26 24 22 28 28 H 1.48493 * 109.47256 * 209.99779 * 26 24 22 29 29 H 1.48502 * 109.46878 * 329.99846 * 26 24 22 30 30 C 1.45642 * 120.30096 * 174.27721 * 12 10 9 31 31 H 1.09001 * 109.47387 * 60.00213 * 1 2 3 32 32 H 1.09005 * 109.47464 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46795 * 300.00199 * 1 2 3 34 34 H 1.08998 * 109.47099 * 239.99628 * 2 1 3 35 35 H 1.08999 * 109.46878 * 119.99667 * 2 1 3 36 36 H 1.08999 * 109.46932 * 89.99944 * 7 6 5 37 37 H 1.09000 * 109.47579 * 210.00367 * 7 6 5 38 38 H 1.09001 * 109.46982 * 330.00271 * 7 6 5 39 39 H 1.08000 * 121.08881 * 180.30727 * 8 6 5 40 40 H 1.09001 * 109.87389 * 354.51363 * 13 12 10 41 41 H 1.09001 * 109.87223 * 115.49479 * 13 12 10 42 42 H 1.08993 * 109.38621 * 58.68128 * 14 13 12 43 43 H 1.08999 * 109.38242 * 178.47424 * 14 13 12 44 44 H 1.09002 * 110.79520 * 271.22796 * 19 17 15 45 45 H 1.09004 * 110.79188 * 147.75848 * 19 17 15 46 46 H 1.08992 * 110.02690 * 212.96507 * 20 19 17 47 47 H 1.09002 * 110.02143 * 91.55257 * 20 19 17 48 48 H 0.97008 * 119.99749 * 179.97438 * 25 24 22 49 49 H 1.08998 * 108.44902 * 22.16168 * 30 12 10 50 50 H 1.08997 * 108.44354 * 264.84654 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1571 2.0799 -1.1360 5 7 2.5799 3.2900 -1.1840 6 6 2.9215 3.9652 -0.1035 7 6 3.4118 5.3850 -0.2253 8 6 2.8243 3.3704 1.1436 9 6 2.3680 2.0471 1.2031 10 6 2.2408 1.3379 2.4975 11 8 1.1844 0.8232 2.8070 12 7 3.2966 1.2638 3.3319 13 6 4.6089 1.7720 2.9131 14 6 5.6147 0.6314 3.0779 15 6 5.6910 0.2089 4.5521 16 1 6.1833 0.9740 5.1525 17 6 4.3230 -0.1112 5.1264 18 1 4.4137 0.0821 6.1952 19 6 4.1579 -1.6303 4.9923 20 6 5.6146 -2.1356 5.0854 21 7 6.4694 -1.0495 4.5889 22 6 7.7826 -1.1794 4.2227 23 1 8.3319 -0.3197 3.8684 24 6 8.4074 -2.4160 4.3069 25 7 7.7380 -3.4635 4.7392 26 14 10.1989 -2.5931 3.8081 27 1 11.0675 -2.3515 4.9882 28 1 10.4357 -3.9651 3.2918 29 1 10.5177 -1.6033 2.7479 30 6 3.1464 0.6783 4.6569 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.5650 6.0685 -0.1627 37 1 4.1115 5.5985 0.5829 38 1 3.9137 5.5151 -1.1841 39 1 3.0944 3.9080 2.0405 40 1 4.5697 2.0835 1.8693 41 1 4.8971 2.6153 3.5407 42 1 5.3008 -0.2183 2.4718 43 1 6.5986 0.9664 2.7493 44 1 3.7197 -1.8883 4.0281 45 1 3.5572 -2.0280 5.8104 46 1 5.7419 -3.0235 4.4662 47 1 5.8650 -2.3635 6.1215 48 1 8.1746 -4.3278 4.7977 49 1 2.2740 0.0249 4.6484 50 1 2.9636 1.4819 5.3703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036752700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:02 Heat of formation + Delta-G solvation = 48.384545 kcal Electronic energy + Delta-G solvation = -31529.200931 eV Core-core repulsion = 27557.482403 eV Total energy + Delta-G solvation = -3971.718528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69885 -40.13997 -38.37546 -35.74629 -35.19859 -34.00989 -32.88517 -31.79214 -31.73529 -29.66079 -28.41223 -28.12521 -26.00525 -25.08725 -24.51194 -23.25920 -22.83803 -22.08714 -20.37809 -20.17398 -18.28885 -17.96238 -17.47726 -16.96306 -16.26837 -16.14046 -15.62309 -15.17846 -14.87264 -14.58584 -14.57340 -14.20636 -13.93578 -13.87217 -13.66582 -13.40837 -13.15087 -13.09441 -12.75282 -12.70034 -12.48231 -12.35248 -11.94873 -11.88790 -11.64093 -11.42451 -11.20891 -11.14792 -11.00752 -10.91440 -10.80739 -10.54025 -10.29830 -10.17216 -10.11065 -9.91949 -9.77667 -9.69808 -9.66113 -9.50420 -8.72562 -8.60711 -6.91165 -5.73843 -3.12017 0.23061 0.58536 2.36550 2.77140 3.23329 3.35320 3.40356 3.42610 3.64639 3.97718 4.07915 4.20675 4.41659 4.48915 4.72851 4.85096 4.93203 5.00306 5.07176 5.16106 5.17777 5.22616 5.23785 5.25351 5.33767 5.37406 5.45163 5.47433 5.64293 5.65260 5.75868 5.79524 5.84911 5.88738 5.89768 5.93298 6.04432 6.13300 6.18155 6.20951 6.26681 6.47744 6.55262 6.61627 6.78803 6.96860 7.22587 7.48927 7.58657 7.80107 7.90503 8.25209 8.45223 9.16250 9.76325 10.40422 11.33391 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003273 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.962746 B = 8552.854456 C = 9177.242163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C 0.111 3.889 4 N -0.234 5.234 5 N -0.230 5.230 6 C 0.060 3.940 7 C -0.099 4.099 8 C -0.086 4.086 9 C -0.110 4.110 10 C 0.562 3.438 11 O -0.522 6.522 12 N -0.588 5.588 13 C 0.100 3.900 14 C -0.139 4.139 15 C 0.174 3.826 16 H 0.042 0.958 17 C -0.109 4.109 18 H 0.067 0.933 19 C -0.135 4.135 20 C 0.166 3.834 21 N -0.599 5.599 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.135 3.865 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.155 0.845 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.018 0.982 48 H 0.252 0.748 49 H 0.089 0.911 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 14.548 -5.018 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.034 4.034 4 N -0.076 5.076 5 N -0.073 5.073 6 C -0.085 4.085 7 C -0.158 4.158 8 C -0.115 4.115 9 C -0.125 4.125 10 C 0.348 3.652 11 O -0.398 6.398 12 N -0.320 5.320 13 C -0.023 4.023 14 C -0.179 4.179 15 C 0.066 3.934 16 H 0.060 0.940 17 C -0.128 4.128 18 H 0.085 0.915 19 C -0.174 4.174 20 C 0.042 3.958 21 N -0.324 5.324 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.013 3.987 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.173 0.827 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.036 0.964 48 H 0.063 0.937 49 H 0.107 0.893 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.013 14.049 -6.459 19.581 hybrid contribution 1.347 -0.068 1.457 1.986 sum -10.666 13.982 -5.002 18.283 Atomic orbital electron populations 1.21676 0.93020 1.02641 1.02514 1.20506 0.97607 0.88673 1.04285 1.23008 0.92980 0.98726 0.88647 1.73016 1.09485 1.01280 1.23774 1.72829 1.06369 1.01072 1.27036 1.22842 0.96711 0.98952 0.89957 1.20689 1.01824 0.88768 1.04486 1.22479 0.95332 0.93910 0.99806 1.21084 0.99997 0.95728 0.95682 1.17915 0.84294 0.80166 0.82815 1.90794 1.27730 1.46118 1.75204 1.47701 1.09487 1.58932 1.15831 1.22008 0.82409 0.97947 0.99943 1.22518 0.97766 0.96903 1.00719 1.20534 0.89622 0.90622 0.92578 0.94021 1.20748 0.94308 0.96867 1.00924 0.91463 1.22686 1.00743 0.93399 1.00557 1.21398 0.83692 0.92573 0.98181 1.44709 1.08593 1.02452 1.76614 1.18992 0.85152 0.94605 1.36690 0.90532 1.24786 0.98322 0.95775 1.01460 1.69926 1.34980 0.99684 1.52181 0.86134 0.84548 0.77084 0.78077 1.21622 1.21659 1.20705 1.20439 0.99447 0.97257 0.81589 0.92575 0.91581 0.91456 0.89310 0.89570 0.89773 0.90005 0.89668 0.82714 0.90728 0.90845 0.91253 0.90985 0.92528 0.92014 0.89858 0.96359 0.93730 0.89291 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.82 37.16 0.36 -1.24 16 2 C -0.07 -0.89 5.62 -27.88 -0.16 -1.05 16 3 C 0.11 1.49 6.16 -81.99 -0.50 0.99 16 4 N -0.23 -3.33 11.42 33.81 0.39 -2.95 16 5 N -0.23 -3.04 11.41 33.57 0.38 -2.65 16 6 C 0.06 0.61 6.86 -82.45 -0.57 0.04 16 7 C -0.10 -0.62 10.19 36.01 0.37 -0.26 16 8 C -0.09 -0.86 7.65 -38.78 -0.30 -1.16 16 9 C -0.11 -1.39 4.62 -104.58 -0.48 -1.88 16 10 C 0.56 7.81 6.19 -12.20 -0.08 7.73 16 11 O -0.52 -8.38 14.47 5.35 0.08 -8.31 16 12 N -0.59 -7.79 3.00 -177.34 -0.53 -8.32 16 13 C 0.10 1.23 5.68 -3.88 -0.02 1.21 16 14 C -0.14 -2.28 5.19 -26.47 -0.14 -2.42 16 15 C 0.17 3.21 3.43 -67.44 -0.23 2.98 16 16 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.11 -1.74 2.45 -92.87 -0.23 -1.97 16 18 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 19 C -0.14 -2.45 6.37 -25.76 -0.16 -2.61 16 20 C 0.17 3.88 5.54 -3.07 -0.02 3.87 16 21 N -0.60 -14.25 3.04 -163.71 -0.50 -14.75 16 22 C -0.23 -5.95 9.83 -15.06 -0.15 -6.10 16 23 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 24 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 25 N -0.92 -26.25 10.22 55.49 0.57 -25.68 16 26 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 C 0.14 1.83 5.99 -6.34 -0.04 1.80 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.86 7.17 -51.93 -0.37 0.48 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.17 6.65 -51.93 -0.35 0.82 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.16 1.12 7.85 -52.49 -0.41 0.71 16 40 H 0.07 0.85 5.32 -51.93 -0.28 0.58 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 2.22 6.41 -51.93 -0.33 1.89 16 47 H 0.02 0.47 8.12 -51.93 -0.42 0.04 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 1.28 6.75 -51.93 -0.35 0.93 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -31.35 389.72 -9.17 -40.51 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.97 Total: 0.14 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.43 Total: -0.36 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.31 Total: -54.35 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.35 -9.17 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.895 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds