Wall clock time and date at job start Wed Apr 1 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31815 * 119.12235 * 2 1 4 4 C 1.32320 * 120.81292 * 180.02562 * 3 2 1 5 5 C 1.38612 * 119.10883 * 0.02562 * 4 3 2 6 6 C 1.38573 * 118.40018 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.45209 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47619 * 124.99766 * 7 6 5 9 9 C 1.50701 * 109.47292 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00071 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99681 * 180.02562 * 9 8 7 12 12 C 1.46600 * 119.68717 * 359.97438 * 11 9 8 13 13 C 1.53959 * 110.57605 * 227.82257 * 12 11 9 14 14 C 1.51514 * 107.34644 * 308.94705 * 13 12 11 15 15 H 1.09000 * 109.28047 * 306.97739 * 14 13 12 16 16 C 1.55363 * 107.79197 * 64.86105 * 14 13 12 17 17 H 1.08999 * 111.50884 * 50.39778 * 16 14 13 18 18 C 1.53747 * 100.22090 * 169.08044 * 16 14 13 19 19 C 1.55287 * 101.84046 * 320.90799 * 18 16 14 20 20 N 1.45461 * 117.34645 * 181.91156 * 14 13 12 21 21 C 1.36934 * 126.40890 * 30.62649 * 20 14 13 22 22 H 1.08004 * 119.99829 * 359.97438 * 21 20 14 23 23 C 1.38810 * 120.00139 * 179.97438 * 21 20 14 24 24 N 1.31619 * 120.00263 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47116 * 60.00413 * 25 23 21 27 27 H 1.48505 * 109.46865 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47216 * 299.99933 * 25 23 21 29 29 C 1.47720 * 119.68162 * 180.02562 * 11 9 8 30 30 N 1.31781 * 119.12373 * 180.29779 * 2 1 3 31 31 H 1.09001 * 109.46999 * 89.99697 * 1 2 3 32 32 H 1.08999 * 109.46882 * 210.00015 * 1 2 3 33 33 H 1.08998 * 109.46921 * 329.99977 * 1 2 3 34 34 H 1.08011 * 120.44253 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.80173 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.46917 * 4.99303 * 7 6 5 37 37 H 1.09002 * 109.47466 * 244.99531 * 7 6 5 38 38 H 1.08997 * 109.47208 * 59.99503 * 8 7 6 39 39 H 1.09009 * 109.46848 * 300.00195 * 8 7 6 40 40 H 1.08995 * 109.25533 * 107.53997 * 12 11 9 41 41 H 1.08999 * 109.24984 * 348.10486 * 12 11 9 42 42 H 1.08998 * 109.87643 * 189.48334 * 13 12 11 43 43 H 1.08999 * 109.88083 * 68.41108 * 13 12 11 44 44 H 1.09002 * 110.95368 * 202.76899 * 18 16 14 45 45 H 1.09000 * 110.95241 * 79.04207 * 18 16 14 46 46 H 1.08998 * 109.92217 * 263.13697 * 19 18 16 47 47 H 1.08999 * 109.92048 * 141.83114 * 19 18 16 48 48 H 0.96994 * 119.99884 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.07083 * 247.15835 * 29 11 9 50 50 H 1.09003 * 110.06606 * 8.62140 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 6 3.7166 -3.3570 1.1795 9 6 4.4419 -4.6779 1.1792 10 8 5.2613 -4.9197 0.3184 11 7 4.1791 -5.5911 2.1351 12 6 3.1869 -5.2919 3.1720 13 6 3.7442 -5.6282 4.5672 14 6 4.2805 -7.0441 4.5102 15 1 3.5054 -7.7074 4.1264 16 6 5.4795 -7.0581 3.5222 17 1 6.1950 -6.2682 3.7509 18 6 6.0533 -8.4553 3.8093 19 6 5.8909 -8.5559 5.3504 20 7 4.8253 -7.6022 5.7380 21 6 4.4278 -7.3023 7.0136 22 1 3.6357 -6.5868 7.1782 23 6 5.0427 -7.9180 8.0951 24 7 6.0083 -8.7896 7.8946 25 14 4.5008 -7.5083 9.8352 26 1 3.0641 -7.8469 9.9989 27 1 5.3083 -8.2936 10.8030 28 1 4.6995 -6.0584 10.0872 29 6 4.8946 -6.8835 2.1285 30 7 2.1484 -1.1512 -0.0060 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 3.9907 2.1375 -0.0001 35 1 5.2609 -0.0001 -0.0024 36 1 5.2685 -2.3377 0.0869 37 1 3.9896 -3.0389 -0.9335 38 1 2.6442 -3.5307 1.0905 39 1 3.9230 -2.8296 2.1110 40 1 2.2890 -5.8828 2.9915 41 1 2.9335 -4.2325 3.1318 42 1 2.9488 -5.5627 5.3096 43 1 4.5478 -4.9373 4.8218 44 1 7.1036 -8.5116 3.5234 45 1 5.4715 -9.2267 3.3049 46 1 6.8264 -8.2867 5.8408 47 1 5.6012 -9.5694 5.6279 48 1 6.4377 -9.2201 8.6503 49 1 4.1998 -7.6945 1.9106 50 1 5.6924 -6.8655 1.3860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036778701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:38 Heat of formation + Delta-G solvation = 35.414273 kcal Electronic energy + Delta-G solvation = -29982.762027 eV Core-core repulsion = 26010.481066 eV Total energy + Delta-G solvation = -3972.280961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.43113 -40.27082 -38.36748 -35.51176 -35.29534 -33.73727 -32.81463 -31.80664 -31.55249 -29.66006 -28.86368 -28.19600 -26.14065 -24.84701 -23.73123 -23.06079 -22.41087 -21.91164 -20.10215 -19.75605 -18.80440 -17.91032 -17.38693 -16.51967 -16.11314 -15.90990 -15.75818 -15.47726 -15.37756 -15.01175 -14.43223 -14.18480 -13.95611 -13.80394 -13.63356 -13.19392 -13.14286 -12.93080 -12.81837 -12.67997 -12.52394 -12.44762 -12.15513 -11.68547 -11.53682 -11.47681 -11.41812 -11.16623 -10.87472 -10.81200 -10.80349 -10.71204 -10.19871 -10.11612 -9.92128 -9.75811 -9.64859 -9.63292 -9.52562 -9.46565 -8.64244 -8.51689 -6.85919 -5.73527 -3.06874 0.56579 0.73042 2.66838 3.02741 3.38038 3.39510 3.42446 3.43883 3.55669 3.75112 4.08192 4.46131 4.48721 4.69552 4.72792 4.81096 4.87826 4.99415 5.04642 5.06818 5.14227 5.20109 5.22745 5.31759 5.37180 5.49143 5.53605 5.56528 5.57710 5.61053 5.71500 5.78496 5.79481 5.88161 6.02113 6.10494 6.13468 6.17079 6.21808 6.33969 6.47996 6.59776 6.62221 6.70362 6.82065 7.04527 7.47701 7.53135 7.59780 7.78596 7.78860 8.21064 8.22478 9.17231 9.80889 10.49091 11.38928 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.002301 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.625578 B =12164.431711 C =13341.983726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.232 4.232 6 C 0.185 3.815 7 C -0.056 4.056 8 C -0.131 4.131 9 C 0.514 3.486 10 O -0.551 6.551 11 N -0.606 5.606 12 C 0.110 3.890 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.019 0.981 16 C -0.124 4.124 17 H 0.078 0.922 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 C 0.126 3.874 30 N -0.516 5.516 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.253 0.747 49 H 0.068 0.932 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 15.571 -16.832 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.039 3.961 7 C -0.094 4.094 8 C -0.172 4.172 9 C 0.302 3.698 10 O -0.430 6.430 11 N -0.338 5.338 12 C -0.013 4.013 13 C -0.169 4.169 14 C 0.059 3.941 15 H 0.037 0.963 16 C -0.145 4.145 17 H 0.097 0.903 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.319 5.319 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.004 3.996 30 N -0.231 5.231 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.186 0.814 35 H 0.167 0.833 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.002 15.347 -17.024 23.966 hybrid contribution 0.741 0.251 1.158 1.397 sum -6.261 15.599 -15.866 23.114 Atomic orbital electron populations 1.20578 0.85664 1.04300 1.03885 1.23297 0.98229 0.83333 0.89954 1.68271 1.10218 1.30547 1.15172 1.23241 0.89681 0.98675 0.89702 1.22805 1.03128 0.94129 1.05346 1.21774 0.89584 0.95927 0.88835 1.20370 0.99334 0.89673 1.00011 1.21588 1.02305 0.93568 0.99723 1.20553 0.82549 0.85586 0.81147 1.90670 1.35217 1.79427 1.37643 1.48322 1.41261 1.16874 1.27392 1.21822 0.90661 1.00944 0.87892 1.21886 1.01470 0.99039 0.94477 1.20630 0.93276 0.92120 0.88094 0.96328 1.22628 0.99084 0.98640 0.94127 0.90317 1.22703 0.99675 0.94934 1.00119 1.21535 0.92704 0.93458 0.87034 1.44196 1.40407 1.47150 1.00147 1.18938 1.15116 1.20356 0.81081 0.90459 1.24793 0.98587 0.99158 0.97871 1.69926 1.26682 1.30845 1.29419 0.86236 0.77780 0.77611 0.84344 1.21186 1.21622 1.21218 1.21603 0.96244 0.83525 0.98233 1.68094 1.09562 1.30537 1.14950 0.89646 0.89446 0.89622 0.81437 0.83347 0.88872 0.88449 0.87772 0.88947 0.91527 0.90243 0.90500 0.91429 0.92060 0.92309 0.92730 0.94356 0.93687 0.91411 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.32 36.00 0.37 -0.21 16 2 C 0.32 3.17 7.64 -157.19 -1.20 1.97 16 3 N -0.53 -5.26 10.34 -10.72 -0.11 -5.37 16 4 C 0.15 1.21 11.30 -17.20 -0.19 1.01 16 5 C -0.23 -1.83 9.80 -39.32 -0.39 -2.21 16 6 C 0.19 1.77 6.20 -82.25 -0.51 1.26 16 7 C -0.06 -0.53 4.94 -27.89 -0.14 -0.67 16 8 C -0.13 -1.34 3.90 -27.88 -0.11 -1.45 16 9 C 0.51 6.95 7.67 -10.99 -0.08 6.87 16 10 O -0.55 -9.04 15.34 5.56 0.09 -8.95 16 11 N -0.61 -8.40 3.00 -172.53 -0.52 -8.91 16 12 C 0.11 1.38 6.21 -3.49 -0.02 1.36 16 13 C -0.13 -2.11 5.48 -26.98 -0.15 -2.26 16 14 C 0.17 3.25 2.58 -67.99 -0.18 3.08 16 15 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 16 C -0.12 -2.18 2.86 -89.41 -0.26 -2.43 16 17 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 18 C -0.14 -2.48 6.54 -25.13 -0.16 -2.65 16 19 C 0.18 4.21 5.45 -1.91 -0.01 4.20 16 20 N -0.59 -14.60 3.35 -163.10 -0.55 -15.15 16 21 C -0.23 -6.08 9.88 -15.06 -0.15 -6.23 16 22 H 0.08 1.98 7.21 -52.48 -0.38 1.60 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.73 10.44 55.49 0.58 -26.15 16 25 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.13 1.89 5.95 -3.80 -0.02 1.87 16 30 N -0.52 -5.46 9.94 -6.99 -0.07 -5.53 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.17 0.77 8.06 -52.48 -0.42 0.34 16 35 H 0.15 0.80 8.01 -52.48 -0.42 0.38 16 36 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 37 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.10 1.01 7.83 -51.93 -0.41 0.60 16 39 H 0.09 0.87 7.55 -51.92 -0.39 0.48 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.81 5.83 -51.93 -0.30 0.51 16 42 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 43 H 0.07 1.17 8.11 -51.93 -0.42 0.74 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.00 8.11 -51.93 -0.42 0.57 16 46 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 47 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 50 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -33.02 394.91 -10.98 -43.99 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.03 Total: 0.19 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.29 Total: 3.22 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.67 Total: -61.11 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.02 -10.98 -43.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036778701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.408 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds