Wall clock time and date at job start Wed Apr 1 2020 03:07:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.31811 * 119.12072 * 2 1
4 4 C 1.32317 * 120.81501 * 180.02562 * 3 2 1
5 5 C 1.38622 * 119.10581 * 0.02562 * 4 3 2
6 6 C 1.38579 * 118.40007 * 359.97438 * 5 4 3
7 7 C 1.50696 * 120.44880 * 179.97438 * 6 5 4
8 8 C 1.53006 * 109.46772 * 125.00347 * 7 6 5
9 9 C 1.50706 * 109.46857 * 179.97438 * 8 7 6
10 10 O 1.21277 * 119.99981 * 0.02562 * 9 8 7
11 11 N 1.34778 * 119.99442 * 179.97438 * 9 8 7
12 12 C 1.46587 * 119.68658 * 0.02562 * 11 9 8
13 13 C 1.53959 * 110.58378 * 132.18279 * 12 11 9
14 14 C 1.51519 * 107.34207 * 51.04736 * 13 12 11
15 15 H 1.08998 * 108.81984 * 53.44788 * 14 13 12
16 16 C 1.55359 * 107.78400 * 295.14084 * 14 13 12
17 17 H 1.09002 * 111.50467 * 308.84396 * 16 14 13
18 18 C 1.53736 * 100.22641 * 190.94313 * 16 14 13
19 19 C 1.55298 * 101.84371 * 39.09038 * 18 16 14
20 20 N 1.45474 * 117.33733 * 178.10745 * 14 13 12
21 21 C 1.36938 * 126.40569 * 329.39828 * 20 14 13
22 22 H 1.08000 * 119.99794 * 7.51456 * 21 20 14
23 23 C 1.38816 * 120.00197 * 187.52063 * 21 20 14
24 24 N 1.31616 * 119.99488 * 8.09914 * 23 21 20
25 25 Si 1.86793 * 119.99888 * 188.10382 * 23 21 20
26 26 H 1.48502 * 109.47571 * 94.80191 * 25 23 21
27 27 H 1.48502 * 109.46883 * 214.79754 * 25 23 21
28 28 H 1.48500 * 109.47200 * 334.79372 * 25 23 21
29 29 C 1.48102 * 119.01452 * 179.46111 * 11 9 8
30 30 N 1.31789 * 119.12620 * 180.30213 * 2 1 3
31 31 H 1.08996 * 109.47343 * 89.99848 * 1 2 3
32 32 H 1.09004 * 109.46924 * 209.99732 * 1 2 3
33 33 H 1.08997 * 109.47376 * 329.99307 * 1 2 3
34 34 H 1.08001 * 120.44888 * 180.02562 * 4 3 2
35 35 H 1.07998 * 120.80051 * 179.97438 * 5 4 3
36 36 H 1.08997 * 109.46989 * 5.00831 * 7 6 5
37 37 H 1.08997 * 109.47468 * 245.00714 * 7 6 5
38 38 H 1.08997 * 109.46968 * 60.00471 * 8 7 6
39 39 H 1.08994 * 109.47043 * 300.00040 * 8 7 6
40 40 H 1.08999 * 109.25826 * 11.89665 * 12 11 9
41 41 H 1.09003 * 109.25305 * 252.46334 * 12 11 9
42 42 H 1.08998 * 109.88243 * 291.58865 * 13 12 11
43 43 H 1.09005 * 109.88092 * 170.50588 * 13 12 11
44 44 H 1.09001 * 110.95638 * 157.22734 * 18 16 14
45 45 H 1.08996 * 110.96044 * 280.95349 * 18 16 14
46 46 H 1.09001 * 109.91898 * 96.86779 * 19 18 16
47 47 H 1.08990 * 109.92100 * 218.17282 * 19 18 16
48 48 H 0.97009 * 119.99621 * 180.02562 * 24 23 21
49 49 H 1.09000 * 108.77496 * 112.84056 * 29 11 9
50 50 H 1.08997 * 111.54501 * 351.17141 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1484 1.1515 0.0000
4 6 3.4710 1.1906 -0.0005
5 6 4.1808 -0.0001 -0.0016
6 6 3.4713 -1.1904 -0.0015
7 6 4.1961 -2.5116 -0.0033
8 6 3.7173 -3.3575 1.1784
9 6 4.4417 -4.6790 1.1763
10 8 5.2607 -4.9202 0.3149
11 7 4.1802 -5.5922 2.1324
12 6 3.1895 -5.2931 3.1705
13 6 2.2124 -6.4706 3.3417
14 6 3.0436 -7.7250 3.5187
15 1 3.7526 -7.5654 4.3310
16 6 3.8255 -7.9664 2.1981
17 1 3.1641 -7.9426 1.3320
18 6 4.3611 -9.3847 2.4533
19 6 3.1541 -10.0586 3.1610
20 7 2.3303 -8.9730 3.7423
21 6 1.1226 -9.1174 4.3715
22 1 0.5509 -8.2443 4.6495
23 6 0.6333 -10.3858 4.6520
24 7 1.3949 -11.4420 4.4604
25 14 -1.1058 -10.5935 5.3012
26 1 -2.0269 -10.8704 4.1697
27 1 -1.1443 -11.7272 6.2596
28 1 -1.5289 -9.3480 5.9905
29 6 4.8959 -6.8885 2.1026
30 7 2.1484 -1.1512 -0.0061
31 1 -0.3634 0.0000 -1.0276
32 1 -0.3633 -0.8900 0.5138
33 1 -0.3634 0.8899 0.5139
34 1 3.9906 2.1375 -0.0001
35 1 5.2608 -0.0001 -0.0024
36 1 5.2685 -2.3377 0.0853
37 1 3.9892 -3.0384 -0.9348
38 1 2.6449 -3.5313 1.0898
39 1 3.9243 -2.8307 2.1098
40 1 2.6309 -4.4008 2.8880
41 1 3.7023 -5.1114 4.1151
42 1 1.5851 -6.5636 2.4552
43 1 1.5901 -6.3109 4.2223
44 1 4.5936 -9.8883 1.5150
45 1 5.2326 -9.3605 3.1074
46 1 2.5669 -10.6232 2.4367
47 1 3.5089 -10.7195 3.9516
48 1 1.0528 -12.3285 4.6561
49 1 5.5593 -6.9429 2.9658
50 1 5.4673 -7.0092 1.1823
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036778699.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:07:30
Heat of formation + Delta-G solvation = 34.893447 kcal
Electronic energy + Delta-G solvation = -30008.003930 eV
Core-core repulsion = 26035.700384 eV
Total energy + Delta-G solvation = -3972.303546 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.43158 -40.25224 -38.35818 -35.50301 -35.28963 -33.73262 -32.81330 -31.80339
-31.55669 -29.66369 -28.85270 -28.19185 -26.14002 -24.85162 -23.72314 -23.05735
-22.41722 -21.91413 -20.11313 -19.74713 -18.79597 -17.90396 -17.38064 -16.51456
-16.08663 -15.99730 -15.64977 -15.48296 -15.41984 -15.02481 -14.41749 -14.19055
-13.92299 -13.86337 -13.52568 -13.31270 -13.09660 -12.87597 -12.81320 -12.67737
-12.53603 -12.44965 -12.17200 -11.73134 -11.59443 -11.45974 -11.33965 -11.16216
-10.87360 -10.82244 -10.79410 -10.71622 -10.18174 -10.11113 -9.95277 -9.75615
-9.64756 -9.61177 -9.51627 -9.46862 -8.64782 -8.51053 -6.83711 -5.73977
-3.07793 0.56206 0.73192 2.66680 3.02425 3.38375 3.39595 3.43523
3.45718 3.56415 3.75256 4.07399 4.46550 4.48730 4.68653 4.72812
4.78614 4.88497 5.00274 5.04333 5.06304 5.15918 5.23378 5.24105
5.30357 5.35958 5.49925 5.52529 5.57202 5.59126 5.59969 5.72254
5.78810 5.79139 5.88211 6.01291 6.10859 6.13427 6.16608 6.21819
6.34943 6.48100 6.58289 6.61936 6.70616 6.81295 7.04969 7.46108
7.48602 7.63710 7.77507 7.79286 8.20882 8.22502 9.16456 9.81080
10.49709 11.38516
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014188 B = 0.002382 C = 0.002092
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1973.026632 B =11749.848757 C =13382.418333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 C 0.320 3.680
3 N -0.527 5.527
4 C 0.152 3.848
5 C -0.234 4.234
6 C 0.185 3.815
7 C -0.056 4.056
8 C -0.132 4.132
9 C 0.512 3.488
10 O -0.551 6.551
11 N -0.607 5.607
12 C 0.112 3.888
13 C -0.131 4.131
14 C 0.168 3.832
15 H 0.019 0.981
16 C -0.125 4.125
17 H 0.078 0.922
18 C -0.135 4.135
19 C 0.174 3.826
20 N -0.593 5.593
21 C -0.227 4.227
22 H 0.078 0.922
23 C -0.007 4.007
24 N -0.918 5.918
25 Si 0.909 3.091
26 H -0.290 1.290
27 H -0.291 1.291
28 H -0.281 1.281
29 C 0.128 3.872
30 N -0.515 5.515
31 H 0.086 0.914
32 H 0.088 0.912
33 H 0.085 0.915
34 H 0.168 0.832
35 H 0.148 0.852
36 H 0.092 0.908
37 H 0.098 0.902
38 H 0.106 0.894
39 H 0.090 0.910
40 H 0.080 0.920
41 H 0.066 0.934
42 H 0.067 0.933
43 H 0.077 0.923
44 H 0.060 0.940
45 H 0.059 0.941
46 H 0.035 0.965
47 H 0.055 0.945
48 H 0.252 0.748
49 H 0.066 0.934
50 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.818 22.564 -7.540 24.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.053 3.947
3 N -0.242 5.242
4 C -0.014 4.014
5 C -0.255 4.255
6 C 0.039 3.961
7 C -0.094 4.094
8 C -0.172 4.172
9 C 0.300 3.700
10 O -0.430 6.430
11 N -0.339 5.339
12 C -0.011 4.011
13 C -0.170 4.170
14 C 0.060 3.940
15 H 0.036 0.964
16 C -0.145 4.145
17 H 0.097 0.903
18 C -0.174 4.174
19 C 0.050 3.950
20 N -0.317 5.317
21 C -0.356 4.356
22 H 0.096 0.904
23 C -0.204 4.204
24 N -0.565 5.565
25 Si 0.739 3.261
26 H -0.217 1.217
27 H -0.218 1.218
28 H -0.206 1.206
29 C 0.006 3.994
30 N -0.230 5.230
31 H 0.104 0.896
32 H 0.107 0.893
33 H 0.104 0.896
34 H 0.185 0.815
35 H 0.166 0.834
36 H 0.111 0.889
37 H 0.116 0.884
38 H 0.124 0.876
39 H 0.109 0.891
40 H 0.099 0.901
41 H 0.084 0.916
42 H 0.086 0.914
43 H 0.095 0.905
44 H 0.079 0.921
45 H 0.078 0.922
46 H 0.054 0.946
47 H 0.073 0.927
48 H 0.062 0.938
49 H 0.084 0.916
50 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 5.101 22.234 -7.861 24.128
hybrid contribution -0.035 -0.176 0.440 0.475
sum 5.066 22.058 -7.420 23.818
Atomic orbital electron populations
1.20591 0.85610 1.04350 1.03970 1.23314 0.98259 0.83286 0.89804
1.68273 1.10200 1.30563 1.15193 1.23233 0.89707 0.98635 0.89784
1.22791 1.03043 0.94137 1.05573 1.21782 0.89605 0.95911 0.88820
1.20371 0.99203 0.89686 1.00135 1.21595 1.02514 0.93520 0.99608
1.20574 0.82648 0.85843 0.80910 1.90669 1.35484 1.79588 1.37257
1.48453 1.41023 1.16482 1.27992 1.21809 0.90045 0.98700 0.90567
1.21899 0.97765 0.94614 1.02709 1.20585 0.92616 0.87646 0.93199
0.96353 1.22614 0.97508 0.94376 0.99996 0.90350 1.22696 0.99562
0.94997 1.00132 1.21527 0.88097 0.89766 0.95597 1.44176 1.21000
1.00337 1.66235 1.18984 0.93317 0.92427 1.30829 0.90433 1.24805
0.98517 0.95653 1.01435 1.69953 1.34798 0.97637 1.54112 0.86150
0.84386 0.77336 0.78196 1.21695 1.21798 1.20609 1.21665 0.94173
0.80840 1.02713 1.68111 1.09559 1.30539 1.14821 0.89586 0.89348
0.89623 0.81483 0.83411 0.88934 0.88399 0.87608 0.89147 0.90140
0.91621 0.91379 0.90455 0.92104 0.92182 0.94623 0.92692 0.93761
0.91604 0.88954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.63 10.32 36.00 0.37 -0.26 16
2 C 0.32 3.26 7.64 -157.19 -1.20 2.06 16
3 N -0.53 -5.25 10.33 -10.72 -0.11 -5.36 16
4 C 0.15 1.17 11.31 -17.20 -0.19 0.97 16
5 C -0.23 -1.77 9.80 -39.31 -0.39 -2.15 16
6 C 0.19 1.77 6.20 -82.25 -0.51 1.26 16
7 C -0.06 -0.53 4.94 -27.88 -0.14 -0.66 16
8 C -0.13 -1.34 3.90 -27.88 -0.11 -1.45 16
9 C 0.51 6.90 7.66 -10.98 -0.08 6.81 16
10 O -0.55 -8.99 15.33 5.56 0.09 -8.91 16
11 N -0.61 -8.37 3.02 -172.20 -0.52 -8.89 16
12 C 0.11 1.40 6.22 -3.49 -0.02 1.38 16
13 C -0.13 -2.13 5.45 -26.98 -0.15 -2.28 16
14 C 0.17 3.28 2.58 -67.98 -0.18 3.10 16
15 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16
16 C -0.12 -2.17 2.81 -89.39 -0.25 -2.43 16
17 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16
18 C -0.13 -2.47 6.53 -25.13 -0.16 -2.64 16
19 C 0.17 4.15 5.46 -1.91 -0.01 4.14 16
20 N -0.59 -14.59 3.35 -163.09 -0.55 -15.14 16
21 C -0.23 -6.11 9.88 -15.06 -0.15 -6.26 16
22 H 0.08 2.00 7.18 -52.49 -0.38 1.62 16
23 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16
24 N -0.92 -26.72 10.66 55.49 0.59 -26.12 16
25 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16
26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
29 C 0.13 1.91 5.96 -3.57 -0.02 1.89 16
30 N -0.52 -5.60 9.95 -6.99 -0.07 -5.67 16
31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16
33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
34 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16
35 H 0.15 0.72 8.01 -52.49 -0.42 0.30 16
36 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16
37 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16
38 H 0.11 1.10 7.39 -51.93 -0.38 0.71 16
39 H 0.09 0.78 7.99 -51.93 -0.41 0.37 16
40 H 0.08 0.82 5.84 -51.93 -0.30 0.52 16
41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
42 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16
43 H 0.08 1.28 7.64 -51.93 -0.40 0.88 16
44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
45 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16
46 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16
47 H 0.05 1.45 7.25 -51.93 -0.38 1.08 16
48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
49 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16
50 H 0.09 1.41 7.06 -51.93 -0.37 1.05 16
LS Contribution 395.33 15.07 5.96 5.96
Total: -1.00 -33.17 395.33 -10.97 -44.14
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: -8.05 Total: 0.03 kcal
Atomic # 6 Polarization: 6.48 SS G_CDS: -3.28 Total: 3.20 kcal
Atomic # 7 Polarization: -60.53 SS G_CDS: -0.65 Total: -61.18 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.91 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -33.17 -10.97 -44.14 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036778699.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.034 kcal
(2) G-P(sol) polarization free energy of solvation -33.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.863 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.893 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds