Wall clock time and date at job start Wed Apr 1 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31808 * 119.12230 * 2 1 4 4 C 1.32322 * 120.82024 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.09679 * 359.97438 * 4 3 2 6 6 C 1.38576 * 118.40316 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.44771 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47035 * 124.99676 * 7 6 5 9 9 C 1.50708 * 109.47046 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99749 * 180.02562 * 9 8 7 12 12 C 1.46524 * 120.97993 * 359.97438 * 11 9 8 13 13 C 1.51785 * 110.13269 * 233.79305 * 12 11 9 14 14 C 1.49511 * 115.07601 * 318.39646 * 13 12 11 15 15 H 1.08997 * 105.92662 * 156.45170 * 14 13 12 16 16 C 1.52670 * 116.96617 * 40.04123 * 14 13 12 17 17 H 1.09001 * 112.03463 * 82.26468 * 16 14 13 18 18 C 1.56121 * 101.71684 * 202.84690 * 16 14 13 19 19 C 1.55102 * 101.08054 * 37.85050 * 18 16 14 20 20 N 1.46256 * 114.17803 * 272.08985 * 14 13 12 21 21 C 1.36941 * 125.96242 * 315.60112 * 20 14 13 22 22 H 1.08002 * 119.99842 * 0.02562 * 21 20 14 23 23 C 1.38811 * 120.00262 * 179.97438 * 21 20 14 24 24 N 1.31621 * 119.99593 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47116 * 60.00118 * 25 23 21 27 27 H 1.48501 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47504 * 299.99937 * 25 23 21 29 29 C 1.46696 * 120.97284 * 179.97438 * 11 9 8 30 30 N 1.31777 * 119.12344 * 180.29012 * 2 1 3 31 31 H 1.08999 * 109.47026 * 90.00024 * 1 2 3 32 32 H 1.09002 * 109.47419 * 210.00614 * 1 2 3 33 33 H 1.09002 * 109.47294 * 330.00530 * 1 2 3 34 34 H 1.07994 * 120.45108 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.79284 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47049 * 4.99790 * 7 6 5 37 37 H 1.08996 * 109.46953 * 245.00048 * 7 6 5 38 38 H 1.08998 * 109.47109 * 60.00151 * 8 7 6 39 39 H 1.08996 * 109.47553 * 300.00003 * 8 7 6 40 40 H 1.08999 * 109.36121 * 353.99745 * 12 11 9 41 41 H 1.09000 * 109.36438 * 113.59246 * 12 11 9 42 42 H 1.09004 * 108.36481 * 79.84742 * 13 12 11 43 43 H 1.09007 * 108.36318 * 196.94648 * 13 12 11 44 44 H 1.08993 * 111.09958 * 279.89707 * 18 16 14 45 45 H 1.09008 * 111.13158 * 155.81625 * 18 16 14 46 46 H 1.08996 * 110.34558 * 204.07896 * 19 18 16 47 47 H 1.08999 * 110.44174 * 81.84843 * 19 18 16 48 48 H 0.97003 * 119.99747 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.53069 * 241.04914 * 29 11 9 50 50 H 1.09001 * 109.53128 * 1.25811 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 3.4712 -1.1904 -0.0005 7 6 4.1961 -2.5116 0.0001 8 6 3.7156 -3.3564 1.1817 9 6 4.4409 -4.6774 1.1827 10 8 5.2610 -4.9196 0.3226 11 7 4.1775 -5.5901 2.1387 12 6 3.1905 -5.3203 3.1876 13 6 3.8125 -5.5289 4.5563 14 6 4.6974 -6.7283 4.6741 15 1 5.3724 -6.5215 5.5045 16 6 5.6131 -7.0319 3.4908 17 1 6.5255 -6.4361 3.5164 18 6 5.8844 -8.5572 3.6831 19 6 4.4977 -9.0469 4.1758 20 7 3.9945 -7.9579 5.0387 21 6 3.0370 -8.0790 6.0102 22 1 2.7400 -7.2151 6.5864 23 6 2.4473 -9.3118 6.2538 24 7 2.8081 -10.3642 5.5506 25 14 1.1417 -9.4770 7.5795 26 1 -0.0041 -8.5882 7.2593 27 1 0.6735 -10.8849 7.6404 28 1 1.7173 -9.0891 8.8922 29 6 4.8704 -6.8829 2.1598 30 7 2.1484 -1.1512 -0.0058 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 3.9906 2.1374 -0.0001 35 1 5.2609 -0.0001 -0.0013 36 1 5.2683 -2.3377 0.0900 37 1 3.9904 -3.0393 -0.9312 38 1 2.6433 -3.5303 1.0918 39 1 3.9212 -2.8288 2.1130 40 1 2.8439 -4.2905 3.1013 41 1 2.3432 -5.9957 3.0690 42 1 4.3982 -4.6442 4.8059 43 1 3.0096 -5.6215 5.2878 44 1 6.6516 -8.7271 4.4384 45 1 6.1549 -9.0304 2.7390 46 1 4.6028 -9.9675 4.7498 47 1 3.8265 -9.2022 3.3311 48 1 2.3958 -11.2257 5.7206 49 1 4.1429 -7.6881 2.0561 50 1 5.5841 -6.9273 1.3371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:34 Heat of formation + Delta-G solvation = 36.938425 kcal Electronic energy + Delta-G solvation = -30289.129897 eV Core-core repulsion = 26316.915028 eV Total energy + Delta-G solvation = -3972.214869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.40091 -40.18225 -38.35423 -35.40631 -35.15000 -33.70765 -32.89050 -31.82118 -31.69271 -29.40515 -28.82878 -27.84880 -26.35882 -24.96332 -23.96247 -23.22250 -22.60604 -21.93165 -20.15038 -19.51467 -18.14033 -17.87746 -17.24784 -16.47114 -16.21688 -15.91529 -15.64978 -15.45852 -15.36176 -15.12032 -14.41659 -14.15012 -13.96798 -13.81560 -13.57189 -13.10806 -13.03210 -12.95670 -12.65255 -12.63425 -12.58957 -12.19937 -12.07710 -11.73378 -11.48784 -11.38390 -11.21179 -11.12829 -11.02103 -10.77590 -10.76433 -10.55279 -10.20655 -10.11884 -9.95191 -9.72027 -9.67761 -9.60947 -9.52897 -9.46879 -8.65616 -8.26147 -6.83971 -5.70451 -3.09548 0.59176 0.76014 2.76592 3.17437 3.37021 3.41724 3.43057 3.43365 3.59419 3.78188 4.12771 4.44689 4.54623 4.72867 4.79089 4.86048 4.93651 5.06889 5.10248 5.17023 5.24110 5.24594 5.26751 5.39526 5.44500 5.51824 5.54149 5.54815 5.60859 5.71547 5.76261 5.83712 5.85176 5.93223 6.10066 6.13713 6.21574 6.29689 6.31600 6.41306 6.57807 6.66187 6.72501 6.73551 6.91662 6.96731 7.48131 7.59271 7.67595 7.81846 7.82618 8.30760 8.32181 9.17600 9.80068 10.46765 11.35507 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002469 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.931615 B =11336.130313 C =12671.004841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.320 3.680 3 N -0.527 5.527 4 C 0.152 3.848 5 C -0.233 4.233 6 C 0.186 3.814 7 C -0.055 4.055 8 C -0.130 4.130 9 C 0.515 3.485 10 O -0.554 6.554 11 N -0.601 5.601 12 C 0.116 3.884 13 C -0.136 4.136 14 C 0.172 3.828 15 H 0.008 0.992 16 C -0.106 4.106 17 H 0.075 0.925 18 C -0.142 4.142 19 C 0.156 3.844 20 N -0.593 5.593 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.912 3.088 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.120 3.880 30 N -0.515 5.515 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.015 0.985 48 H 0.253 0.747 49 H 0.077 0.923 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 19.251 -10.588 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.255 4.255 6 C 0.039 3.961 7 C -0.094 4.094 8 C -0.170 4.170 9 C 0.304 3.696 10 O -0.434 6.434 11 N -0.333 5.333 12 C -0.007 4.007 13 C -0.175 4.175 14 C 0.064 3.936 15 H 0.025 0.975 16 C -0.126 4.126 17 H 0.094 0.906 18 C -0.181 4.181 19 C 0.032 3.968 20 N -0.318 5.318 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.002 4.002 30 N -0.231 5.231 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.032 0.968 48 H 0.063 0.937 49 H 0.095 0.905 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.974 18.936 -10.925 21.883 hybrid contribution 0.219 0.014 0.851 0.879 sum 1.193 18.949 -10.074 21.494 Atomic orbital electron populations 1.20585 0.85651 1.04324 1.03911 1.23300 0.98241 0.83312 0.89891 1.68266 1.10208 1.30560 1.15218 1.23233 0.89697 0.98636 0.89790 1.22798 1.03074 0.94132 1.05493 1.21790 0.89584 0.95939 0.88745 1.20368 0.99233 0.89656 1.00103 1.21553 1.02396 0.93552 0.99549 1.20467 0.82607 0.85502 0.81064 1.90659 1.35522 1.79450 1.37736 1.47988 1.40983 1.16876 1.27414 1.21328 0.91169 1.00903 0.87294 1.21236 1.01212 0.98655 0.96445 1.19415 0.92084 0.87849 0.94223 0.97469 1.22324 0.97688 0.98082 0.94514 0.90645 1.23283 1.00989 0.93685 1.00179 1.21914 0.87849 0.93859 0.93200 1.44474 1.45492 1.02286 1.39518 1.18915 1.12321 0.94597 1.09226 0.90549 1.24761 1.00182 0.95792 0.99705 1.69836 1.45040 0.99658 1.42289 0.86202 0.81395 0.76800 0.81376 1.21241 1.21620 1.21215 1.21695 0.96649 0.84016 0.97866 1.68101 1.09584 1.30531 1.14851 0.89628 0.89393 0.89633 0.81476 0.83389 0.88918 0.88431 0.87788 0.89118 0.90718 0.90964 0.93254 0.89911 0.91948 0.92032 0.88392 0.96755 0.93675 0.90480 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.32 36.01 0.37 -0.27 16 2 C 0.32 3.34 7.64 -157.20 -1.20 2.14 16 3 N -0.53 -5.42 10.33 -10.72 -0.11 -5.54 16 4 C 0.15 1.23 11.31 -17.20 -0.19 1.04 16 5 C -0.23 -1.88 9.80 -39.31 -0.39 -2.27 16 6 C 0.19 1.87 6.20 -82.25 -0.51 1.36 16 7 C -0.06 -0.56 4.94 -27.89 -0.14 -0.70 16 8 C -0.13 -1.44 3.93 -27.88 -0.11 -1.55 16 9 C 0.52 7.54 7.71 -10.98 -0.08 7.46 16 10 O -0.55 -9.59 15.41 5.56 0.09 -9.51 16 11 N -0.60 -9.31 2.94 -174.15 -0.51 -9.82 16 12 C 0.12 1.72 6.39 -4.64 -0.03 1.69 16 13 C -0.14 -2.27 5.62 -29.07 -0.16 -2.43 16 14 C 0.17 3.39 2.63 -69.95 -0.18 3.20 16 15 H 0.01 0.16 8.06 -51.93 -0.42 -0.26 16 16 C -0.11 -1.85 3.68 -89.04 -0.33 -2.18 16 17 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.14 -2.63 6.46 -23.95 -0.15 -2.78 16 19 C 0.16 3.63 5.35 -2.23 -0.01 3.62 16 20 N -0.59 -14.19 3.32 -165.70 -0.55 -14.74 16 21 C -0.22 -5.83 9.59 -15.06 -0.14 -5.97 16 22 H 0.08 1.92 7.02 -52.49 -0.37 1.55 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 24 N -0.92 -26.04 10.18 55.49 0.56 -25.48 16 25 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 29 C 0.12 2.02 5.55 -3.86 -0.02 2.00 16 30 N -0.52 -5.78 9.94 -6.99 -0.07 -5.85 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.15 0.81 8.01 -52.49 -0.42 0.39 16 36 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 37 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.10 1.15 7.79 -51.93 -0.40 0.74 16 39 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 40 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.50 6.64 -51.93 -0.34 1.16 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.01 7.98 -51.92 -0.41 0.60 16 46 H 0.10 2.59 6.09 -51.93 -0.32 2.28 16 47 H 0.01 0.36 7.11 -51.93 -0.37 -0.01 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.08 1.43 6.49 -51.93 -0.34 1.09 16 50 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -31.84 390.81 -10.92 -42.77 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.81 Total: 1.85 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.38 Total: 4.02 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.68 Total: -61.42 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.84 -10.92 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.704 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds