Wall clock time and date at job start Wed Apr 1 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46843 * 2 1 4 4 N 1.31927 * 120.17140 * 275.10381 * 3 2 1 5 5 N 1.28271 * 122.32552 * 180.02562 * 4 3 2 6 6 C 1.31918 * 122.51723 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.01705 * 180.02562 * 6 5 4 8 8 C 1.38506 * 119.96902 * 359.72491 * 6 5 4 9 9 C 1.39726 * 120.17171 * 95.12935 * 3 2 1 10 10 C 1.48133 * 121.14472 * 359.97438 * 9 3 2 11 11 O 1.21517 * 120.00133 * 306.40498 * 10 9 3 12 12 N 1.34780 * 120.00077 * 126.39834 * 10 9 3 13 13 C 1.46531 * 120.97291 * 354.24407 * 12 10 9 14 14 C 1.51782 * 110.13165 * 233.78963 * 13 12 10 15 15 C 1.49522 * 115.06747 * 318.38099 * 14 13 12 16 16 H 1.08997 * 105.92274 * 157.46575 * 15 14 13 17 17 C 1.52675 * 116.96344 * 40.06478 * 15 14 13 18 18 H 1.09004 * 112.02762 * 83.76491 * 17 15 14 19 19 C 1.56115 * 101.70968 * 203.76441 * 17 15 14 20 20 C 1.55098 * 101.12075 * 37.84122 * 19 17 15 21 21 N 1.46253 * 113.52071 * 272.75869 * 15 14 13 22 22 C 1.36938 * 125.96248 * 315.02211 * 21 15 14 23 23 H 1.08002 * 119.99998 * 359.97438 * 22 21 15 24 24 C 1.38815 * 119.99788 * 180.02562 * 22 21 15 25 25 N 1.31622 * 120.00133 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99935 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47455 * 59.99568 * 26 24 22 28 28 H 1.48499 * 109.47043 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.46723 * 299.99771 * 26 24 22 30 30 C 1.45039 * 120.59350 * 174.84279 * 12 10 9 31 31 H 1.08996 * 109.47538 * 60.00406 * 1 2 3 32 32 H 1.09005 * 109.47022 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47279 * 299.99823 * 1 2 3 34 34 H 1.09005 * 109.47211 * 240.00285 * 2 1 3 35 35 H 1.08998 * 109.47270 * 120.00325 * 2 1 3 36 36 H 1.09000 * 109.47378 * 90.00595 * 7 6 5 37 37 H 1.09007 * 109.47599 * 210.00111 * 7 6 5 38 38 H 1.08996 * 109.47700 * 330.00422 * 7 6 5 39 39 H 1.07993 * 121.09177 * 180.28623 * 8 6 5 40 40 H 1.08997 * 109.36364 * 113.58279 * 13 12 10 41 41 H 1.09009 * 109.36232 * 353.98603 * 13 12 10 42 42 H 1.09001 * 108.36598 * 196.93721 * 14 13 12 43 43 H 1.09003 * 108.22933 * 79.72669 * 14 13 12 44 44 H 1.08999 * 111.09339 * 155.81143 * 19 17 15 45 45 H 1.08994 * 111.10143 * 279.86320 * 19 17 15 46 46 H 1.08994 * 110.35493 * 81.81538 * 20 19 17 47 47 H 1.09003 * 110.35207 * 204.10224 * 20 19 17 48 48 H 0.96994 * 119.99723 * 179.97438 * 25 24 22 49 49 H 1.09001 * 110.02624 * 0.92060 * 30 12 10 50 50 H 1.08998 * 108.14284 * 241.25524 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1576 2.0798 -1.1360 5 7 2.5812 3.2896 -1.1841 6 6 2.9233 3.9647 -0.1035 7 6 3.4136 5.3844 -0.2253 8 6 2.8257 3.3700 1.1435 9 6 2.3681 2.0470 1.2031 10 6 2.2402 1.3381 2.4975 11 8 1.1844 0.8212 2.8054 12 7 3.2948 1.2663 3.3337 13 6 4.6107 1.7712 2.9329 14 6 5.6615 0.6906 3.1117 15 6 5.5362 -0.1135 4.3661 16 1 6.0522 -1.0536 4.1714 17 6 4.1252 -0.5002 4.8025 18 1 3.7724 -1.3986 4.2958 19 6 4.3180 -0.7250 6.3353 20 6 5.3221 0.4059 6.6794 21 7 6.2250 0.4806 5.5113 22 6 7.4871 1.0120 5.5036 23 1 8.0661 1.0152 4.5919 24 6 8.0226 1.5457 6.6678 25 7 7.3171 1.5414 7.7790 26 14 9.7439 2.2713 6.6571 27 1 9.8015 3.3948 5.6878 28 1 10.0790 2.7705 8.0149 29 1 10.7197 1.2245 6.2602 30 6 3.1542 0.6737 4.6500 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.5668 6.0679 -0.1622 37 1 4.1136 5.5977 0.5826 38 1 3.9150 5.5147 -1.1843 39 1 3.0965 3.9073 2.0403 40 1 4.8700 2.6327 3.5482 41 1 4.5782 2.0738 1.8862 42 1 6.6441 1.1622 3.1029 43 1 5.6005 0.0116 2.2611 44 1 3.3788 -0.5926 6.8724 45 1 4.7478 -1.7061 6.5371 46 1 4.7969 1.3515 6.8132 47 1 5.8844 0.1531 7.5784 48 1 7.6915 1.9139 8.5925 49 1 2.1324 0.3224 4.7940 50 1 3.3862 1.4372 5.3925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036752702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:09 Heat of formation + Delta-G solvation = 32.069145 kcal Electronic energy + Delta-G solvation = -31668.926686 eV Core-core repulsion = 27696.500669 eV Total energy + Delta-G solvation = -3972.426017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.66652 -41.37569 -39.76318 -36.92178 -36.14932 -35.03552 -34.41107 -33.44668 -32.70494 -31.09225 -29.44681 -28.91507 -27.39443 -26.41767 -25.87261 -24.64943 -24.13536 -23.02673 -21.93637 -21.30053 -19.86857 -18.93722 -18.73553 -17.99762 -17.49331 -17.15754 -16.91609 -16.45828 -16.22316 -16.02232 -15.69758 -15.54233 -15.15992 -14.90195 -14.68691 -14.56222 -14.30229 -14.13554 -14.05952 -13.90685 -13.33420 -13.27672 -13.23090 -13.06349 -13.01958 -12.82408 -12.73190 -12.50408 -12.25392 -12.10770 -11.99213 -11.93178 -11.72058 -11.61824 -11.54882 -11.44402 -11.28781 -11.14272 -10.67029 -10.65393 -10.58955 -9.73653 -8.79646 -7.74553 -5.14581 -0.70761 -0.28733 1.29945 1.49399 1.50834 1.56928 1.73879 2.31070 2.51980 2.79240 3.00747 3.19359 3.35273 3.37529 3.60113 3.68851 3.72316 3.79302 3.93693 3.98728 4.06879 4.12182 4.19349 4.24482 4.31593 4.37428 4.43510 4.52041 4.59028 4.65103 4.71200 4.74622 4.76186 4.84607 4.88436 4.89370 4.95287 4.95808 5.06567 5.13768 5.14453 5.23720 5.28242 5.31316 5.38488 5.45494 5.54115 5.69208 5.86722 6.18820 6.33506 6.81957 7.15212 7.52748 7.84176 8.49888 9.29643 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003471 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.315875 B = 8065.626524 C = 9442.030656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C 0.101 3.899 4 N -0.256 5.256 5 N -0.254 5.254 6 C 0.066 3.934 7 C -0.100 4.100 8 C -0.077 4.077 9 C -0.125 4.125 10 C 0.569 3.431 11 O -0.544 6.544 12 N -0.585 5.585 13 C 0.122 3.878 14 C -0.132 4.132 15 C 0.168 3.832 16 H -0.002 1.002 17 C -0.095 4.095 18 H 0.099 0.901 19 C -0.129 4.129 20 C 0.161 3.839 21 N -0.610 5.610 22 C -0.226 4.226 23 H 0.082 0.918 24 C -0.062 4.062 25 N -0.948 5.948 26 Si 0.970 3.030 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.282 1.282 30 C 0.127 3.873 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.178 0.822 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.064 0.936 46 H -0.005 1.005 47 H 0.060 0.940 48 H 0.244 0.756 49 H 0.097 0.903 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 2.401 -13.602 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 C -0.044 4.044 4 N -0.097 5.097 5 N -0.096 5.096 6 C -0.078 4.078 7 C -0.158 4.158 8 C -0.106 4.106 9 C -0.139 4.139 10 C 0.356 3.644 11 O -0.422 6.422 12 N -0.315 5.315 13 C 0.000 4.000 14 C -0.172 4.172 15 C 0.061 3.939 16 H 0.015 0.985 17 C -0.115 4.115 18 H 0.117 0.883 19 C -0.168 4.168 20 C 0.036 3.964 21 N -0.335 5.335 22 C -0.355 4.355 23 H 0.100 0.900 24 C -0.255 4.255 25 N -0.597 5.597 26 Si 0.799 3.201 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.208 1.208 30 C 0.004 3.996 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.195 0.805 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.013 0.987 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.115 0.885 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.966 2.217 -14.962 18.682 hybrid contribution 1.399 0.397 2.051 2.514 sum -9.567 2.614 -12.911 16.280 Atomic orbital electron populations 1.21620 0.92619 1.03358 1.01689 1.20516 0.97955 0.88171 1.04162 1.23152 0.93343 0.99287 0.88612 1.72953 1.10454 1.01981 1.24263 1.72767 1.07321 1.01132 1.28372 1.23373 0.95176 1.00153 0.89134 1.20866 1.02866 0.86525 1.05557 1.22832 0.93700 0.93216 1.00889 1.21043 1.01359 0.96640 0.94843 1.18038 0.83751 0.79623 0.83020 1.90776 1.28438 1.47339 1.75693 1.47483 1.09573 1.58684 1.15784 1.21377 0.80840 0.96912 1.00859 1.21152 0.99573 0.98417 0.98052 1.19642 0.92083 0.94138 0.88033 0.98454 1.22272 0.93867 0.98066 0.97279 0.88310 1.23150 0.99760 0.99350 0.94525 1.21682 0.89708 0.93202 0.91799 1.44713 1.12864 1.70404 1.05521 1.19256 0.90215 1.30405 0.95627 0.89978 1.25473 1.01735 1.02575 0.95721 1.70071 1.37513 1.51959 1.00193 0.85280 0.80271 0.78382 0.76167 1.20217 1.22556 1.20846 1.21312 1.00522 0.95209 0.82561 0.92455 0.90028 0.93221 0.88264 0.90410 0.88171 0.87905 0.89325 0.80493 0.91239 0.88967 0.91028 0.91359 0.89510 0.91707 0.98715 0.92137 0.94593 0.88475 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.82 71.98 0.71 -2.08 16 2 C -0.07 -1.52 5.62 29.85 0.17 -1.35 16 3 C 0.10 2.54 6.16 42.91 0.26 2.80 16 4 N -0.26 -6.88 11.42 -46.94 -0.54 -7.41 16 5 N -0.25 -6.38 11.41 -47.70 -0.54 -6.93 16 6 C 0.07 1.29 6.86 42.61 0.29 1.58 16 7 C -0.10 -1.15 10.19 71.23 0.73 -0.42 16 8 C -0.08 -1.51 7.69 22.79 0.18 -1.34 16 9 C -0.12 -3.02 4.64 -19.83 -0.09 -3.11 16 10 C 0.57 15.45 6.20 86.87 0.54 15.99 16 11 O -0.54 -17.10 14.42 -3.77 -0.05 -17.16 16 12 N -0.59 -15.95 2.93 -830.56 -2.43 -18.38 16 13 C 0.12 3.24 5.74 85.97 0.49 3.74 16 14 C -0.13 -4.11 5.59 29.08 0.16 -3.95 16 15 C 0.17 6.18 2.66 43.82 0.12 6.30 16 16 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 17 C -0.10 -2.97 3.72 -9.78 -0.04 -3.01 16 18 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 19 C -0.13 -4.40 6.46 32.39 0.21 -4.19 16 20 C 0.16 7.31 5.35 86.84 0.46 7.77 16 21 N -0.61 -28.31 3.30 -677.99 -2.24 -30.55 16 22 C -0.23 -11.58 9.57 84.03 0.80 -10.78 16 23 H 0.08 4.01 7.01 -2.91 -0.02 3.99 16 24 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 25 N -0.95 -53.77 10.18 21.65 0.22 -53.55 16 26 Si 0.97 43.37 29.55 68.60 2.03 45.39 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 30 C 0.13 3.74 5.42 86.69 0.47 4.21 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.21 7.17 -2.39 -0.02 1.19 16 34 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.08 1.81 6.65 -2.39 -0.02 1.79 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.80 8.09 -2.38 -0.02 0.79 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.18 2.68 7.85 -2.91 -0.02 2.65 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 2.05 5.37 -2.38 -0.01 2.04 16 42 H 0.07 2.45 6.60 -2.39 -0.02 2.44 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.09 2.54 7.98 -2.39 -0.02 2.52 16 45 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 46 H -0.01 -0.25 7.10 -2.39 -0.02 -0.26 16 47 H 0.06 3.23 6.09 -2.39 -0.01 3.21 16 48 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 49 H 0.10 2.76 6.97 -2.39 -0.02 2.75 16 50 H 0.06 2.10 6.49 -2.39 -0.02 2.09 16 Total: -1.00 -65.38 384.76 3.32 -62.06 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.95 Total: 17.21 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.93 Total: 9.32 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.53 Total: -116.83 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.05 Total: -17.16 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.38 3.32 -62.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036752702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.128 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds