Wall clock time and date at job start Wed Apr 1 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46843 * 2 1 4 4 N 1.31927 * 120.17140 * 275.10381 * 3 2 1 5 5 N 1.28271 * 122.32552 * 180.02562 * 4 3 2 6 6 C 1.31918 * 122.51723 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.01705 * 180.02562 * 6 5 4 8 8 C 1.38506 * 119.96902 * 359.72491 * 6 5 4 9 9 C 1.39726 * 120.17171 * 95.12935 * 3 2 1 10 10 C 1.48133 * 121.14472 * 359.97438 * 9 3 2 11 11 O 1.21517 * 120.00133 * 306.40498 * 10 9 3 12 12 N 1.34780 * 120.00077 * 126.39834 * 10 9 3 13 13 C 1.46531 * 120.97291 * 354.24407 * 12 10 9 14 14 C 1.51782 * 110.13165 * 233.78963 * 13 12 10 15 15 C 1.49522 * 115.06747 * 318.38099 * 14 13 12 16 16 H 1.08997 * 105.92274 * 157.46575 * 15 14 13 17 17 C 1.52675 * 116.96344 * 40.06478 * 15 14 13 18 18 H 1.09004 * 112.02762 * 83.76491 * 17 15 14 19 19 C 1.56115 * 101.70968 * 203.76441 * 17 15 14 20 20 C 1.55098 * 101.12075 * 37.84122 * 19 17 15 21 21 N 1.46253 * 113.52071 * 272.75869 * 15 14 13 22 22 C 1.36938 * 125.96248 * 315.02211 * 21 15 14 23 23 H 1.08002 * 119.99998 * 359.97438 * 22 21 15 24 24 C 1.38815 * 119.99788 * 180.02562 * 22 21 15 25 25 N 1.31622 * 120.00133 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99935 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47455 * 59.99568 * 26 24 22 28 28 H 1.48499 * 109.47043 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46723 * 299.99771 * 26 24 22 30 30 C 1.45039 * 120.59350 * 174.84279 * 12 10 9 31 31 H 1.08996 * 109.47538 * 60.00406 * 1 2 3 32 32 H 1.09005 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47279 * 299.99823 * 1 2 3 34 34 H 1.09005 * 109.47211 * 240.00285 * 2 1 3 35 35 H 1.08998 * 109.47270 * 120.00325 * 2 1 3 36 36 H 1.09000 * 109.47378 * 90.00595 * 7 6 5 37 37 H 1.09007 * 109.47599 * 210.00111 * 7 6 5 38 38 H 1.08996 * 109.47700 * 330.00422 * 7 6 5 39 39 H 1.07993 * 121.09177 * 180.28623 * 8 6 5 40 40 H 1.08997 * 109.36364 * 113.58279 * 13 12 10 41 41 H 1.09009 * 109.36232 * 353.98603 * 13 12 10 42 42 H 1.09001 * 108.36598 * 196.93721 * 14 13 12 43 43 H 1.09003 * 108.22933 * 79.72669 * 14 13 12 44 44 H 1.08999 * 111.09339 * 155.81143 * 19 17 15 45 45 H 1.08994 * 111.10143 * 279.86320 * 19 17 15 46 46 H 1.08994 * 110.35493 * 81.81538 * 20 19 17 47 47 H 1.09003 * 110.35207 * 204.10224 * 20 19 17 48 48 H 0.96994 * 119.99723 * 179.97438 * 25 24 22 49 49 H 1.09001 * 110.02624 * 0.92060 * 30 12 10 50 50 H 1.08998 * 108.14284 * 241.25524 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1576 2.0798 -1.1360 5 7 2.5812 3.2896 -1.1841 6 6 2.9233 3.9647 -0.1035 7 6 3.4136 5.3844 -0.2253 8 6 2.8257 3.3700 1.1435 9 6 2.3681 2.0470 1.2031 10 6 2.2402 1.3381 2.4975 11 8 1.1844 0.8212 2.8054 12 7 3.2948 1.2663 3.3337 13 6 4.6107 1.7712 2.9329 14 6 5.6615 0.6906 3.1117 15 6 5.5362 -0.1135 4.3661 16 1 6.0522 -1.0536 4.1714 17 6 4.1252 -0.5002 4.8025 18 1 3.7724 -1.3986 4.2958 19 6 4.3180 -0.7250 6.3353 20 6 5.3221 0.4059 6.6794 21 7 6.2250 0.4806 5.5113 22 6 7.4871 1.0120 5.5036 23 1 8.0661 1.0152 4.5919 24 6 8.0226 1.5457 6.6678 25 7 7.3171 1.5414 7.7790 26 14 9.7439 2.2713 6.6571 27 1 9.8015 3.3948 5.6878 28 1 10.0790 2.7705 8.0149 29 1 10.7197 1.2245 6.2602 30 6 3.1542 0.6737 4.6500 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.5668 6.0679 -0.1622 37 1 4.1136 5.5977 0.5826 38 1 3.9150 5.5147 -1.1843 39 1 3.0965 3.9073 2.0403 40 1 4.8700 2.6327 3.5482 41 1 4.5782 2.0738 1.8862 42 1 6.6441 1.1622 3.1029 43 1 5.6005 0.0116 2.2611 44 1 3.3788 -0.5926 6.8724 45 1 4.7478 -1.7061 6.5371 46 1 4.7969 1.3515 6.8132 47 1 5.8844 0.1531 7.5784 48 1 7.6915 1.9139 8.5925 49 1 2.1324 0.3224 4.7940 50 1 3.3862 1.4372 5.3925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036752702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:10 Heat of formation + Delta-G solvation = 48.773612 kcal Electronic energy + Delta-G solvation = -31668.202326 eV Core-core repulsion = 27696.500669 eV Total energy + Delta-G solvation = -3971.701657 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66965 -40.14860 -38.39756 -35.64754 -35.15671 -33.92813 -32.86605 -31.99476 -31.76725 -29.43854 -28.26520 -27.82554 -26.17238 -25.11914 -24.51844 -23.52818 -22.76688 -22.09813 -20.30301 -20.04995 -18.51103 -17.95739 -17.33330 -16.43057 -16.29288 -16.19815 -15.50013 -15.31436 -14.87661 -14.71971 -14.35250 -14.21042 -14.04356 -13.91784 -13.71807 -13.36822 -13.13935 -12.95539 -12.77581 -12.64725 -12.49185 -12.22940 -11.97430 -11.85874 -11.60303 -11.30835 -11.22061 -11.10785 -11.00384 -10.84070 -10.66831 -10.47539 -10.35474 -10.27046 -10.12482 -10.03037 -9.76338 -9.71439 -9.65604 -9.57554 -8.71738 -8.47128 -6.90960 -5.76521 -3.15950 0.25997 0.60533 2.42169 2.88299 3.25856 3.32478 3.37752 3.38974 3.66244 4.05050 4.09947 4.24551 4.39234 4.54581 4.74615 4.93621 4.97385 5.07787 5.13296 5.17184 5.18494 5.24199 5.30068 5.35599 5.37862 5.41455 5.46373 5.56636 5.65487 5.67714 5.69594 5.78990 5.79788 5.92815 5.96796 6.01970 6.08831 6.16681 6.17841 6.20520 6.33635 6.47879 6.52936 6.61675 6.80674 6.86252 7.36227 7.40773 7.53086 7.76268 7.97702 8.24284 8.46436 9.11365 9.73690 10.39881 11.29327 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003471 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.315875 B = 8065.626524 C = 9442.030656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C 0.108 3.892 4 N -0.236 5.236 5 N -0.231 5.231 6 C 0.062 3.938 7 C -0.100 4.100 8 C -0.084 4.084 9 C -0.111 4.111 10 C 0.561 3.439 11 O -0.525 6.525 12 N -0.586 5.586 13 C 0.113 3.887 14 C -0.136 4.136 15 C 0.171 3.829 16 H 0.012 0.988 17 C -0.106 4.106 18 H 0.078 0.922 19 C -0.142 4.142 20 C 0.156 3.844 21 N -0.593 5.593 22 C -0.225 4.225 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.920 5.920 26 Si 0.911 3.089 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.119 3.881 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.156 0.844 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.014 0.986 47 H 0.099 0.901 48 H 0.253 0.747 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 1.916 -11.929 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.037 4.037 4 N -0.077 5.077 5 N -0.074 5.074 6 C -0.082 4.082 7 C -0.159 4.159 8 C -0.114 4.114 9 C -0.125 4.125 10 C 0.347 3.653 11 O -0.402 6.402 12 N -0.317 5.317 13 C -0.009 4.009 14 C -0.176 4.176 15 C 0.064 3.936 16 H 0.029 0.971 17 C -0.126 4.126 18 H 0.096 0.904 19 C -0.181 4.181 20 C 0.032 3.968 21 N -0.318 5.318 22 C -0.353 4.353 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.567 5.567 26 Si 0.742 3.258 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.004 4.004 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.174 0.826 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.032 0.968 47 H 0.117 0.883 48 H 0.064 0.936 49 H 0.107 0.893 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.542 1.742 -13.234 17.009 hybrid contribution 1.281 0.546 1.565 2.095 sum -9.260 2.288 -11.669 15.072 Atomic orbital electron populations 1.21676 0.93049 1.02549 1.02634 1.20480 0.97637 0.88752 1.03980 1.22978 0.93314 0.98717 0.88705 1.72991 1.09571 1.01372 1.23797 1.72822 1.06514 1.01048 1.27046 1.22848 0.96513 0.98956 0.89916 1.20704 1.01915 0.88730 1.04530 1.22540 0.94969 0.93964 0.99913 1.21118 0.99893 0.95754 0.95747 1.17927 0.84362 0.80183 0.82853 1.90783 1.27739 1.46512 1.75185 1.47542 1.09376 1.58644 1.16095 1.21461 0.81675 0.98087 0.99697 1.21265 0.99557 0.97830 0.98923 1.19442 0.91181 0.94780 0.88242 0.97072 1.22305 0.95061 0.96936 0.98291 0.90386 1.23293 1.00110 1.01384 0.93334 1.21927 0.89382 0.92433 0.93068 1.44495 1.12991 1.70623 1.03735 1.18911 0.89103 1.31638 0.95643 0.90550 1.24752 0.98496 1.01233 0.95764 1.69829 1.36288 1.50632 0.99980 0.86215 0.83969 0.78936 0.76725 1.21235 1.21572 1.21160 1.21484 1.00536 0.96031 0.82300 0.92571 0.91676 0.91362 0.89482 0.89694 0.89721 0.89859 0.89686 0.82594 0.90484 0.91198 0.89609 0.93217 0.91957 0.91819 0.96770 0.88340 0.93630 0.89264 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.82 37.16 0.36 -1.18 16 2 C -0.07 -0.81 5.62 -27.88 -0.16 -0.97 16 3 C 0.11 1.43 6.16 -81.99 -0.50 0.92 16 4 N -0.24 -3.33 11.42 33.81 0.39 -2.94 16 5 N -0.23 -3.10 11.41 33.57 0.38 -2.72 16 6 C 0.06 0.68 6.86 -82.46 -0.57 0.11 16 7 C -0.10 -0.73 10.19 36.00 0.37 -0.37 16 8 C -0.08 -0.94 7.69 -38.78 -0.30 -1.24 16 9 C -0.11 -1.45 4.64 -104.58 -0.49 -1.93 16 10 C 0.56 8.15 6.20 -12.20 -0.08 8.08 16 11 O -0.53 -8.66 14.42 5.35 0.08 -8.58 16 12 N -0.59 -8.56 2.93 -176.48 -0.52 -9.08 16 13 C 0.11 1.61 5.74 -4.64 -0.03 1.59 16 14 C -0.14 -2.22 5.59 -29.07 -0.16 -2.38 16 15 C 0.17 3.24 2.66 -69.95 -0.19 3.05 16 16 H 0.01 0.24 8.08 -51.93 -0.42 -0.18 16 17 C -0.11 -1.75 3.72 -89.06 -0.33 -2.08 16 18 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.14 -2.49 6.46 -23.95 -0.15 -2.64 16 20 C 0.16 3.48 5.35 -2.21 -0.01 3.47 16 21 N -0.59 -13.68 3.30 -165.65 -0.55 -14.23 16 22 C -0.22 -5.72 9.57 -15.06 -0.14 -5.87 16 23 H 0.08 1.87 7.01 -52.49 -0.37 1.51 16 24 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 25 N -0.92 -25.30 10.18 55.49 0.56 -24.74 16 26 Si 0.91 20.90 29.55 -169.99 -5.02 15.88 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 C 0.12 1.85 5.42 -4.77 -0.03 1.82 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.86 7.17 -51.93 -0.37 0.49 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.05 6.65 -51.93 -0.35 0.71 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.16 1.43 7.85 -52.49 -0.41 1.02 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 0.87 5.37 -51.92 -0.28 0.60 16 42 H 0.09 1.52 6.60 -51.93 -0.34 1.18 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.96 7.98 -51.93 -0.41 0.55 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.01 0.34 7.10 -51.93 -0.37 -0.03 16 47 H 0.10 2.52 6.09 -51.93 -0.32 2.21 16 48 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 49 H 0.09 1.36 6.97 -51.93 -0.36 1.00 16 50 H 0.08 1.34 6.49 -51.93 -0.34 1.01 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -29.72 384.76 -9.07 -38.79 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.70 Total: 1.69 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.49 Total: 0.12 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.27 Total: -53.70 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.72 -9.07 -38.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.563 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds