Wall clock time and date at job start Wed Apr 1 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31808 * 119.12230 * 2 1 4 4 C 1.32322 * 120.82024 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.09679 * 359.97438 * 4 3 2 6 6 C 1.38576 * 118.40316 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.44771 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47035 * 124.99676 * 7 6 5 9 9 C 1.50708 * 109.47046 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00015 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99749 * 180.02562 * 9 8 7 12 12 C 1.46524 * 120.97993 * 359.97438 * 11 9 8 13 13 C 1.51785 * 110.13269 * 233.79305 * 12 11 9 14 14 C 1.49511 * 115.07601 * 318.39646 * 13 12 11 15 15 H 1.08997 * 105.92662 * 156.45170 * 14 13 12 16 16 C 1.52670 * 116.96617 * 40.04123 * 14 13 12 17 17 H 1.09001 * 112.03463 * 82.26468 * 16 14 13 18 18 C 1.56121 * 101.71684 * 202.84690 * 16 14 13 19 19 C 1.55102 * 101.08054 * 37.85050 * 18 16 14 20 20 N 1.46256 * 114.17803 * 272.08985 * 14 13 12 21 21 C 1.36941 * 125.96242 * 315.60112 * 20 14 13 22 22 H 1.08002 * 119.99842 * 0.02562 * 21 20 14 23 23 C 1.38811 * 120.00262 * 179.97438 * 21 20 14 24 24 N 1.31621 * 119.99593 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99988 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47116 * 60.00118 * 25 23 21 27 27 H 1.48501 * 109.47002 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47504 * 299.99937 * 25 23 21 29 29 C 1.46696 * 120.97284 * 179.97438 * 11 9 8 30 30 N 1.31777 * 119.12344 * 180.29012 * 2 1 3 31 31 H 1.08999 * 109.47026 * 90.00024 * 1 2 3 32 32 H 1.09002 * 109.47419 * 210.00614 * 1 2 3 33 33 H 1.09002 * 109.47294 * 330.00530 * 1 2 3 34 34 H 1.07994 * 120.45108 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.79284 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47049 * 4.99790 * 7 6 5 37 37 H 1.08996 * 109.46953 * 245.00048 * 7 6 5 38 38 H 1.08998 * 109.47109 * 60.00151 * 8 7 6 39 39 H 1.08996 * 109.47553 * 300.00003 * 8 7 6 40 40 H 1.08999 * 109.36121 * 353.99745 * 12 11 9 41 41 H 1.09000 * 109.36438 * 113.59246 * 12 11 9 42 42 H 1.09004 * 108.36481 * 79.84742 * 13 12 11 43 43 H 1.09007 * 108.36318 * 196.94648 * 13 12 11 44 44 H 1.08993 * 111.09958 * 279.89707 * 18 16 14 45 45 H 1.09008 * 111.13158 * 155.81625 * 18 16 14 46 46 H 1.08996 * 110.34558 * 204.07896 * 19 18 16 47 47 H 1.08999 * 110.44174 * 81.84843 * 19 18 16 48 48 H 0.97003 * 119.99747 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.53069 * 241.04914 * 29 11 9 50 50 H 1.09001 * 109.53128 * 1.25811 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1808 -0.0002 -0.0005 6 6 3.4712 -1.1904 -0.0005 7 6 4.1961 -2.5116 0.0001 8 6 3.7156 -3.3564 1.1817 9 6 4.4409 -4.6774 1.1827 10 8 5.2610 -4.9196 0.3226 11 7 4.1775 -5.5901 2.1387 12 6 3.1905 -5.3203 3.1876 13 6 3.8125 -5.5289 4.5563 14 6 4.6974 -6.7283 4.6741 15 1 5.3724 -6.5215 5.5045 16 6 5.6131 -7.0319 3.4908 17 1 6.5255 -6.4361 3.5164 18 6 5.8844 -8.5572 3.6831 19 6 4.4977 -9.0469 4.1758 20 7 3.9945 -7.9579 5.0387 21 6 3.0370 -8.0790 6.0102 22 1 2.7400 -7.2151 6.5864 23 6 2.4473 -9.3118 6.2538 24 7 2.8081 -10.3642 5.5506 25 14 1.1417 -9.4770 7.5795 26 1 -0.0041 -8.5882 7.2593 27 1 0.6735 -10.8849 7.6404 28 1 1.7173 -9.0891 8.8922 29 6 4.8704 -6.8829 2.1598 30 7 2.1484 -1.1512 -0.0058 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 3.9906 2.1374 -0.0001 35 1 5.2609 -0.0001 -0.0013 36 1 5.2683 -2.3377 0.0900 37 1 3.9904 -3.0393 -0.9312 38 1 2.6433 -3.5303 1.0918 39 1 3.9212 -2.8288 2.1130 40 1 2.8439 -4.2905 3.1013 41 1 2.3432 -5.9957 3.0690 42 1 4.3982 -4.6442 4.8059 43 1 3.0096 -5.6215 5.2878 44 1 6.6516 -8.7271 4.4384 45 1 6.1549 -9.0304 2.7390 46 1 4.6028 -9.9675 4.7498 47 1 3.8265 -9.2022 3.3311 48 1 2.3958 -11.2257 5.7206 49 1 4.1429 -7.6881 2.0561 50 1 5.5841 -6.9273 1.3371 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036778700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:33 Heat of formation + Delta-G solvation = 18.680028 kcal Electronic energy + Delta-G solvation = -30289.921641 eV Core-core repulsion = 26316.915028 eV Total energy + Delta-G solvation = -3973.006613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.08299 -41.47646 -39.78153 -36.66826 -36.11789 -34.63402 -34.33677 -33.33645 -32.60287 -31.08474 -29.55582 -29.26341 -27.47065 -26.54225 -25.29733 -24.02920 -23.98525 -22.71347 -21.91561 -20.80717 -19.56853 -18.59067 -18.51993 -18.06670 -17.19792 -17.02714 -16.86197 -16.58615 -16.24614 -16.09154 -15.96529 -15.64314 -15.22925 -15.00951 -14.56661 -14.29616 -14.18143 -13.97802 -13.88692 -13.66266 -13.50322 -13.30381 -13.22024 -13.06648 -13.04771 -12.83043 -12.64133 -12.47855 -12.28877 -12.18809 -11.97283 -11.78578 -11.65335 -11.58391 -11.51436 -11.38805 -11.25909 -10.80130 -10.66102 -10.31431 -10.19722 -9.59030 -8.79318 -7.74766 -5.14901 -0.06178 0.10800 1.48381 1.50343 1.56447 1.61032 2.00350 2.51954 2.75056 2.93888 3.16630 3.35905 3.40020 3.61478 3.70626 3.79454 3.84693 4.01134 4.03340 4.08610 4.15118 4.17700 4.25493 4.26582 4.42362 4.50551 4.53682 4.57493 4.61518 4.63791 4.72079 4.75353 4.80467 4.84661 4.91989 4.97281 4.98239 5.09346 5.10026 5.11508 5.15561 5.35077 5.41844 5.50840 5.51905 5.58053 5.67761 5.85564 6.08840 6.32959 6.47567 7.13541 7.14600 7.15045 7.84107 8.50366 9.29829 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002469 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.931615 B =11336.130313 C =12671.004841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.301 3.699 3 N -0.545 5.545 4 C 0.148 3.852 5 C -0.226 4.226 6 C 0.169 3.831 7 C -0.048 4.048 8 C -0.120 4.120 9 C 0.517 3.483 10 O -0.580 6.580 11 N -0.604 5.604 12 C 0.123 3.877 13 C -0.132 4.132 14 C 0.166 3.834 15 H -0.003 1.003 16 C -0.094 4.094 17 H 0.098 0.902 18 C -0.130 4.130 19 C 0.161 3.839 20 N -0.610 5.610 21 C -0.224 4.224 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.951 5.951 25 Si 0.973 3.027 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.279 1.279 29 C 0.126 3.874 30 N -0.537 5.537 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.201 0.799 35 H 0.176 0.824 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.061 0.939 47 H -0.010 1.010 48 H 0.244 0.756 49 H 0.053 0.947 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 22.378 -10.738 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.034 3.966 3 N -0.261 5.261 4 C -0.017 4.017 5 C -0.248 4.248 6 C 0.024 3.976 7 C -0.086 4.086 8 C -0.160 4.160 9 C 0.307 3.693 10 O -0.461 6.461 11 N -0.335 5.335 12 C 0.000 4.000 13 C -0.172 4.172 14 C 0.059 3.941 15 H 0.015 0.985 16 C -0.114 4.114 17 H 0.117 0.883 18 C -0.169 4.169 19 C 0.036 3.964 20 N -0.335 5.335 21 C -0.353 4.353 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.802 3.198 26 H -0.203 1.203 27 H -0.226 1.226 28 H -0.205 1.205 29 C 0.004 3.996 30 N -0.253 5.253 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.218 0.782 35 H 0.194 0.806 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.008 0.992 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.688 22.109 -11.077 24.786 hybrid contribution 0.061 -0.903 0.863 1.250 sum 1.748 21.206 -10.214 23.602 Atomic orbital electron populations 1.20643 0.84343 1.04741 1.04547 1.23741 0.99328 0.83318 0.90164 1.68323 1.11449 1.30542 1.15777 1.23853 0.89184 1.00142 0.88553 1.23090 1.04441 0.93257 1.03999 1.21865 0.89557 0.96493 0.89718 1.20278 0.99823 0.89544 0.98958 1.21524 1.01858 0.91619 1.01032 1.21044 0.82103 0.86169 0.79958 1.90650 1.36813 1.80103 1.38542 1.48019 1.41035 1.16519 1.27973 1.21295 0.90073 1.02533 0.86056 1.21142 1.00602 0.98179 0.97253 1.19663 0.92315 0.87326 0.94749 0.98499 1.22281 0.98014 0.97224 0.93832 0.88348 1.23142 0.97914 0.94686 1.01111 1.21661 0.90103 0.92886 0.91766 1.44716 1.45254 1.04274 1.39303 1.19292 1.12059 0.94667 1.09291 0.89777 1.25543 1.02632 0.95790 1.02092 1.70088 1.46279 0.99707 1.43985 0.85220 0.79250 0.76119 0.79172 1.20332 1.22586 1.20526 1.21472 0.96161 0.84422 0.97580 1.68086 1.10372 1.31125 1.15741 0.88838 0.89293 0.88839 0.78206 0.80622 0.87879 0.89798 0.87591 0.87163 0.86998 0.93153 0.90373 0.91421 0.91580 0.89851 0.92085 0.99243 0.94632 0.92856 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.32 71.24 0.74 -0.43 16 2 C 0.30 5.88 7.64 138.75 1.06 6.94 16 3 N -0.55 -10.17 10.33 -187.84 -1.94 -12.11 16 4 C 0.15 1.97 11.31 84.71 0.96 2.93 16 5 C -0.23 -2.96 9.80 22.44 0.22 -2.74 16 6 C 0.17 3.02 6.20 42.56 0.26 3.29 16 7 C -0.05 -0.86 4.94 29.85 0.15 -0.71 16 8 C -0.12 -2.34 3.93 29.85 0.12 -2.22 16 9 C 0.52 14.01 7.71 87.66 0.68 14.68 16 10 O -0.58 -19.05 15.41 -3.02 -0.05 -19.10 16 11 N -0.60 -17.64 2.94 -823.28 -2.42 -20.06 16 12 C 0.12 3.41 6.39 85.98 0.55 3.96 16 13 C -0.13 -4.18 5.62 29.08 0.16 -4.01 16 14 C 0.17 6.39 2.63 43.81 0.12 6.50 16 15 H 0.00 -0.11 8.06 -2.39 -0.02 -0.13 16 16 C -0.09 -3.14 3.68 -9.77 -0.04 -3.17 16 17 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 18 C -0.13 -4.74 6.46 32.40 0.21 -4.53 16 19 C 0.16 7.74 5.35 86.86 0.46 8.20 16 20 N -0.61 -29.68 3.32 -678.14 -2.25 -31.93 16 21 C -0.22 -11.90 9.59 84.03 0.81 -11.10 16 22 H 0.08 4.23 7.02 -2.91 -0.02 4.21 16 23 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 24 N -0.95 -55.99 10.18 21.65 0.22 -55.77 16 25 Si 0.97 44.78 29.55 68.60 2.03 46.80 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 29 C 0.13 4.16 5.55 86.39 0.48 4.64 16 30 N -0.54 -11.23 9.94 -176.03 -1.75 -12.98 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.18 1.20 8.01 -2.91 -0.02 1.18 16 36 H 0.10 1.62 7.90 -2.39 -0.02 1.60 16 37 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 38 H 0.11 2.08 7.79 -2.39 -0.02 2.06 16 39 H 0.11 1.76 7.71 -2.39 -0.02 1.74 16 40 H 0.11 2.28 5.95 -2.39 -0.01 2.27 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.37 6.64 -2.38 -0.02 2.35 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.08 2.67 7.98 -2.38 -0.02 2.65 16 46 H 0.06 3.40 6.09 -2.39 -0.01 3.38 16 47 H -0.01 -0.54 7.11 -2.39 -0.02 -0.56 16 48 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.05 2.01 6.49 -2.39 -0.02 1.99 16 50 H 0.09 2.84 7.00 -2.39 -0.02 2.83 16 Total: -1.00 -71.08 390.81 2.17 -68.91 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.94 Total: 17.32 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.39 Total: 18.93 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -8.14 Total: -132.86 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.08 2.17 -68.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.585 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds